In silico genotyping of the maize nested association mapping population

Molecular Breeding

Volumn 27, Issue 1, 2011, Pages 107-113

  Guo, Baohong ^a,b   Beavis, William D ^a  

^a IOWA STATE UNIVERSITY   (United States)

^b SYNGENTA CROP PROTECTION   (United States)

Author keywords

Genotypic imputation; Nested association mapping

Indexed keywords

PLANTS (BOTANY); POPULATION STATISTICS;

ASSOCIATION MAPPING; GENOTYPIC IMPUTATION; GENOTYPING; IN-SILICO; LINKAGE MAP; MAPPING POPULATIONS; NESTED ASSOCIATION MAPPING; POLYMORPHIC LOCI; POWER; SINGLE NUCLEOTIDES;

MAPPING;

ZEA MAYS;

EID: 78650733063     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-010-9503-4     Document Type: Article

References (20)

1. Abecasis GR, Cardon LR, Cookson WOC (2000) A general test of association for quantitative traits in nuclear families. Am J Hum Genet 66: 279-292.
2. Andersson L, Georges M (2004) Domestic-animal genomics: deciphering the genetics of complex traits. Nat Rev Genet 5: 202-212.
3. Blanc G, Charcosset A, Mangin B, Gallais A, Moreau L (2006) Connected populations for detecting quantitative trait loci and testing for epistasis: an application in maize. Theor Appl Genet 113: 206-224.
4. Buckler E, Gore M (2007) An Arabidopsis haplotype map takes root. Nat Genet 39: 1056-1057.
5. Burdick JT, Chen WM, Abecasis GR, Cheung VG (2006) In silico method for inferring genotypes in pedigrees. Nat Genet 38: 1002-1004.
6. Churchill GA, The Complex Trait Consortium (2004) The collaborative cross: a community resource for the genetic analysis of complex traits. Nat Genet 36d: 1133-1137.
7. Guo BH, Sleper DA, Beavis WD (2010) Nested association mapping for identification of functional markers. Genetics 186: 373-383.
8. Haley CS, Knott SA (1992) A simple regression method for mapping quantitative trait loci in line crosses using flanking markers. Heredity 69: 315-324.
9. Hirschhorn JN, Daly MJ (2005) Genome-wide association studies for common diseases and complex traits. Nat Rev Genet 6: 95-108.
10. Jannink JL, Wu XL (2003) Estimating allelic number and identity in state of QTLs in interconnected families. Genet Res 81: 133-144.
11. Jansen RC, Jannink JL, Beavis WD (2003) Mapping quantitative trait loci in plant breeding populations: use of parental haplotype sharing. Crop Sci 43: 829-834.
12. Jiang C, Zeng ZB (1997) Mapping quantitative trait loci with dominant and missing markers in various crosses from two inbred lines. Genetica 101: 47-58.
13. Kingsmore SF, Lindquist IE, Mudge J, Gesler DD, Beavis WD (2008) Genome-wide association studies: progress and potential for drug discovery and development. Nat Rev Drug Discov 7: 221-230.
14. Kong AD, Gudbjartsson F, Saint J, Jonsdottir GM, Gudjonsson SA, Richardsson B, Sigurdardottir S, Barnard J, Hallbeck B, Maaon G, Shlien A, Palsson ST, Frigge ML, Thorgeirsson TE, Gulcher JR, Stefansson K (2002) A high resolution recombination map of the human genome. Nat Genet 31: 241-247.
15. McMullen MD, Kresovich S, Villeda HS, Bradbury P, Li H, Sun Q, Flint-Garcia S, Thornsberry J, Acharya C, Bottoms D, Brown P, Browne C, Eller M, Guill K, Harjes C, Kroon D, Lepak N, Mitchell SE, Peterson B, Pressoir G, Romero S, Rosas MO, Salvo S, Yates H, Hanson M, Jones E, Smith S, Glaubitz JC, Goodman M, Ware D, Holland JB, Buckler ES (2009) Genetic properties of the maize nested association mapping population. Science 325: 737-740.
16. Nordborg M, Weigel D (2008) Next-generation genetics in plants. Nature 456: 720-723.
17. Sen S, Churchill G (2001) A statistical framework for quantitative trait mapping. Genetics 144: 805-816.
18. Wei F, Zhang J, Zhou S, He R, Schaeffer M, Collura K, Kudrna D, Faga BP, Wissotski M, Golser W, Rock SM, Graves TA, Fulton RS, Coe E, Schnable PS, Schwartz DC, Ware D, Clifton SW, Wilson RK, Wing RA (2009) The physical and genetic framework of the maize genome. PLoS Genet 5(11): e1000715.
19. Yi N, Shriner D (2007) Advances in Bayesian multiple quantitative trait loci mapping in experimental crosses. Heredity 2007: 1-13.
20. Yu J, Holland JB, McMullen MD, Buckler ES (2008) Genetic design and statistical power of nested association mapping in maize. Genetics 178: 539-551.