Volatile organic compound production by organisms in the genus Ascocoryne and a re-evaluation of myco-diesel production by NRRL 50072

Microbiology

Volumn 156, Issue 12, 2010, Pages 3814-3829

  Griffin, Meghan A ^a   Spakowicz, Daniel J ^a   Gianoulis, Tara A ^b,c   Strobel, Scott A ^a  

^a YALE UNIVERSITY   (United States)

^b HARVARD UNIVERSITY   (United States)

^c HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL DERIVATIVE; ALKANE; ALKENE; CELLULOSE; DNA; ESTER; KETONE; SESQUITERPENE; VOLATILE ORGANIC COMPOUND;

AGAR MEDIUM; ANIMAL EXPERIMENT; ARTICLE; ASCOCORYNE; BIOFUEL PRODUCTION; CONTROLLED STUDY; CULTURE MEDIUM; DNA SEQUENCE; ENDOPHYTE; FUNGAL GENETICS; FUNGAL STRAIN; FUNGUS; FUNGUS CULTURE; FUNGUS GROWTH; FUNGUS ISOLATION; GENUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SPECIES DIFFERENCE;

ALCOHOLS; ALKANES; ASCOMYCOTA; BIOFUELS; CELLULOSE; INDUSTRIAL MICROBIOLOGY; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANTS; VOLATILE ORGANIC COMPOUNDS;

ASCOCORYNE; ASCOCORYNE SARCOIDES;

EID: 78650047995     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.041327-0     Document Type: Article

References (43)

1. Atsumi, S., Hanai, T. & Liao, J. C. (2008). Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels. Nature 451, 86-89.
2. Atsumi, S., Li, Z. & Liao, J. C. (2009). Acetolactate synthase from Bacillus subtilis serves as a 2-ketoisovalerate decarboxylase for isobutanol biosynthesis in Escherichia coli. Appl Environ Microbiol 75, 6306-6311.
3. Bunyard, B. A., Wang, Z., Malloch, D., Clayden, S. & Voitk, A. (2008). New North American Records for Ascocoryne turficola (Ascomycota: Helotiales). FUNGI Magazine 1, 23-31.
4. Christianson, D. W. (2008). Unearthing the roots of the terpenome. Curr Opin Chem Biol 12, 141-150.
5. Connor, M. R., Cann, A. F. & Liao, J. C. (2010). 3-Methyl-1-butanol production in Escherichia coli: random mutagenesis and two-phase fermentation. Appl Microbiol Biotechnol 86, 1155-1164.
6. Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32, 1792-1797.
7. Fiedler, K., Schutz, E. & Geh, S. (2001). Detection of microbial volatile organic compounds (MVOCs) produced by moulds on various materials. Int J Hyg Environ Health 204, 111-121.
8. Fortman, J. L., Chhabra, S., Mukhopadhyay, A., Chou, H., Lee, T. S., Steen, E. & Keasling, J. D. (2008). Biofuel alternatives to ethanol: pumping the microbial well. Trends Biotechnol 26, 375-381.
9. Hill, J., Nelson, E., Tilman, D., Polasky, S. & Tiffany, D. (2006). Environmental, economic, and energetic costs and benefits of biodiesel and ethanol biofuels. Proc Natl Acad Sci U S A 103, 11206-11210. (Pubitemid 44156497)
10. Korpi, A., Jarnberg, J. & Pasanen, A. L. (2009). Microbial volatile organic compounds. Crit Rev Toxicol 39, 139-193.
11. Ladygina, N., Dedyukhina, E. G. & Vainshtein, M. B. (2006). A review on microbial synthesis of hydrocarbons. Process Biochem 41, 1001-1014.
12. Larsen, T. O. & Frisvad, J. C. (1995). Characterization of volatile metabolites from 47 Penicillium taxa. Mycol Res 99, 1153-1166.
13. McAfee, B. J. & Taylor, A. (1999). A review of the volatile metabolites of fungi found on wood substrates. Nat Toxins 7, 283-303.
14. Minerdi, D., Bossi, S., Gullino, M. L. & Garibaldi, A. (2009). Volatile organic compounds: a potential direct long-distance mechanism for antagonistic action of Fusarium oxysporum strain MSA 35. Environ Microbiol 11, 844-854.
15. Müller, M. M. & Hallaksela, A. M. (1994). Variation in combined fatty acid and sterol profiles of Ascocoryne, Nectria, and Neobulgariastrains isolated from Norway spruce. Eur J Forest Pathol 24, 11-19.
16. Müller, M. M. & Hallaksela, A. M. (2000). Fungal diversity in Norway spruce: a case study. Mycol Res 104, 1139-1145.
17. Müller, M. M., Kantola, R. & Kitunen, V. (1994). Combining sterol and fatty-acid profiles for the characterization of fungi. Mycol Res 98, 593-603.
18. Paranagama, P. A., Wijeratne, E. M. & Gunatilaka, A. A. (2007). Uncovering biosynthetic potential of plant-associated fungi: effect of culture conditions on metabolite production by Paraphaeosphaeria quadriseptata and Chaetomium chiversii. J Nat Prod 70, 1939-1945.
19. Pavlidis, T., Ilieva, M., Bencheva, S. & Stancheva, J. (2005). Researches on wood-destroying fungi division Ascomycota, classis Ascomycetes. Matica Srpska Proc Nat Sci 109, 143-148.
20. Peralta-Yahya, P. P. & Keasling, J. D. (2010). Advanced biofuel production in microbes. Biotechnol J 5, 147-162.
21. Pinkerton, F. & Strobel, G. (1976). Serinol as an activator of toxin production in attenuated cultures of Helminthosporium sacchari. Proc Natl Acad Sci U S A 73, 4007-4011.
22. Rambaut, A. (2008). FigTree: Tree Figure Drawing Tool, version 1.1.2. Available at http://tree.bio.ed.ac.uk/software/figtree/. Institute of Evolutionary Biology, University of Edinburgh, UK.
23. Rehner, S. A. & Samuels, G. J. (1994). Taxonomy and phylogeny of Gliocladium analyzed from nuclear large subunit ribosomal DNA-sequences. Mycol Res 98, 625-634.
24. Roll-Hansen, F. & Roll-Hansen, H. (1979). Ascocoryne sarcoides and Ascocoryne cylichnium. Descriptions and comparison. Norw J Bot 26, 193-206.
25. Roll-Hansen, F. & Roll-Hansen, H. (1980). Microorganisms which invade Picea abies in seasonal stem wounds. II. Ascomycetes, fungi imperfecti, and bacteria. General discussion, Hymenomycetes included. Eur J Forest Pathol 10, 396-410.
26. Ronquist, F. & Huelsenbeck, J. P. (2003). MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.
27. Rude, M. A. & Schirmer, A. (2009). New microbial fuels: a biotech perspective. Curr Opin Microbiol 12, 274-281.
28. Schuchardt, S. & Kruse, H. (2009). Quantitative volatile metabolite profiling of common indoor fungi: relevancy for indoor air analysis. J Basic Microbiol 49, 350-362.
29. Schulz, S. & Dickschat, J. S. (2007). Bacterial volatiles: the smell of small organisms. Nat Prod Rep 24, 814-842.
30. Setkova, L., Risticevic, S. & Pawliszyn, J. (2007). Rapid headspace solid-phase microextraction-gas chromatographic-time-of-flight mass spectrometric method for qualitative profiling of ice wine volatile fraction. I. Method development and optimization. J Chromatogr A 1147, 213-223. (Pubitemid 46466831)
31. Smith, S. A. & Dunn, C. W. (2008). Phyutility: a phyloinformatics tool for trees, alignments and molecular data. Bioinformatics 24, 715-716.
32. Stinson, M., Ezra, D., Hess, W. M., Sears, J. & Strobel, G. (2003). An endophytic Gliocladium sp. of Eucryphia cordifolia producing selective volatile antimicrobial compounds. Plant Sci 165, 913-922.
33. Strobel, G. (2006). Muscodor albus and its biological promise. J Ind Microbiol Biotechnol 33, 514-522.
34. Strobel, G. A., Dirkse, E., Sears, J. & Markworth, C. (2001). Volatile antimicrobials from Muscodor albus, a novel endophytic fungus. Microbiology 147, 2943-2950. (Pubitemid 33076983)
35. Strobel, G. A., Knighton, B., Kluck, K., Ren, Y., Livinghouse, T., Griffin, M., Spakowicz, D. & Sears, J. (2008). The production of myco-diesel hydrocarbons and their derivatives by the endophytic fungus Gliocladium roseum (NRRL 50072). Microbiology 154, 3319-3328.
36. Tholl, D., Chen, F., Petri, J., Gershenzon, J. & Pichersky, E. (2005). Two sesquiterpene synthases are responsible for the complex mixture of sesquiterpenes emitted from Arabidopsis flowers. Plant J 42, 757-771.
37. Van Lancker, F., Adams, A., Delmulle, B., De Saeger, S., Moretti, A., Van Peteghem, C. & De Kimpe, N. (2008). Use of headspace SPME-GC- MS for the analysis of the volatiles produced by indoor molds grown on different substrates. J Environ Monit 10, 1127-1133.
38. Wang, Z., Binder, M., Schoch, C. L., Johnston, P. R., Spatafora, J. W. & Hibbett, D. S. (2006). Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): a nuclear rDNA phylogeny. Mol Phylogenet Evol 41, 295-312.
39. Waterhouse, A. M., Procter, J. B., Martin, D. M., Clamp, M. & Barton, G. J. (2009). Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. Bioinformatics 25, 1189-1191.
40. Wheatley, R., Hackett, Ch., Bruce, A. & Kundzewicz, A. (1997). Effect of substrate composition on production of volatile organic compounds from Trichoderma spp. inhibitory to wood decay fungi. Int Biodeterior Biodegrad 39, 199-205.
41. White, T. J., Burns, T., Lee, S. & Taylor, J. (1990). Amplification and sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR protocols: A guide to methods and applications, pp. 315-322. Edited by M. A. Innis, D. H. Gelfand, J. J. Sninsky & T. J. White. San Diego: Academic Press.
42. Wihlborg, R., Pippitt, D. & Marsili, R. (2008). Headspace sorptive extraction and GC-TOF/MS for the identification of volatile fungal metabolites. J Microbiol Methods 75, 244-250.
43. Zhang, K., Sawaya, M. R., Eisenberg, D. S. & Liao, J. C. (2008). Expanding metabolism for biosynthesis of nonnatural alcohols. Proc Natl Acad Sci U S A 105, 20653-20658.