Arabidopsis Qa-SNARE SYP2 proteins localized to different subcellular regions function redundantly in vacuolar protein sorting and plant development

Plant Journal

Volumn 64, Issue 6, 2010, Pages 924-935

  Shirakawa, Makoto ^a   Ueda, Haruko ^a   Shimada, Tomoo ^a   Koumoto, Yasuko ^a   Shimada, Takashi L ^a   Kondo, Maki ^b   Takahashi, Taku ^c   Okuyama, Yudai ^d   Nishimura, Mikio ^b   Hara Nishimura, Ikuko ^a  

^a KYOTO UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE FOR BASIC BIOLOGY   (Japan)

^c OKAYAMA UNIVERSITY   (Japan)

^d DEPARTMENT OF BOTANY   (Japan)

Author keywords

Arabidopsis thaliana; myrosin cell; plant development; SNARE; vacuolar protein sorting; vein patterning

Indexed keywords

ARABIDOPSIS THALIANA; MYROSIN CELL; PLANT DEVELOPMENT; SNARE; VACUOLAR PROTEIN SORTING; VEIN PATTERNING;

ACTIVATION ANALYSIS;

PROTEINS;

ARABIDOPSIS PROTEIN; ATPEP12 PROTEIN, ARABIDOPSIS; SYNTAXIN; VAM3 PROTEIN, ARABIDOPSIS;

ARABIDOPSIS; ARTICLE; CELL DIFFERENTIATION; CELL VACUOLE; GENE INACTIVATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MUTATION; PHENOTYPE; PROTEIN TRANSPORT; TRANSGENIC PLANT;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL DIFFERENTIATION; GENE KNOCKOUT TECHNIQUES; MUTATION; PHENOTYPE; PLANTS, GENETICALLY MODIFIED; PROTEIN TRANSPORT; QA-SNARE PROTEINS; VACUOLES;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 78650092427     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2010.04394.x     Document Type: Article

References (38)

1. Abascal, F., Zardoya, R., and, Posada, D., (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics, 21, 2104-2105. (Pubitemid 40668057)
2. Akaike, H., (1974) A new look at the statistical model identification. IEEE Trans. Automat. Contr. 19, 716-723.
3. Andreasson, E., Bolt Jorgensen, L., Hoglund, A.S., Rask, L., and, Meijer, J., (2001) Different myrosinase and idioblast distribution in Arabidopsis and Brassica napus. Plant Physiol. 127, 1750-1763. (Pubitemid 34050038)
4. Assaad, F.F., Qiu, J.L., Youngs, H., et al. (2004) The PEN1 syntaxin defines a novel cellular compartment upon fungal attack and is required for the timely assembly of papillae. Mol. Biol. Cell, 15, 5118-5129. (Pubitemid 39392224)
5. Bassham, D.C., Gal, S., Da Silva Conceicao, A., and, Raikhel, N.V., (1995) An Arabidopsis syntaxin homologue isolated by functional complementation of a yeast pep12 mutant. Proc. Natl Acad. Sci. USA, 92, 7262-7266.
6. Clough, S.J., and, Bent, A.F., (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743. (Pubitemid 128418620)
7. Collins, N.C., Thordal-Christensen, H., Lipka, V., et al. (2003) SNARE-protein-mediated disease resistance at the plant cell wall. Nature, 425, 973-977. (Pubitemid 37376929)
8. Ebine, K., Okatani, Y., Uemura, T., et al. (2008) A SNARE complex unique to seed plants is required for protein storage vacuole biogenesis and seed development of Arabidopsis thaliana. Plant Cell, 20, 3006-3021.
9. Foresti, O., DaSilva, L.L., and, Denecke, J., (2006) Overexpression of the Arabidopsis syntaxin PEP12/SYP21 inhibits transport from the prevacuolar compartment to the lytic vacuole in vivo. Plant Cell, 18, 2275-2293. (Pubitemid 44484726)
10. Galtier, N., Guoy, M., and, Gautier, C., (1996) SEAVIEW and PHYLO-WIN: two graphic tools for sequence alignment and molecular phylogeny. Bioinformatics, 12, 543-548.
11. Gerrard, S.R., Mecklem, A.B., and, Stevens, T.H., (2000) The yeast endosomal t-SNARE, Pep12p, functions in the absence of its transmembrane domain. Traffic, 1, 45-55.
12. Guindon, S., and, Gascuel, O., (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704. (Pubitemid 37365050)
13. Hamaji, K., Nagira, M., Yoshida, K., et al. (2009) Dynamic aspects of ion accumulation by vesicle traffic under salt stress in Arabidopsis. Plant Cell Physiol. 50, 2023-2033.
14. Husebye, H., Chadchawan, S., Winge, P., Thangstad, O.P., and, Bones, A.M., (2002) Guard cell- and phloem idioblast-specific expression of thioglucoside glucohydrolase 1 (myrosinase) in Arabidopsis. Plant Physiol. 128, 1180-1188. (Pubitemid 34305772)
15. Jahn, R., and, Scheller, R.H., (2006) SNAREs-engines for membrane fusion. Nat. Rev. Mol. Cell Biol. 7, 631-643. (Pubitemid 44268209)
16. Kwon, C., Neu, C., Pajonk, S., et al. (2008) Co-option of a default secretory pathway for plant immune responses. Nature, 451, 835-840. (Pubitemid 351253164)
17. Larkin, M.A., Blackshields, G., Brown, N.P., et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics, 23, 2947-2948. (Pubitemid 350162903)
18. Lauber, M.H., Waizenegger, I., Steinmann, T., Schwarz, H., Mayer, U., Hwang, I., Lukowitz, W., and, Jurgens, G., (1997) The Arabidopsis KNOLLE protein is a cytokinesis-specific syntaxin. J. Cell Biol. 139, 1485-1493. (Pubitemid 28013669)
19. 2-containing vesicles with tonoplast and increased salt tolerance. Proc. Natl Acad. Sci. USA, 103, 18008-18013. (Pubitemid 44852276)
20. Li, L., Shimada, T., Takahashi, H., Ueda, H., Fukao, Y., Kondo, M., Nishimura, M., and, Hara-Nishimura, I., (2006) MAIGO2 is involved in exit of seed storage proteins from the endoplasmic reticulum in Arabidopsis thaliana. Plant Cell, 18, 3535-3547. (Pubitemid 46464910)
21. Matsushima, R., Hayashi, Y., Yamada, K., Shimada, T., Nishimura, M., and, Hara-Nishimura, I., (2003) The ER body, a novel endoplasmic reticulum-derived structure in Arabidopsis. Plant Cell Physiol. 44, 661-666. (Pubitemid 36953620)
22. Matsushima, R., Fukao, Y., Nishimura, M., and, Hara-Nishimura, I., (2004) NAI1 gene encodes a basic-helix-loop-helix-type putative transcription factor that regulates the formation of an endoplasmic reticulum-derived structure, the ER body. Plant Cell, 16, 1536-1549. (Pubitemid 38774247)
23. Nakagawa, T., Kurose, T., Hino, T., Tanaka, K., Kawamukai, M., Niwa, Y., Toyooka, K., Matsuoka, K., Jinbo, T., and, Kimura, T., (2007) Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation. J. Biosci. Bioeng. 104, 34-41. (Pubitemid 47223816)
24. Niihama, M., Uemura, T., Saito, C., Nakano, A., Sato, M.H., Tasaka, M., and, Morita, M.T., (2005) Conversion of functional specificity in Qb-SNARE VTI1 homologues of Arabidopsis. Curr. Biol. 15, 555-560. (Pubitemid 40413395)
25. Ohtomo, I., Ueda, H., Shimada, T., Nishiyama, C., Komoto, Y., Hara-Nishimura, I., and, Takahashi, T., (2005) Identification of an allele of VAM3/SYP22 that confers a semi-dwarf phenotype in Arabidopsis thaliana. Plant Cell Physiol. 46, 1358-1365. (Pubitemid 41219829)
26. Piper, R.C., Bryant, N.J., and, Stevens, T.H., (1997) The membrane protein alkaline phosphatase is delivered to the vacuole by a route that is distinct from the VPS-dependent pathway. J. Cell Biol. 138, 531-545.
27. Sanderfoot, A.A., Assaad, F.F., and, Raikhel, N.V., (2000) The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Plant Physiol. 124, 1558-1569.
28. Sanderfoot, A.A., Kovaleva, V., Bassham, D.C., and, Raikhel, N.V., (2001a) Interactions between syntaxins identify at least five SNARE complexes within the Golgi/prevacuolar system of the Arabidopsis cell. Mol. Biol. Cell, 12, 3733-3743. (Pubitemid 34001069)
29. Sanderfoot, A.A., Pilgrim, M., Adam, L., and, Raikhel, N.V., (2001b) Disruption of individual members of Arabidopsis syntaxin gene families indicates each has essential functions. Plant Cell, 13, 659-666. (Pubitemid 32265382)
30. Sato, M.H., Nakamura, N., Ohsumi, Y., Kouchi, H., Kondo, M., Hara-Nishimura, I., Nishimura, M., and, Wada, Y., (1997) The AtVAM3 encodes a syntaxin-related molecule implicated in the vacuolar assembly in Arabidopsis thaliana. J. Biol. Chem. 272, 24530-24535. (Pubitemid 27418665)
31. Shimada, T., Fuji, K., Tamura, K., Kondo, M., Nishimura, M., and, Hara-Nishimura, I., (2003) Vacuolar sorting receptor for seed storage proteins in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA, 100, 16095-16100. (Pubitemid 38021120)
32. Shimada, T.L., Shimada, T., and, Hara-Nishimura, I., (2010) A rapid and non-destructive screenable marker, FAST, for identifying transformed seeds of Arabidopsis thaliana. Plant J. 61, 519-528.
33. Shirakawa, M., Ueda, H., Shimada, T., Nishiyama, C., and, Hara-Nishimura, I., (2009) Vacuolar SNAREs function in the formation of the leaf vascular network by regulating auxin distribution. Plant Cell Physiol. 50, 1319-1328.
34. Tian, G.W., Mohanty, A., Chary, S.N., et al. (2004) High-throughput fluorescent tagging of full-length Arabidopsis gene products in planta. Plant Physiol. 135, 25-38. (Pubitemid 38653650)
35. Ueda, T., Uemura, T., Sato, M.H., and, Nakano, A., (2004) Functional differentiation of endosomes in Arabidopsis cells. Plant J. 40, 783-789. (Pubitemid 39623251)
36. Ueda, H., Nishiyama, C., Shimada, T., Koumoto, Y., Hayashi, Y., Kondo, M., Takahashi, T., Ohtomo, I., Nishimura, M., and, Hara-Nishimura, I., (2006) AtVAM3 is required for normal specification of idioblasts, myrosin cells. Plant Cell Physiol. 47, 164-175. (Pubitemid 43278256)
37. Uemura, T., Ueda, T., Ohniwa, R.L., Nakano, A., Takeyasu, K., and, Sato, M.H., (2004) Systematic analysis of SNARE molecules in Arabidopsis: dissection of the post-Golgi network in plant cells. Cell Struct. Funct. 29, 49-65. (Pubitemid 39206720)
38. Yano, D., Sato, M., Saito, C., Sato, M.H., Morita, M.T., and, Tasaka, M., (2003) A SNARE complex containing SGR3/AtVAM3 and ZIG/VTI11 in gravity-sensing cells is important for Arabidopsis shoot gravitropism. Proc. Natl Acad. Sci. USA, 100, 8589-8594. (Pubitemid 36842588)