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Volumn 4, Issue 2, 2010, Pages 123-128

Genetic analysis of gene expression for pigmentation in Chinese cabbage (Brassica rapa)

Author keywords

Anthocyanin; Brassica rapa; Chinese cabbage; Pigmentation; Transcription factor

Indexed keywords

ANTHOCYANINS; BIOCHEMISTRY; BIOSYNTHESIS; GENES; TISSUE; TRANSCRIPTION FACTORS;

EID: 78650550432     PISSN: 19760280     EISSN: 20927843     Source Type: Journal    
DOI: 10.1007/s13206-010-4206-9     Document Type: Article
Times cited : (14)

References (37)
  • 1
    • 0028249528 scopus 로고
    • Biochemical, microbiological, and nutritional aspects of kimchi (Korean fermented vegetable products)
    • Cheigh, H.S. & Park, K.Y. Biochemical, microbiological, and nutritional aspects of kimchi (Korean fermented vegetable products). Crit. Rev. Food Sci. Nutr. 34, 175-203 (1994).
    • (1994) Crit. Rev. Food Sci. Nutr. , vol.34 , pp. 175-203
    • Cheigh, H.S.1    Park, K.Y.2
  • 3
    • 0001364575 scopus 로고    scopus 로고
    • Anthocyanin content and UVB sensitivity in Brassica rapa
    • Klaper, R., Frankel, S. & Berenbaum, M.R. Anthocyanin content and UVB sensitivity in Brassica rapa. Photochem. Photobio. 63, 811-813 (1996).
    • (1996) Photochem. Photobio. , vol.63 , pp. 811-813
    • Klaper, R.1    Frankel, S.2    Berenbaum, M.R.3
  • 4
    • 0031006518 scopus 로고    scopus 로고
    • Internal and external photoprotection in developing leaves of the CAM plant Cotyledon orbiculata
    • Barker, D.H., Seaton, G.G.R. & Robinson, S.A. Internal and external photoprotection in developing leaves of the CAM plant Cotyledon orbiculata. Plant Cell Enviro. 20, 617-620 (1996).
    • (1996) Plant Cell Enviro. , vol.20 , pp. 617-620
    • Barker, D.H.1    Seaton, G.G.R.2    Robinson, S.A.3
  • 5
    • 0031903974 scopus 로고    scopus 로고
    • Photoinhibition in different colored juvenile leaves of Syzgium species
    • Dodd, I.C., Critchley, C., Woodall, G.S. & Stewart, G.R. Photoinhibition in different colored juvenile leaves of Syzgium species. J. Exp. Bot. 49, 1437-1445 (1998).
    • (1998) J. Exp. Bot. , vol.49 , pp. 1437-1445
    • Dodd, I.C.1    Critchley, C.2    Woodall, G.S.3    Stewart, G.R.4
  • 6
    • 0027138596 scopus 로고
    • Regulatory genes controlling anthocyanin pigmentation are functionally conserved among plant species and have distinct sets of target genes
    • Quattrocchio, F. et al. Regulatory genes controlling anthocyanin pigmentation are functionally conserved among plant species and have distinct sets of target genes. Plant Cell 5, 1497-1512 (1993).
    • (1993) Plant Cell , vol.5 , pp. 1497-1512
    • Quattrocchio, F.1
  • 7
    • 33746234722 scopus 로고    scopus 로고
    • Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits
    • Dessimoz, C., Boeckmann, B., Roth, A.C. & Gonnet, G.H. Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits. Nucleic Acids Res. 34, 3309-3316 (2006).
    • (2006) Nucleic Acids Res. , vol.34 , pp. 3309-3316
    • Dessimoz, C.1    Boeckmann, B.2    Roth, A.C.3    Gonnet, G.H.4
  • 8
    • 0035861990 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
    • Remm, M., Storm, C. & Sonnhammer, E. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol. 314, 1041-1052 (2001).
    • (2001) J. Mol. Biol. , vol.314 , pp. 1041-1052
    • Remm, M.1    Storm, C.2    Sonnhammer, E.3
  • 9
    • 0036125446 scopus 로고    scopus 로고
    • Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA)
    • Lee, Y. et al. Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA). Genome Res. 12, 493-502 (2002).
    • (2002) Genome Res. , vol.12 , pp. 493-502
    • Lee, Y.1
  • 10
    • 72649105744 scopus 로고    scopus 로고
    • Arabidopsis NAC transcription factor, ANAC078, regulates flavonoid biosynthesis under high-light
    • Morishita, T. et al. Arabidopsis NAC transcription factor, ANAC078, regulates flavonoid biosynthesis under high-light. Plant Cell Physio. 50, 2210-2222 (2009).
    • (2009) Plant Cell Physio. , vol.50 , pp. 2210-2222
    • Morishita, T.1
  • 11
    • 33646231532 scopus 로고    scopus 로고
    • Isolation of cDNAs for R2R3-MYB, bHLH and WDR transcriptional regulators and identification of c and ca mutations conferring white flowers in the Japanese morning glory
    • Morita, Y., Saitoh, M., Hoshino, A., Nitasaka, E. & Iida, S. Isolation of cDNAs for R2R3-MYB, bHLH and WDR transcriptional regulators and identification of c and ca mutations conferring white flowers in the Japanese morning glory. Plant Cell Physio. 47, 457-470 (2006).
    • (2006) Plant Cell Physio. , vol.47 , pp. 457-470
    • Morita, Y.1    Saitoh, M.2    Hoshino, A.3    Nitasaka, E.4    Iida, S.5
  • 12
    • 33745475615 scopus 로고    scopus 로고
    • A small family of MYB-regulatory genes controls floral pigmentation intensity and patterning in the genus Antirrhinum
    • Schwinn, K. et al. A small family of MYB-regulatory genes controls floral pigmentation intensity and patterning in the genus Antirrhinum. Plant Cell 18, 831-851 (2006).
    • (2006) Plant Cell , vol.18 , pp. 831-851
    • Schwinn, K.1
  • 13
    • 0142181015 scopus 로고    scopus 로고
    • A network of redundant bHLH proteins functions in all TTG1-dependent pathways of Arabidopsis
    • Zhang, F., Gonzalez, A., Zhao, M., Payne, C.T. & Lloyd, A. A network of redundant bHLH proteins functions in all TTG1-dependent pathways of Arabidopsis. Development 130, 4859-4869 (2003).
    • (2003) Development , vol.130 , pp. 4859-4869
    • Zhang, F.1    Gonzalez, A.2    Zhao, M.3    Payne, C.T.4    Lloyd, A.5
  • 14
    • 3843067588 scopus 로고    scopus 로고
    • TT2, TT8, and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis thaliana
    • Baudry, A. et al. TT2, TT8, and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis thaliana. Plant J. 39, 366-380 (2004).
    • (2004) Plant J , vol.39 , pp. 366-380
    • Baudry, A.1
  • 15
    • 17844403787 scopus 로고    scopus 로고
    • Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes
    • Hartmann, U., Sagasser, M., Mehrtens, F., Stracke, R. & Weisshaar, B. Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes. Plant Mol. Biol. 57, 155-171 (2005).
    • (2005) Plant Mol. Biol. , vol.57 , pp. 155-171
    • Hartmann, U.1    Sagasser, M.2    Mehrtens, F.3    Stracke, R.4    Weisshaar, B.5
  • 16
    • 0023683667 scopus 로고
    • How eukaryotic transcriptional activators work
    • Ptashne, M. How eukaryotic transcriptional activators work. Nature 335, 683-689 (1988).
    • (1988) Nature , vol.335 , pp. 683-689
    • Ptashne, M.1
  • 17
    • 67649891830 scopus 로고    scopus 로고
    • Text-based over-representation analysis of microarray gene lists with annotation bias
    • Hui, S.L. & David, K. Text-based over-representation analysis of microarray gene lists with annotation bias. Nucleic Acids Res. 37, e79 (2009).
    • (2009) Nucleic Acids Res. , vol.37
    • Hui, S.L.1    David, K.2
  • 18
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • Da, W.H., Brad, T.S. & Richard, A.L. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37, 1-13 (2009).
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Da, W.H.1    Brad, T.S.2    Richard, A.L.3
  • 19
    • 0031797380 scopus 로고    scopus 로고
    • Linkage analysis of RFLP markers for clubroot resistance and pigmentation in Chinese cabbage (Brassica rapa ssp. Pekinensis)
    • Matsumoto, E., Yasui, C., Ohi, M. & Tsukada, M. Linkage analysis of RFLP markers for clubroot resistance and pigmentation in Chinese cabbage (Brassica rapa ssp. Pekinensis). Euphytica 104, 79-86 (1998).
    • (1998) Euphytica , vol.104 , pp. 79-86
    • Matsumoto, E.1    Yasui, C.2    Ohi, M.3    Tsukada, M.4
  • 20
    • 0033165677 scopus 로고    scopus 로고
    • ANTHOCYANINLESS2, a homeobox gene affecting anthocyanin distribution and root development in Arabidopsis
    • Kubo, H., Peeters, A.J.M., Aarts, M.G.M. & Pereira, A. ANTHOCYANINLESS2, a homeobox gene affecting anthocyanin distribution and root development in Arabidopsis. Plant Cell 11, 1217-1226 (1999).
    • (1999) Plant Cell , vol.11 , pp. 1217-1226
    • Kubo, H.1    Peeters, A.J.M.2    Aarts, M.G.M.3    Pereira, A.4
  • 21
    • 35748941997 scopus 로고    scopus 로고
    • Mapping the Anthocyaninless (anl) Locus in Rapid-Cycling Brassica rapa (RBr) to Linkage Group R9
    • Carrie, B. & Douglas, L.W. Mapping the Anthocyaninless (anl) Locus in Rapid-Cycling Brassica rapa (RBr) to Linkage Group R9. BMC Genet. 8, 64 (2007).
    • (2007) BMC Genet. , vol.8 , pp. 64
    • Carrie, B.1    Douglas, L.W.2
  • 22
    • 0037371646 scopus 로고    scopus 로고
    • Supplementation of diets with black rice pigment fraction attenuates atherosclerotic plaque formation in apolipoprotein E deficient mice
    • Xia, M., Ling, W.H., Ma, J., Kitts, D.D. & Zawistowski, J. Supplementation of diets with black rice pigment fraction attenuates atherosclerotic plaque formation in apolipoprotein E deficient mice. J. Nutr. 133, 744-751 (2003).
    • (2003) J. Nutr. , vol.133 , pp. 744-751
    • Xia, M.1    Ling, W.H.2    Ma, J.3    Kitts, D.D.4    Zawistowski, J.5
  • 23
    • 33746652574 scopus 로고    scopus 로고
    • An anthocyanin-rich extract from black rice enhances atherosclerotic plaque stabilization in apolipoprotein e-deficient mice
    • Xia, X. et al. An anthocyanin-rich extract from black rice enhances atherosclerotic plaque stabilization in apolipoprotein e-deficient mice. J. Nutr. 136, 2220-2225 (2006).
    • (2006) J. Nutr. , vol.136 , pp. 2220-2225
    • Xia, X.1
  • 24
    • 16444380862 scopus 로고    scopus 로고
    • Systematic identification and characterization of anthocyanins by HPLC-ESI-MS/ MS in common foods in the United States: Fruits and berries
    • Wu, X. & Prior, R.L. Systematic identification and characterization of anthocyanins by HPLC-ESI-MS/MS in common foods in the United States: fruits and berries. J. Agric. Food Chem. 53, 2589-2599 (2005).
    • (2005) J. Agric. Food Chem. , vol.53 , pp. 2589-2599
    • Wu, X.1    Prior, R.L.2
  • 25
    • 1242336785 scopus 로고    scopus 로고
    • Comparison of HPLC methods for determination of anthocyanins and anthocyanidins in bilberry extracts
    • Zhang, Z., Kou, X., Fugal, K. & McLaughlin, J. Comparison of HPLC methods for determination of anthocyanins and anthocyanidins in bilberry extracts. J. Agric. Food Chem. 52, 688-691 (2004).
    • (2004) J. Agric. Food Chem. , vol.52 , pp. 688-691
    • Zhang, Z.1    Kou, X.2    Fugal, K.3    McLaughlin, J.4
  • 26
    • 47049097043 scopus 로고    scopus 로고
    • An efficient method to identify differentially expressed genes in microarray experiments
    • Qin, H., Feng, T., Harding, S.A., Tsai, C.J. & Zhang, S. An efficient method to identify differentially expressed genes in microarray experiments. Bioinformatics 24, 1583-1589 (2008).
    • (2008) Bioinformatics , vol.24 , pp. 1583-1589
    • Qin, H.1    Feng, T.2    Harding, S.A.3    Tsai, C.J.4    Zhang, S.5
  • 27
    • 76149123939 scopus 로고    scopus 로고
    • Gene expression pattern analysis of PAHs and VOCs in rat blood using HazChem rat array
    • Park, H.W. et al. Gene expression pattern analysis of PAHs and VOCs in rat blood using HazChem rat array. BioChip J. 3, 333-338 (2009).
    • (2009) BioChip J , vol.3 , pp. 333-338
    • Park, H.W.1
  • 28
    • 70449105693 scopus 로고    scopus 로고
    • Genetic analysis of seed-specific gene expression for pigmentation in colored rice
    • Kim, C.K. et al. Genetic analysis of seed-specific gene expression for pigmentation in colored rice. BioChip J. 3, 125-129 (2009).
    • (2009) BioChip J , vol.3 , pp. 125-129
    • Kim, C.K.1
  • 29
    • 13944272631 scopus 로고    scopus 로고
    • Identification of Chinese cabbage genes up-regulated by prolonged cold by using microarray analysis
    • Yang, K.A. et al. Identification of Chinese cabbage genes up-regulated by prolonged cold by using microarray analysis. Plant Sci. 168, 959-966 (2005).
    • (2005) Plant Sci. , vol.168 , pp. 959-966
    • Yang, K.A.1
  • 30
    • 33747880786 scopus 로고    scopus 로고
    • Molecular cloning and stress-dependent regulation of potassium channel gene in Chinese cabbage (Brassica rapa ssp. Pekinensis)
    • Yidong, Z. et al. Molecular cloning and stress-dependent regulation of potassium channel gene in Chinese cabbage (Brassica rapa ssp. Pekinensis). Plant Physiol. 163, 968-978 (2006).
    • (2006) Plant Physiol. , vol.163 , pp. 968-978
    • Yidong, Z.1
  • 31
    • 63449139874 scopus 로고    scopus 로고
    • Transcriptome analysis in Brassica rapa under the abiotic stresses using Brassica 24K oligo microarray
    • Lee, S.C. et al. Transcriptome analysis in Brassica rapa under the abiotic stresses using Brassica 24K oligo microarray. Mol. Cell 26, 595-605 (2008).
    • (2008) Mol. Cell , vol.26 , pp. 595-605
    • Lee, S.C.1
  • 32
    • 0034489893 scopus 로고    scopus 로고
    • Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis
    • Borevitz, J.O., Xia, Y., Blount, J., Dixon, R.A. & Lamb, C. Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis. Plant Cell 12, 2383-2393 (2000).
    • (2000) Plant Cell , vol.12 , pp. 2383-2393
    • Borevitz, J.O.1    Xia, Y.2    Blount, J.3    Dixon, R.A.4    Lamb, C.5
  • 33
    • 33644999271 scopus 로고    scopus 로고
    • Sucrosespecific induction of anthocyanin biosynthesis in Arabidopsis requires the MYB75/PAP1 gene1
    • Sheng, T., Joost, K., Maarten, K. & Sjef, S. Sucrosespecific induction of anthocyanin biosynthesis in Arabidopsis requires the MYB75/PAP1 gene1. Plant Physiol. 139, 1840-1852 (2005).
    • (2005) Plant Physiol. , vol.139 , pp. 1840-1852
    • Sheng, T.1    Joost, K.2    Maarten, K.3    Sjef, S.4
  • 34
    • 72649105744 scopus 로고    scopus 로고
    • Arabidopsis NAC transcription factor, ANAC078, regulates flavonoid biosynthesis under high-light
    • Teruyuki, M. et al. Arabidopsis NAC transcription factor, ANAC078, regulates flavonoid biosynthesis under high-light. Plant Cell Physiol. 50, 2210-2222 (2009).
    • (2009) Plant Cell Physiol. , vol.50 , pp. 2210-2222
    • Teruyuki, M.1
  • 35
    • 3142656622 scopus 로고    scopus 로고
    • JASMONATE-INSENSITIVE1 encodes a MYC transcription factor essential to discriminate between different jasmonate-regulated defense responses in Arabidopsis
    • Oscar, L., Jose, M.C., Jose, J. & Roberto, S. JASMONATE-INSENSITIVE1 encodes a MYC transcription factor essential to discriminate between different jasmonate-regulated defense responses in Arabidopsis. Plant Cell 16, 1938-1950 (2004).
    • (2004) Plant Cell , vol.16 , pp. 1938-1950
    • Oscar, L.1    Jose, M.C.2    Jose, J.3    Roberto, S.4
  • 36
    • 0035983845 scopus 로고    scopus 로고
    • TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor
    • Johnson, C.S., Kolevski, B. & Smyth, D.R. TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor. Plant Cell 14, 1359-1375 (2002).
    • (2002) Plant Cell , vol.14 , pp. 1359-1375
    • Johnson, C.S.1    Kolevski, B.2    Smyth, D.R.3
  • 37
    • 41849089754 scopus 로고    scopus 로고
    • Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings
    • Antonio, G., Mingzhe, Z., John, M.L. & Alan, M.L. Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings. Plant J. 53, 814-827 (2008).
    • (2008) Plant J , vol.53 , pp. 814-827
    • Antonio, G.1    Mingzhe, Z.2    John, M.L.3    Alan, M.L.4


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