-
1
-
-
73249132581
-
The cytochrome P450 homepage
-
Nelson DR (2009) The cytochrome P450 homepage. Hum Genomics 4: 59-65.
-
(2009)
Hum Genomics
, vol.4
, pp. 59-65
-
-
Nelson, D.R.1
-
2
-
-
56349172169
-
Environmental sensing and response genes in cnidaria: The chemical defensome in the sea anemone Nematostella vectensis
-
Goldstone JV (2008) Environmental sensing and response genes in cnidaria: the chemical defensome in the sea anemone Nematostella vectensis. Cell Biol Toxicol 24: 483-502.
-
(2008)
Cell Biol Toxicol
, vol.24
, pp. 483-502
-
-
Goldstone, J.V.1
-
3
-
-
2942724148
-
Biochemical markers of aquatic environment contamination - cytochrome P450 in fish
-
Siroka Z, Drastichova J (2004) Biochemical markers of aquatic environment contamination - cytochrome P450 in fish. Acta Veterinaria Brno 73: 123-132.
-
(2004)
Acta Veterinaria Brno
, vol.73
, pp. 123-132
-
-
Siroka, Z.1
Drastichova, J.2
-
4
-
-
0034647710
-
Sterol 14-demethylase P450 (CYP51) provides a breakthrough for the discussion on the evolution of cytochrome P450 gene superfamily
-
Yoshida Y, Aoyama Y, Noshiro M, Gotoh O (2000) Sterol 14-demethylase P450 (CYP51) provides a breakthrough for the discussion on the evolution of cytochrome P450 gene superfamily. Biochem Bioph Res Commun 273.
-
(2000)
Biochem Bioph Res Commun
, pp. 273
-
-
Yoshida, Y.1
Aoyama, Y.2
Noshiro, M.3
Gotoh, O.4
-
5
-
-
33745177792
-
Cytochrome P450 nomenclature
-
Nelson DR (2004) Cytochrome P450 nomenclature. Methods Mol Biol 320: 1-10.
-
(2004)
Methods Mol Biol
, vol.320
, pp. 1-10
-
-
Nelson, D.R.1
-
6
-
-
0031795556
-
Metazoan cytochrome P450 evolution
-
Nelson DR (1998) Metazoan cytochrome P450 evolution. Comp Biochem Phys C 121: 15-22.
-
(1998)
Comp Biochem Phys C
, vol.121
, pp. 15-22
-
-
Nelson, D.R.1
-
7
-
-
38949094492
-
Cytochrome P450 and Chemical Toxicology
-
Guengerich FP (2008) Cytochrome P450 and Chemical Toxicology. Chem Res Toxicol 21: 70-83.
-
(2008)
Chem Res Toxicol
, vol.21
, pp. 70-83
-
-
Guengerich, F.P.1
-
8
-
-
0042386052
-
Phylogenetic analysis of the cytochrome P450 3 (CYP3) gene family
-
McArthur AG, Hegelund T, Cox RL, Stegeman JJ, Liljenberg M, et al. (2003) Phylogenetic analysis of the cytochrome P450 3 (CYP3) gene family. J Mol Biol 57: 200-211.
-
(2003)
J Mol Biol
, vol.57
, pp. 200-211
-
-
McArthur, A.G.1
Hegelund, T.2
Cox, R.L.3
Stegeman, J.J.4
Liljenberg, M.5
-
9
-
-
0023598348
-
Evolution of cytochrome P450 proteins
-
Nelson DR, Gonzalez FJ (1987) Evolution of cytochrome P450 proteins. Mol Biol Evol 4: 572-593.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 572-593
-
-
Nelson, D.R.1
Gonzalez, F.J.2
-
10
-
-
0031809716
-
Thromboxanes: Synthase and receptors
-
Shen RF, Tai HH (1998) Thromboxanes: synthase and receptors. J Biomed Sci 5: 153-172.
-
(1998)
J Biomed Sci
, vol.5
, pp. 153-172
-
-
Shen, R.F.1
Tai, H.H.2
-
11
-
-
31344443943
-
Significance of the minor cytochrome P450 3A isoforms
-
Daly AK (2006) Significance of the minor cytochrome P450 3A isoforms. Clin Pharmacokinet 45: 13-31.
-
(2006)
Clin Pharmacokinet
, vol.45
, pp. 13-31
-
-
Daly, A.K.1
-
12
-
-
38549120238
-
CYP3 phylogenomics: Evidence for positive selection of CYP3A4 and CYP3A7
-
Qiu H, Taudien S, Herlyn H, Schmitz J, Zhou Y, et al. (2008) CYP3 phylogenomics: evidence for positive selection of CYP3A4 and CYP3A7. Pharmacogenet Genom 18: 53-66.
-
(2008)
Pharmacogenet Genom
, vol.18
, pp. 53-66
-
-
Qiu, H.1
Taudien, S.2
Herlyn, H.3
Schmitz, J.4
Zhou, Y.5
-
13
-
-
30544455508
-
CYP3C1, the first member of a new cytochrome P450 subfamily found in zebrafish (Danio rerio)
-
Corley-Smith GE, Su H-T, Wang-Buhler J-L, Tseng H-P, Hu C-H, et al. (2006) CYP3C1, the first member of a new cytochrome P450 subfamily found in zebrafish (Danio rerio). Biochem Biophy Res Comm 340: 1039-1046.
-
(2006)
Biochem Biophy Res Comm
, vol.340
, pp. 1039-1046
-
-
Corley-Smith, G.E.1
Su, H.-T.2
Wang-Buhler, J.-L.3
Tseng, H.-P.4
Hu, C.-H.5
-
14
-
-
33748784344
-
A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences
-
Gu X (2006) A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences. Mol Biol Evol 23: 1937-1945.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1937-1945
-
-
Gu, X.1
-
15
-
-
0035061686
-
Maximum-likelihood approach for gene family evolution under functional divergence
-
Gu X (2001) Maximum-likelihood approach for gene family evolution under functional divergence. Mol Biol Evol 18: 453-464.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 453-464
-
-
Gu, X.1
-
16
-
-
0032728408
-
Statistical methods for testing functional divergence after gene duplication
-
Gu X (1999) Statistical methods for testing functional divergence after gene duplication. Mol Biol Evol 16: 1664-1674.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1664-1674
-
-
Gu, X.1
-
17
-
-
0034572736
-
Cytochromes P450: A success story
-
reviews3003.3001-3003.3009
-
Werck-Reichhart D, Feyereisen R (2000) Cytochromes P450: a success story. Genome Biol 1: reviews3003.3001-3003.3009.
-
(2000)
Genome Biol
, vol.1
-
-
Werck-Reichhart, D.1
Feyereisen, R.2
-
18
-
-
33748802003
-
Structural basis for ligand promiscuity in cytochrome P450 3A4
-
Ekroos M, Sjogren T (2006) Structural basis for ligand promiscuity in cytochrome P450 3A4. PNAS 103: 13682-13687.
-
(2006)
PNAS
, vol.103
, pp. 13682-13687
-
-
Ekroos, M.1
Sjogren, T.2
-
19
-
-
3442896773
-
Crystal structures of human cytochrome P450 3A4 bound to metyrapone and progesterone
-
Williams PA, Cosme J, Vinkovic DM, Ward A, Angove HC, et al. (2004) Crystal structures of human cytochrome P450 3A4 bound to metyrapone and progesterone. Science 305: 683-686.
-
(2004)
Science
, vol.305
, pp. 683-686
-
-
Williams, P.A.1
Cosme, J.2
Vinkovic, D.M.3
Ward, A.4
Angove, H.C.5
-
20
-
-
33847379777
-
Helices F-G are important for the substrate specificities of CYP3A7
-
Torimoto N, Ishii I, Toyama K-I, Hata M, Tanaka K, et al. (2007) Helices F-G are important for the substrate specificities of CYP3A7. Drug Metab Dispos 35: 484-492.
-
(2007)
Drug Metab Dispos
, vol.35
, pp. 484-492
-
-
Torimoto, N.1
Ishii, I.2
Toyama, K.-I.3
Hata, M.4
Tanaka, K.5
-
21
-
-
0037314098
-
R8s: Inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
-
Sanderson MJ (2003) R8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 19: 301-302.
-
(2003)
Bioinformatics
, vol.19
, pp. 301-302
-
-
Sanderson, M.J.1
-
22
-
-
33845883023
-
Paleontological evidence to date the tree of life
-
Benton MJ, Donoghue PC (2007) Paleontological evidence to date the tree of life. Mol Biol Evol 24: 26-53.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 26-53
-
-
Benton, M.J.1
Donoghue, P.C.2
-
23
-
-
1242274629
-
Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates
-
Vandepoele K, Vos WD, Taylor JS, Meyer A, Peer YVd (2004) Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. PNAS 101: 1638-1643.
-
(2004)
PNAS
, vol.101
, pp. 1638-1643
-
-
Vandepoele, K.1
Vos, W.D.2
Taylor, J.S.3
Meyer, A.4
Yvd, P.5
-
24
-
-
2442707716
-
Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes
-
Christoffels A, Koh EG, Chia J-m, Brenner S, Aparicio S, et al. (2004) Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes. Mol Biol Evol 21: 1146-1151.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1146-1151
-
-
Christoffels, A.1
Koh, E.G.2
Chia, J.-M.3
Brenner, S.4
Aparicio, S.5
-
25
-
-
0032573579
-
Zebrafish hox clusters and vertebrate genome evolution
-
Amores A, Force A, Yan YL, Joly L, Amemiya C, et al. (1998) Zebrafish hox clusters and vertebrate genome evolution. Science 282: 1711-1714.
-
(1998)
Science
, vol.282
, pp. 1711-1714
-
-
Amores, A.1
Force, A.2
Yan, Y.L.3
Joly, L.4
Amemiya, C.5
-
26
-
-
33748183184
-
Gene loss and evolutionary rates following whole-genome duplication in teleost fishes
-
Brunet FG, Crollius HR, Paris M, Aury J-M, Giber P, et al. (2006) Gene loss and evolutionary rates following whole-genome duplication in teleost fishes. Mol Biol Evol 23: 1808-1816.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1808-1816
-
-
Brunet, F.G.1
Crollius, H.R.2
Paris, M.3
Aury, J.-M.4
Giber, P.5
-
27
-
-
34249736446
-
Rapid birth-death evolution specific to xenobiotic cytochrome P450 genes in vertebrates
-
Thomas JH (2007) Rapid birth-death evolution specific to xenobiotic cytochrome P450 genes in vertebrates. PLoS genet 3: e67.
-
(2007)
PLoS Genet
, vol.3
-
-
Thomas, J.H.1
-
28
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
29
-
-
0036079158
-
The human genome browser at UCSC
-
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, et al. (2002) The human genome browser at UCSC. Genome Res 12: 996-1006.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
-
30
-
-
2442706422
-
An overview of ensembl
-
Birney E, Andrews TD, Bevan P, Caccamo M, Chen Y, et al. (2004) An overview of ensembl. Genome Res 14: 925-928.
-
(2004)
Genome Res
, vol.14
, pp. 925-928
-
-
Birney, E.1
Andrews, T.D.2
Bevan, P.3
Caccamo, M.4
Chen, Y.5
-
31
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
32
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck J (2003) MrBayes 3: bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.2
-
33
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biol 52: 696-704.
-
(2003)
Systematic Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
34
-
-
45849154166
-
LG: An improved, general amino-acid replacement matrix
-
Le SQ, Gascuel O (2008) LG: an improved, general amino-acid replacement matrix. Mol Biol Evol 25: 1307-1320.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
-
35
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
36
-
-
33747847779
-
PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
-
Suyama M, Torrents D, Bork P (2006) PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res 34: W609-W612.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Suyama, M.1
Torrents, D.2
Bork, P.3
-
37
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z (1997) PAML: a program package for phylogenetic analysis by maximum likelihood CABIOS 13: 555-556.
-
(1997)
CABIOS
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
38
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
39
-
-
0034129663
-
RRTree: Relative-rate tests between groups of sequences on a phylogenetic tree
-
Robinson M, Huchon D (2000) RRTree: relative-rate tests between groups of sequences on a phylogenetic tree. Bioinformatics 16: 296-297.
-
(2000)
Bioinformatics
, vol.16
, pp. 296-297
-
-
Robinson, M.1
Huchon, D.2
-
40
-
-
0036205440
-
DIVERGE: Phylogeny-based analysis or functionalstructural divergence of a protein family
-
Gu X, Velden KV (2002) DIVERGE: phylogeny-based analysis or functionalstructural divergence of a protein family. Bioinformatics 18: 500-501.
-
(2002)
Bioinformatics
, vol.18
, pp. 500-501
-
-
Gu, X.1
Velden, K.V.2
-
41
-
-
4644301430
-
The structure of guman microsomal cytochrome P450 3A4 determined by X-ray crystallography to 2.05-A ° resolution
-
Yano JK, Wester MR, Schoch GA, Griffin KJ, Stout CD, et al. (2004) The structure of guman microsomal cytochrome P450 3A4 determined by X-ray crystallography to 2.05-A ° resolution. J Biol Chem 279: 38091-38094.
-
(2004)
J Biol Chem
, vol.279
, pp. 38091-38094
-
-
Yano, J.K.1
Wester, M.R.2
Schoch, G.A.3
Griffin, K.J.4
Stout, C.D.5
-
42
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
43
-
-
0034899781
-
Evaluation of methods for the prediction of membrane spanning regions
-
Moller S, Croning MDR, Apweiler R (2001) Evaluation of methods for the prediction of membrane spanning regions. Bioinformatics 17: 646-653.
-
(2001)
Bioinformatics
, vol.17
, pp. 646-653
-
-
Moller, S.1
Croning, M.D.R.2
Apweiler, R.3
|