-
2
-
-
14244266086
-
Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes
-
Pandey, D.P. and Gerdes, K. (2005) Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes. Nucleic Acids Res., 33, 966-976.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 966-976
-
-
Pandey, D.P.1
Gerdes, K.2
-
3
-
-
33745845467
-
Characterization of mRNA interferases from Mycobacterium tuberculosis
-
Zhu, L., Zhang, Y., Teh, J.S., Zhang, J., Connell, N., Rubin, H. and Inouye, M. (2006) Characterization of mRNA interferases from Mycobacterium tuberculosis. J. Biol. Chem., 281, 18638-18643.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 18638-18643
-
-
Zhu, L.1
Zhang, Y.2
Teh, J.S.3
Zhang, J.4
Connell, N.5
Rubin, H.6
Inouye, M.7
-
4
-
-
27644590965
-
MazEF: A chromosomal toxin-antitoxin module that triggers programmed cell death in bacteria
-
Engelberg-Kulka, H., Hazan, R. and Amitai, S. (2005) mazEF: a chromosomal toxin-antitoxin module that triggers programmed cell death in bacteria. J. Cell Sci., 118, 4327-4332.
-
(2005)
J. Cell Sci.
, vol.118
, pp. 4327-4332
-
-
Engelberg-Kulka, H.1
Hazan, R.2
Amitai, S.3
-
5
-
-
17844370503
-
Prokaryotic toxin-antitoxin stress response loci
-
Gerdes, K., Christensen, S.K. and Løbner-Olesen, A. (2005) Prokaryotic toxin-antitoxin stress response loci. Nat. Rev. Microbiol., 3, 371-382.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 371-382
-
-
Gerdes, K.1
Christensen, S.K.2
Løbner-Olesen, A.3
-
6
-
-
34548496904
-
What is the benefit to Escherichia coli of having multiple toxin-antitoxin systems in its genome?
-
Tsilibaris, V., Maenhaut-Michel, G., Mine, N. and Van Melderen, L. (2007) What is the benefit to Escherichia coli of having multiple toxin-antitoxin systems in its genome? J. Bacteriol., 189, 6101-6108.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 6101-6108
-
-
Tsilibaris, V.1
Maenhaut-Michel, G.2
Mine, N.3
Van Melderen, L.4
-
7
-
-
0035937194
-
The regulation of the Escherichia coli mazEF promoter involves an unusual alternating palindrome
-
Marianovsky, I., Aizenman, E., Engelberg-Kulka, H. and Glaser, G. (2001) The regulation of the Escherichia coli mazEF promoter involves an unusual alternating palindrome. J. Biol. Chem., 276, 5975-5984.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 5975-5984
-
-
Marianovsky, I.1
Aizenman, E.2
Engelberg-Kulka, H.3
Glaser, G.4
-
8
-
-
0041355231
-
Characterization of the interactions within the mazEF addiction module of Escherichia coli
-
Zhang, J., Zhang, Y. and Inouye, M. (2003) Characterization of the interactions within the mazEF addiction module of Escherichia coli. J. Biol. Chem., 278, 32300-32306.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 32300-32306
-
-
Zhang, J.1
Zhang, Y.2
Inouye, M.3
-
9
-
-
0037738520
-
Crystal structure of the MazE/MazF complex:molecular bases of antidote-toxin recognition
-
Kamada, K., Hanaoka, F. and Burley, S.K. (2003) Crystal structure of the MazE/MazF complex:molecular bases of antidote-toxin recognition. Mol. Cell, 11, 875-884.
-
(2003)
Mol. Cell
, vol.11
, pp. 875-884
-
-
Kamada, K.1
Hanaoka, F.2
Burley, S.K.3
-
10
-
-
46949090318
-
The mRNA interferases, MazF-mt3 and MazF-mt7 from Mycobacterium tuberculosis target unique pentad sequences in single-stranded RNA
-
Zhu, L., Phadtare, S., Nariya, H., Ouyang, M., Husson, R.N. and Inouye, M. (2008) The mRNA interferases, MazF-mt3 and MazF-mt7 from Mycobacterium tuberculosis target unique pentad sequences in single-stranded RNA. Mol. Microbiol., 69, 559-569.
-
(2008)
Mol. Microbiol.
, vol.69
, pp. 559-569
-
-
Zhu, L.1
Phadtare, S.2
Nariya, H.3
Ouyang, M.4
Husson, R.N.5
Inouye, M.6
-
11
-
-
0242361323
-
MazF cleaves cellular mRNAs specifically at ACA to block protein synthesis in Escherichia coli
-
Zhang, Y., Zhang, J., Hoeflich, K.P., Ikura, M., Qing, G. and Inouye, M. (2003) MazF cleaves cellular mRNAs specifically at ACA to block protein synthesis in Escherichia coli. Mol. Cell, 12, 913-923.
-
(2003)
Mol. Cell
, vol.12
, pp. 913-923
-
-
Zhang, Y.1
Zhang, J.2
Hoeflich, K.P.3
Ikura, M.4
Qing, G.5
Inouye, M.6
-
12
-
-
0028908555
-
Intraphagosomal oxygen in stimulated macrophages
-
James, P.E., Grinberg, O.Y., Michaels, G. and Swartz, H.M. (1995) Intraphagosomal oxygen in stimulated macrophages. J. Cell Physiol., 163, 241-247.
-
(1995)
J. Cell Physiol.
, vol.163
, pp. 241-247
-
-
James, P.E.1
Grinberg, O.Y.2
Michaels, G.3
Swartz, H.M.4
-
13
-
-
0031914958
-
Cytokine activation leads to acidification and increases maturation of Mycobacterium avium-containing phagosomes in murine macrophages
-
Schaible, U.E., Sturgill-Koszycki, S., Schlesinger, P.H. and Russell, D.G. (1998) Cytokine activation leads to acidification and increases maturation of Mycobacterium avium-containing phagosomes in murine macrophages. J. Immunol., 160, 1290-1296.
-
(1998)
J. Immunol.
, vol.160
, pp. 1290-1296
-
-
Schaible, U.E.1
Sturgill-Koszycki, S.2
Schlesinger, P.H.3
Russell, D.G.4
-
14
-
-
2642649500
-
Effects of cytokines on mycobacterial phagosome maturation
-
Via, L.E., Fratti, R.A., McFalone, M., Pagan-Ramos, E., Deretic, D. and Deretic, V. (1998) Effects of cytokines on mycobacterial phagosome maturation. J. Cell Sci., 111, 897-905.
-
(1998)
J. Cell Sci.
, vol.111
, pp. 897-905
-
-
Via, L.E.1
Fratti, R.A.2
McFalone, M.3
Pagan-Ramos, E.4
Deretic, D.5
Deretic, V.6
-
15
-
-
0032508046
-
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
-
Cole, S.T., Brosch, R., Parkhill, J., Garnier, T., Churcher, C., Harris, D., Gordon, S.V., Eiglmeier, C., Gas, S., Barry, C.E. et al. (1998) Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature, 393, 537-544.
-
(1998)
Nature
, vol.393
, pp. 537-544
-
-
Cole, S.T.1
Brosch, R.2
Parkhill, J.3
Garnier, T.4
Churcher, C.5
Harris, D.6
Gordon, S.V.7
Eiglmeier, C.8
Gas, S.9
Barry, C.E.10
-
16
-
-
39749130935
-
Biochemical characterization of a chromosomal toxin-antitoxin system in Mycobacterium tuberculosis
-
Zhao, L. and Zhang, J. (2008) Biochemical characterization of a chromosomal toxin-antitoxin system in Mycobacterium tuberculosis. FEBS Lett., 582, 710-714.
-
(2008)
FEBS Lett.
, vol.582
, pp. 710-714
-
-
Zhao, L.1
Zhang, J.2
-
17
-
-
0032577570
-
DNA topoisomerase I from Mycobacterium smegmatis. An enzyme with distinct features
-
DOI 10.1074/jbc.273.22.13925
-
Bhaduri, T., Bagui, T.K., Sikder, D. and Nagaraja, V. (1998) DNA topoisomerase 1 from Mycobacterium smegmatis. An enzyme with distinct features. J. Biol. Chem., 273, 13925-13932. (Pubitemid 28268447)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.22
, pp. 13925-13932
-
-
Bhaduri, T.1
Bagui, T.K.2
Sikder, D.3
Nagaraja, V.4
-
18
-
-
33645085564
-
Indispensable, functionally complementing N and C-terminal domains constitute site-speciEc topoisomerase i
-
Jain, P. and Nagaraja, V. (2006) Indispensable, functionally complementing N and C-terminal domains constitute site-speciEc topoisomerase I. J. Mol. Biol., 357, 1409-1421.
-
(2006)
J. Mol. Biol.
, vol.357
, pp. 1409-1421
-
-
Jain, P.1
Nagaraja, V.2
-
19
-
-
0023433855
-
Supercoiling of the DNA template during transcription
-
Liu, L.F. and Wang, J.C. (1987) Supercoiling of the DNA template during transcription. Proc. Natl Acad. Sci. USA, 84, 7024-7027.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 7024-7027
-
-
Liu, L.F.1
Wang, J.C.2
-
20
-
-
0242268400
-
Genetic requirements for mycobacterial survival during infection
-
Sassetti, C.M. and Rubin, E.J. (2003) Genetic requirements for mycobacterial survival during infection. Proc. Natl Acad. Sci. USA, 100, 12989-12994.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 12989-12994
-
-
Sassetti, C.M.1
Rubin, E.J.2
-
21
-
-
66049136210
-
Archaeal eukaryote-like Orc1/Cdc6 initiators physically interact with DNA polymerase B1 and regulate its functions
-
Zhang, L., Zhang, L., Liu, Y., Yang, S., Gao, C., Gong, H., Feng, Y. and He, Z.G. (2009) Archaeal eukaryote-like Orc1/Cdc6 initiators physically interact with DNA polymerase B1 and regulate its functions. Proc. Natl Acad. Sci. USA, 106, 7792-7797.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 7792-7797
-
-
Zhang, L.1
Zhang, L.2
Liu, Y.3
Yang, S.4
Gao, C.5
Gong, H.6
Feng, Y.7
He, Z.G.8
-
22
-
-
67650082448
-
Dissecting transcription regulatory pathways through a new bacterial one-hybrid reporter system
-
Guo, M., Feng, H., Zhang, J., Wang, W., Li, Y., Gao, C., Chen, H., Feng, Y. and He, Z.G. (2009) Dissecting transcription regulatory pathways through a new bacterial one-hybrid reporter system. Genome Res., 19, 1301-1308.
-
(2009)
Genome Res.
, vol.19
, pp. 1301-1308
-
-
Guo, M.1
Feng, H.2
Zhang, J.3
Wang, W.4
Li, Y.5
Gao, C.6
Chen, H.7
Feng, Y.8
He, Z.G.9
-
23
-
-
65349157710
-
Uncovering new signaling proteins and potential drug targets through the interactome analysis of Mycobacterium tuberculosis
-
Cui, T., Zhang, L., Wang, X. and He, Z.G. (2009) Uncovering new signaling proteins and potential drug targets through the interactome analysis of Mycobacterium tuberculosis. BMC Genomics, 10, 118.
-
(2009)
BMC Genomics
, vol.10
, pp. 118
-
-
Cui, T.1
Zhang, L.2
Wang, X.3
He, Z.G.4
-
24
-
-
0024448151
-
Calculation of protein extinction coefficients from amino acid sequence data
-
Gill, S.C. and von Hippel, P.H. (1989) Calculation of protein extinction coefficients from amino acid sequence data. Anal. Biochem., 182, 319-326.
-
(1989)
Anal. Biochem.
, vol.182
, pp. 319-326
-
-
Gill, S.C.1
Von Hippel, P.H.2
-
25
-
-
34347333558
-
Transcriptional regulation of multi-drug tolerance and antibiotic-induced responses by the histone-like protein Lsr2 in M. tuberculosis
-
Colangeli, R., Helb, D., Vilcheze, C., Hazbon, M.H., Lee, C.G., Safi, H., Sayers, B., Sardone, I., Jones, M.B. and Fleischmann, R.D. (2007) Transcriptional regulation of multi-drug tolerance and antibiotic-induced responses by the histone-like protein Lsr2 in M. tuberculosis. PLoS Pathog., 3, e87.
-
(2007)
PLoS Pathog.
, vol.3
-
-
Colangeli, R.1
Helb, D.2
Vilcheze, C.3
Hazbon, M.H.4
Lee, C.G.5
Safi, H.6
Sayers, B.7
Sardone, I.8
Jones, M.B.9
Fleischmann, R.D.10
-
26
-
-
0030843047
-
The recombinant product of the Chryptomonas phi plastid gene hlpA is an architectural HU-like protein that promotes the assembly of complex nucleoprotein structures
-
Grasser, K.D., Ritt, C., Krieg, M., Fernandez, S., Alonso, J.C. and Grimm, R. (1997) The recombinant product of the Chryptomonas phi plastid gene hlpA is an architectural HU-like protein that promotes the assembly of complex nucleoprotein structures. Eur. J. Biochem., 249, 70-76.
-
(1997)
Eur. J. Biochem.
, vol.249
, pp. 70-76
-
-
Grasser, K.D.1
Ritt, C.2
Krieg, M.3
Fernandez, S.4
Alonso, J.C.5
Grimm, R.6
-
27
-
-
70349795296
-
Deciphering the distinct role for the metal coordination motif in the catalytic activity of Mycobacterium smegmatis topoisomerase i
-
Bhat, A.G., Leelaram, M.N., Hegde, S.M. and Nagaraja, V. (2009) Deciphering the distinct role for the metal coordination motif in the catalytic activity of Mycobacterium smegmatis topoisomerase I. J. Mol. Biol., 393, 788-802.
-
(2009)
J. Mol. Biol.
, vol.393
, pp. 788-802
-
-
Bhat, A.G.1
Leelaram, M.N.2
Hegde, S.M.3
Nagaraja, V.4
-
28
-
-
19744383611
-
Controlling gene expression in mycobacteria with anhydrotetracycline and Tet repressor
-
Ehrt, S., Guo, X.V., Hickey, C.M., Ryou, M., Monteleone, M., Riley, L.W. and Schnappinger, D. (2005) Controlling gene expression in mycobacteria with anhydrotetracycline and Tet repressor. Nucleic Acids Res., 33, e21.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Ehrt, S.1
Guo, X.V.2
Hickey, C.M.3
Ryou, M.4
Monteleone, M.5
Riley, L.W.6
Schnappinger, D.7
-
29
-
-
19744382790
-
Tetracycline-inducible gene regulation in mycobacteria
-
Blokpoel, M.C., Murphy, H.N., O'Toole, R., Wiles, S., Runn, E.S., Stewart, G.R., Young, D.B. and Robertson, B.D. (2005) Tetracycline-inducible gene regulation in mycobacteria. Nucleic Acids Res., 33, e22.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Blokpoel, M.C.1
Murphy, H.N.2
O'Toole, R.3
Wiles, S.4
Runn, E.S.5
Stewart, G.R.6
Young, D.B.7
Robertson, B.D.8
-
30
-
-
0027237298
-
Anhydrotetracycline, a novel effector for tetracycline controlled gene expression systems in eukaryotic cells
-
Gossen, M. and Bujard, H. (1993) Anhydrotetracycline, a novel effector for tetracycline controlled gene expression systems in eukaryotic cells. Nucleic Acids Res., 21, 4411-4412.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 4411-4412
-
-
Gossen, M.1
Bujard, H.2
-
31
-
-
0346492817
-
Persister cells and tolerance to antimicrobials
-
Keren, I., Kaldalu, N., Spoering, A., Wang, Y. and Lewis, K. (2004) Persister cells and tolerance to antimicrobials. FEMS Microbiol. Lett., 230, 13-18.
-
(2004)
FEMS Microbiol. Lett.
, vol.230
, pp. 13-18
-
-
Keren, I.1
Kaldalu, N.2
Spoering, A.3
Wang, Y.4
Lewis, K.5
-
32
-
-
0035173818
-
Biofilms and planktonic cells of Pseudomonas aeruginosa have similar resistance to killing by antimicrobials
-
Spoering, A.L. and Lewis, K. (2001) Biofilms and planktonic cells of Pseudomonas aeruginosa have similar resistance to killing by antimicrobials. J. Bacteriol., 183, 6746-6751.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 6746-6751
-
-
Spoering, A.L.1
Lewis, K.2
-
33
-
-
63349088873
-
Bacterial topoisomerase i as a target for discovery of antibacterial compounds
-
Tse-Dinh, Y.C. (2009) Bacterial topoisomerase I as a target for discovery of antibacterial compounds. Nucleic Acids Res., 37, 731-737.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 731-737
-
-
Tse-Dinh, Y.C.1
-
34
-
-
62649096815
-
Three Mycobacterium tuberculosis Rel toxin-antitoxin modules inhibit mycobacterial growth and are expressed in infected human macrophages
-
Korch, S.B., Contreras, H. and Clark-Curtiss, J.E. (2009) Three Mycobacterium tuberculosis Rel toxin-antitoxin modules inhibit mycobacterial growth and are expressed in infected human macrophages. J. Bacteriol., 191, 1618-1630.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 1618-1630
-
-
Korch, S.B.1
Contreras, H.2
Clark-Curtiss, J.E.3
-
35
-
-
2642672756
-
Topoisomerase i mutants: The gene on pBR322 that encodes resistance to tetracycline affects plasmid DNA supercoiling
-
Pruss, G.J. and Drlica, K. (1986) Topoisomerase I mutants: the gene on pBR322 that encodes resistance to tetracycline affects plasmid DNA supercoiling. Proc. Natl Acad. Sci. USA, 83, 8952-8956.
-
(1986)
Proc. Natl Acad. Sci. USA
, vol.83
, pp. 8952-8956
-
-
Pruss, G.J.1
Drlica, K.2
-
36
-
-
0030014783
-
DNA topoisomerases
-
Wang, J.C. (1996) DNA topoisomerases. Annu. Rev, Biochem., 65, 635-692.
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 635-692
-
-
Wang, J.C.1
-
37
-
-
33947701471
-
Exploring DNA topoisomerases as targets of novel therapeutic agents in the treatment of infectious diseases
-
Tse-Dinh, Y.C. (2007) Exploring DNA topoisomerases as targets of novel therapeutic agents in the treatment of infectious diseases. Infect. Disord. Drug Targets, 7, 3-9.
-
(2007)
Infect. Disord. Drug Targets
, vol.7
, pp. 3-9
-
-
Tse-Dinh, Y.C.1
-
38
-
-
55549147497
-
Hypernegative supercoiling inhibits growth by causing RNA degradation
-
Baaklini, I., Usongo, V., Nolent, F., Sanscartier, P., Hraiky, C., Drlica, K. and Drolet, M. (2008) Hypernegative supercoiling inhibits growth by causing RNA degradation. J. Bacteriol., 190, 7346-7356.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 7346-7356
-
-
Baaklini, I.1
Usongo, V.2
Nolent, F.3
Sanscartier, P.4
Hraiky, C.5
Drlica, K.6
Drolet, M.7
-
39
-
-
33645052194
-
Growth inhibition mediated by excess negative supercoiling: The interplay between transcription elongation, R-loop formation and DNA topology
-
Drolet, M. (2006) Growth inhibition mediated by excess negative supercoiling: the interplay between transcription elongation, R-loop formation and DNA topology. Mol. Microbiol., 59, 723-730.
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 723-730
-
-
Drolet, M.1
|