High-temperature deep-subsurface microbial communities as a possible equivalent of ancient ecosystems

Paleontological Journal

Volumn 44, Issue 7, 2010, Pages 851-859

  Bonch Osmolovskaya, E A ^a  

^a WINOGRADSKY INSTITUTE OF MICROBIOLOGY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 78650595055     PISSN: 00310301     EISSN: None     Source Type: Journal    
DOI: 10.1134/S0031030110070130     Document Type: Article

References (46)

1. J. P. Amend and E. L. Shock, "Energetics of Overall Metabolic Reactions of Thermophilic and Hyperthermophilic Archaea and Bacteria," FEMS Microbiol. Revs. 25, 175-243 (2001).
2. K. T. Andrews and B. K. C. Patel, "Fervidobacterium gondwanense sp. nov., a New Thermophilic Anaerobic Bacterium Isolated from Nonvolcanically Heated Geothermal Waters of the Great Artesian Basin of Australia," Int. J. Syst. Bacteriol. 46, 265-269 (1996).
3. J. Beeder, T. Torsvik, and T. Lien, "Thermodesulforhabdus norvegicus gen. nov., sp. nov., a Novel Thermophilic Sulfate-Reducing Bacterium from Oil Field Water," Arch. Microbiol. 164, 331-336 (1995).
4. E. A. Bonch-Osmolovskaya, "Studies of Thermophilic Microorganisms at the Institute of Microbiology, Russian Academy of Sciences," Mikrobiologiya 73(5) 644-658 (2004) [Microbiology 73 (5), 551-564 (2004)].
5. E. A. Bonch-Osmolovskaya and M. L. Miroshnichenko, "The Effect of Molecular Hydrogen and Elemental Sulfur on the Metabolism of Hyperthermophilic Archaea of the Genus Thermococcus," Mikrobiologiya 63, 777-782 (1994).
6. E. A. Bonch-Osmolovskaya, M. L. Miroshnichenko, A. I. Slobodkin, et al., "Biodiversity of Anaerobic Lithotrophic Prokaryotes in Subaerial Hydrothermal Springs of the Kamchatka Peninsula," Mikrobiologiya 68, 398-406 (1999).
7. E. A. Bonch-Osmolovskaya, M. L. Miroshnichenko, A. V. Lebedinsky, et al., "Radioisotopic, Culture-Based, and Oligonucleotide Microchip Analyses of Thermophilic Microbial Communities in a Continental High-Temperature Petroleum Reservoir," Appl. Environ. Microbiol. 69, 6143-6151 (2003).
8. E. A. Bonch-Osmolovskaya, M. L. Miroshnichenko, T. G. Sokolova, and A. I. Slobodkin, Thermophilic Microbial Communities: New Physiologic Groups, New Habitats: Proceedings of the Institute of Microbiology, Issue 12 (Nauka, Moscow, 2004), pp. 29-40 [in Russian].
9. S. Daumas, O. Goeneche, and A. Bianchi, "Activités metaboliques des bactéries des eaux géothermales du Dogger et du Trias du Bassin Parisien," C. R. Acad. Sci. Paris, Sér. 3, 301, 295-297 (1986).
10. J. W. Deming and J. A. Baross, "Deep-Sea Smokers: Windows to a Subsurface Biosphere?," Geochim. Cosmochim. Acta 57, 3219-3230 (1993).
11. H. W. Jannasch and M. J. Mottl, "Geomicrobiology of Deep-Sea Hydrothermal Vents," Science 229, 717-725 (1985).
12. D. M. Karl, The Microbiology of Deep-Sea Hydrothermal Vents (CRC Press, Boca Raton, 1995).
13. L.-H. Lin, P.-Z. Wamg, D. Rumble, et al., "Long-Term Sustainability of a High-Energy, Low-Diversity Crustal Biome", Science 314, 479 (2006).
14. S. L'Haridon, A.-L. Reysenbach, P. D. Glénat, et al., "Hot Subterranean Biosphere in a Continental Oil Reservoir," Nature 337, 223-224 (1995).
15. S. L'Haridon, M. L. Miroshnichenko, H. Hippe, et al., "Thermosipho geolei sp. nov., a Thermophilic Bacterium Isolated from a Continental Petroleum Reservoir in Western Siberia," Intern. J. System. Evol. Microbiol. 52, 1327-1334 (2002a).
16. S. L'Haridon, M. L. Miroshnichenko, H. Hippe, et al., "Petrotoga olearia sp. nov. and Petrotoga sibirica sp. nov., Two Thermophilic Bacteria Isolated from a Continental Petroleum Reservoir in Western Siberia," Int. J. Syst. Evol. Microbiol. 52, 1715-1722 (2002b).
17. M. L. Miroshnichenko, H. Hippe, E. Stackebrandt, et al., "Isolation of Hyperthermophilic Archaea in Western Siberia High Temperature Oil Reservoir and Characterization of Thermococcus sibiricus sp. nov.," Extremophiles 5, 85-91 (2001).
18. B. B. Namsaraev, E. A. Bonch-Osmolovskaya, M. L. Miroshnichenko, et al., "Microbiological Processes of the Carbon Cycle in Shallow-Water Hydrothermal Springs on the Southwestern Margins of the Pacific Ocean," Mikrobiologiya 63, 100-111 (1994).
19. T. N. Nazina, Y.-F. Xue, X.-Y. Wang, et al., "Microorganisms of the High-Temperature Liaohe Oil Field of China and Their Potential for MEOR," Res. Environm. Biotechnol. 3, 149-160 (2000a).
20. T. N. Nazina, Y-F. Xue, X-Y. Wang, et al., "Diversity or Activity of Microorganisms in the Daqing Oil Field of China and Their Potential for Biotechnological Applications," Res. Environm. Biotechnol. 3, 161-172 (2000b).
21. T. N. Nazina, N. M. Shestakova, Grigor'yan A. A., et al., "Phylogenetic Diversity and Activity of Anaerobic Microorganisms of High-Temperature Horizons of the Dagang Oil Field (P. R. China)," Mikrobiologiya 75(1), 1-12 (2006) [Microbiology 75 (1), 55-65 (2006)].
22. R. K. Nielsen and T. Torsvik, "Methanococcus thermolithotrophicus Isolated from North Sea Oil Field Reservoir Water," Appl. Environm. Microbiol. 62, 728-731 (1996).
23. K. Nielsen and K. Takai, "Hydrogen-Driven Subsurface Lithoautotrophic Microbial Ecosystems (SliMEs): Do They Exist and Why Should We Care?," Trends in Microbiol. 13, 405-410 (2005).
24. V. J. Orphan, L. T. Taylor, D. Hafenbradl, and E. F. Delong, "Culture-Dependent and Culture-Independent Characterization of Microbial Assemblages Associated with High-Temperature Petroleum Reservoirs," Appl. Environm. Microbiol. 66, 700-711 (2000).
25. R. J. Parkes, B. A. Cragg, S. J. Bale, et al., "Deep Bacterial Biosphere in Pacific Ocean Sediments," Nature 371, 410-413 (1994).
26. R. J. Parkes, B. A. Cragg, and P. Wellsbury, "Recent Studies of Bacterial Populations and Processes in Subseafloor Sediments: A Review," Hydrogeology J. 8, 11-28 (2000).
27. N. A. Pimenov and E. A. Bonch-Osmolovskaya, "In Situ Activity Studies in Thermal Environments," in Methods in Microbiology, Ed. by F. A. Rainey and A. Oren (Elsevier Acad. Press, 2006), pp. 29-54.
28. G. Ravot, M. Magot, M.-L. Fardeau, et al., "Thermotoga elfii sp. nov., a Novel Thermophilic Bacterium from an African Oil-Producing Well," Int. J. Syst. Bacteriol. 45, 308-314 (1995).
29. G. N. Rees, G. S. Grassia, A. J. Sheehy, et al., "Desulfacinum infernum gen. nov., sp. nov., a Thermophilic Sulfate-Reducing Bacterium from a Petroleum Reservoir," Int. J. Syst. Bacteriol. 45, 85-89 (1995).
30. J. T. Rosnes, T. Torsvik, and T. Lien, "Spore-Forming Sulfate-Reducing Bacteria Isolated from North Sea Oil Field Waters," Appl. Environm. Microbiol. 57, 2302-2307 (1994).
31. E. G. Roussel, M.-A. Cambon-Bonavita, J. Querellou, et al., "Extending the Subsea-Floor Biosphere," Science 320, 5879-5882 (2008).
32. N. M. Shestakova, "Phylogenetic Diversity and Activity of Microorganisms in High-Temperature Petroleum Reservoirs," Candidate's Dissertation in Biology (Moscow, 2007).
33. T. V. Slepova, I. I. Rusanov, T. G. Sokolova, et al., "Radioisotopic Tracing of Carbon Monoxide Conversion by Anaerobic Thermophilic Prokaryotes," Mikrobiologiya 76(5), 594-601 (2007) [Microbiology 76 (5), 523-529 (2007)].
34. A. I. Slobodkin, D. G. Zavarzina, T. G. Sokolova, and E. A. Bonch-Osmolovskaya, "Dissimilatory Reduction of Inorganic Electron Acceptors by Thermophilic Anaerobic Prokaryotes," Mikrobiologiya 68, 600-622 (1999) [Microbiology 68, 522-542 (1999)].
35. T. Sokolova, A.-M. Henstra, J. Sipma, et al., "Diversity and Ecophysiological Features of Thermophilic Carboxydotrophic Anaerobes," FEMS Microbiol. Ecol. 68, 131-141 (2009).
36. J. R. Spear, J. J. Walker, T. M. McCollom, and N. R. Pace, "Hydrogen and Bioenergetics in the Yellowstone Geothermal Ecosystem," Proc. Natl. Acad. Sci. USA 102, 2555-2560 (2005).
37. K. O. Stetter, R. Huber, E. Bloechl, et al., "Hyperthermophilic Archaea are Thriving in Deep North Sea and Alaskan Oil Reservoirs," Nature 365, 743-745 (1993).
38. T. O. Stevens and J. P. McKinley, "Lithoautotrophic Microbial Ecosystems in Deep Basalt Aquifers," Science 270, 450-455 (1995).
39. Y. Takahata, M. Nishijima, T. Hoaki, and T. Maruyama, "Distribution and Physiological Characteristics of Hyperthermophiles in the Kubiki Oil Reservoir in Niigata, Japan," Appl. Environm. Microbiol. 66, 73-79 (2000).
40. K. Takai and K. Horikoshi, "Genetic Diversity of Archaea in Deep-Sea Hydrothermal Vent Environments," Genetics 152, 1285-1297 (1999).
41. K. Takai, D. P. Moser, M. DeFlaun, et al., "Archaeal Diversity in Waters from Deep South African Gold Mine," Appl. Environm. Microbiol. 67, 5754-5760 (2001).
42. K. Takai, T. Gamo, U. Tsunogai, et al., "Geochemical and Microbiological Evidence for a Hydrogen-Based Subsurface Lithoautotrophic Microbial Ecosystem (HyperSLiME) beneath an Active Deep-Sea Hydrothermal Fluid," Extremophiles 8, 268-282 (2004).
43. A. Teske, "The Deep Subsurface Biosphere is Alive and Well," Trends in Microbiol. 13, 402-404 (2005).
44. P. Wellsbury, I. Mather, and R. J. Parkes, "Geomicrobiology of Deep, Low Organic Carbon Sediments in the Woodlark Basin, Pacific Ocean," FEMS Microbiol. Ecol. 42, 59-70 (2002).
45. W. B. Whitman, D. C. Coleman, and J. W. Wiebe, "Prokaryotes: The Unseen Majority," Proc. Natl. Acad. Sci. USA 95, 6578-6583 (1998).
46. G. A. Zavarzin, E. A. Bonch-Osmolovskaya, and V. A. Svetlichnyi, "Extreme Thermophiles in Hydrotherms," in Recent Advances in Microbial Ecology, Ed. by T. Hattori (Japan Sci. Soc. Press, 1989), pp. 33-37.