메뉴 건너뛰기




Volumn 51, Issue 1, 2011, Pages 52-59

Assessment of power and false discovery rate in genome-wide association studies using the barleyCAP germplasm

Author keywords

[No Author keywords available]

Indexed keywords

HORDEUM; HORDEUM VULGARE SUBSP. VULGARE;

EID: 78650458032     PISSN: 0011183X     EISSN: None     Source Type: Journal    
DOI: 10.2135/cropsci2010.02.0064     Document Type: Article
Times cited : (40)

References (21)
  • 1
    • 33646443682 scopus 로고    scopus 로고
    • Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes
    • Aranzana, M.J., S. Kim, K. Zhao, E. Bakker, M. Horton, K. Jakob, et al. 2005. Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. PLoS Genet. 1:e60.
    • (2005) PLoS Genet. , vol.1
    • Aranzana, M.J.1    Kim, S.2    Zhao, K.3    Bakker, E.4    Horton, M.5    Jakob, K.6
  • 2
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and Y. Hochberg. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Statist. Soc. B 57:289-300.
    • (1995) J. R. Statist. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 3
    • 33644781694 scopus 로고    scopus 로고
    • Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars
    • Breseghello, F., and M.E. Sorrells. 2006. Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172:1165-1177.
    • (2006) Genetics , vol.172 , pp. 1165-1177
    • Breseghello, F.1    Sorrells, M.E.2
  • 5
    • 77749252491 scopus 로고    scopus 로고
    • Population structure and linkage disequilibrium in US barley germplasm: Implications for association mapping
    • Hamblin, M., T. Close, P. Bhat, S. Chao, K. Abraham, T. Blake, et al. 2010. Population structure and linkage disequilibrium in US barley germplasm: Implications for association mapping. Crop Sci. 50:556-566.
    • (2010) Crop Sci. , vol.50 , pp. 556-566
    • Hamblin, M.1    Close, T.2    Bhat, P.3    Chao, S.4    Abraham, K.5    Blake, T.6
  • 6
    • 61649121503 scopus 로고    scopus 로고
    • Bayesian multilocus association mapping on ordinal and censored traits and its application to the analysis of genetic variation among Oryza sativa L. germplasms
    • Iwata, H., K. Ebana, S. Fukuoka, J.-L. Jannink, and T. Hayashi. 2009. Bayesian multilocus association mapping on ordinal and censored traits and its application to the analysis of genetic variation among Oryza sativa L. germplasms. Theor. Appl. Genet. 118:865-880.
    • (2009) Theor. Appl. Genet. , vol.118 , pp. 865-880
    • Iwata, H.1    Ebana, K.2    Fukuoka, S.3    Jannink, J.-L.4    Hayashi, T.5
  • 7
    • 34248372860 scopus 로고    scopus 로고
    • Bayesian association mapping of multiple quantitative trait loci and its application to the analysis of genetic variation among Oryza sativa L. germplasms
    • Iwata, H., Y. Uga, Y. Yoshioka, K. Ebana, and T. Hayashi. 2007. Bayesian association mapping of multiple quantitative trait loci and its application to the analysis of genetic variation among Oryza sativa L. germplasms. Theor. Appl. Genet. 114:1437-1449.
    • (2007) Theor. Appl. Genet. , vol.114 , pp. 1437-1449
    • Iwata, H.1    Uga, Y.2    Yoshioka, Y.3    Ebana, K.4    Hayashi, T.5
  • 8
    • 45149105926 scopus 로고    scopus 로고
    • Efficient control of population structure in model organism association mapping
    • Kang, H.M., N.A. Zaitlen, C.M. Wade, A. Kirby, D. Heckerman, M.J. Daly, and E. Eskin. 2008. Efficient control of population structure in model organism association mapping. Genetics 178:1709-1723.
    • (2008) Genetics , vol.178 , pp. 1709-1723
    • Kang, H.M.1    Zaitlen, N.A.2    Wade, C.M.3    Kirby, A.4    Heckerman, D.5    Daly, M.J.6    Eskin, E.7
  • 9
    • 0026888884 scopus 로고
    • Estimation of effects of single genes on quantitative trait
    • Kennedy, B.W., M. Quinton, and J.A.M. van Arendonk. 1992. Estimation of effects of single genes on quantitative trait. J. Anim. Sci. 70:2000-2012.
    • (1992) J. Anim. Sci. , vol.70 , pp. 2000-2012
    • Kennedy, B.W.1    Quinton, M.2    van Arendonk, J.A.M.3
  • 10
    • 33644519375 scopus 로고    scopus 로고
    • Linkage disequilibrium mapping of morphological, resistance, and other agronomically relevant traits in modern spring barley cultivars
    • Kraakman, A.T.W., F. Martínez, B. Mussiraliev, F.A. v. Eeuwijk, and R.E. Niks. 2006. Linkage disequilibrium mapping of morphological, resistance, and other agronomically relevant traits in modern spring barley cultivars. Mol. Breed. 17:41-58.
    • (2006) Mol. Breed. , vol.17 , pp. 41-58
    • Kraakman, A.T.W.1    Martínez, F.2    Mussiraliev, B.3    Eeuwijk, F.A.V.4    Niks, R.E.5
  • 11
    • 0032827782 scopus 로고    scopus 로고
    • The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits
    • Long A.D., and C.H. Langley. 1999. The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits. Genome Res. 9:720-731.
    • (1999) Genome Res. , vol.9 , pp. 720-731
    • Long, A.D.1    Langley, C.H.2
  • 12
    • 2442585696 scopus 로고    scopus 로고
    • The effects of human population structure on large genetic association studies
    • Marchini J., L.R. Cardon, M.S. Phillips, and P. Donnelly. 2004. The effects of human population structure on large genetic association studies. Nat. Genet. 36:512-517.
    • (2004) Nat. Genet. , vol.36 , pp. 512-517
    • Marchini, J.1    Cardon, M.S.2    Phillips, L.R.3    Donnelly, P.4
  • 13
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J.K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 14
    • 5344244656 scopus 로고    scopus 로고
    • R Development Core Team, Available at, (verified 21 Sept. 2010). R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team. 2008. R: A language and environment for statistical computing. Available at http://www.rproject.org/ (verified 21 Sept. 2010). R Foundation for Statistical Computing, Vienna, Austria.
    • (2008) R: A language and environment for statistical computing
  • 15
    • 33845474931 scopus 로고    scopus 로고
    • Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crops
    • Rostoks, N., L. Ramsey, K. Mackenzie, L. Cardle, P.R. Bhat, M.L. Roose, et al. 2009. Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crops. Proc. Natl. Acad. Sci. USA 103:18656-18661.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 18656-18661
    • Rostoks, N.1    Ramsey, L.2    Mackenzie, K.3    Cardle, L.4    Bhat, P.R.5    Roose, M.L.6
  • 18
    • 31744440502 scopus 로고    scopus 로고
    • A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
    • Yu, J., G. Pressoir, W.H. Briggs, I.V. Bi, M. Yamasaki, J.F. Doebley, et al. 2006. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat. Genet. 2:203-208.
    • (2006) Nat. Genet. , vol.2 , pp. 203-208
    • Yu, J.1    Pressoir, G.2    Briggs, W.H.3    Bi, I.V.4    Yamasaki, M.5    Doebley, J.F.6
  • 20
    • 33846466407 scopus 로고    scopus 로고
    • An Arabidopsis example of association mapping in structured samples
    • Zhao, K., M.J. Aranzana, S. Kim, C. Lister, C. Shindo, C. Tang, et al. 2007. An Arabidopsis example of association mapping in structured samples. PLoS Genet. 3:71-82.
    • (2007) PLoS Genet. , vol.3 , pp. 71-82
    • Zhao, K.1    Aranzana, M.J.2    Kim, S.3    Lister, C.4    Shindo, C.5    Tang, C.6
  • 21
    • 70349333179 scopus 로고    scopus 로고
    • Nonmetric multidimensional scaling corrects for population structure in association mapping with different sample types
    • Zhu, C., and J. Yu. 2009. Nonmetric multidimensional scaling corrects for population structure in association mapping with different sample types. Genetics 182:875-888.
    • (2009) Genetics , vol.182 , pp. 875-888
    • Zhu, C.1    Yu, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.