Halostagnicola kamekurae sp. nov., an extremely halophilic archaeon from solar salt

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 12, 2010, Pages 2828-2831

  Nagaoka, Shuhei ^a   Minegishi, Hiroaki ^a   Echigo, Akinobu ^a   Usami, Ron ^a  

^a TOYO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; GLYCOLIPID; MAGNESIUM SULFATE; PHOSPHATIDYLGLYCEROL; RNA 16S; SODIUM CHLORIDE; WATER; ARCHAEAL DNA; INORGANIC SALT; LIPID;

ARCHAEBACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; GENE SEQUENCE; HALOPHILIC ARCHAEON; HALOSTAGNICOLA KAMEKURAE; JAPAN; LIPID ANALYSIS; MESOPHILIC BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHILIPPINES; PRIORITY JOURNAL; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; HALOBACTERIALES; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY;

ARCHAEA;

BASE COMPOSITION; DNA, ARCHAEAL; HALOBACTERIACEAE; LIPIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHILIPPINES; PHYLOGENY; RNA, RIBOSOMAL, 16S; SALTS; SEQUENCE ANALYSIS, DNA;

EID: 78650046997     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.014449-0     Document Type: Article

References (20)

1. Castillo, A. M., Gutierrez, M. C., Kamekura, M., Xue, Y., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2006). Halostagnicola larsenii gen. nov., sp. nov., an extremely halophilic archaeon from a saline lake in Inner Mongolia, China. Int J Syst Evol Microbiol 56, 1519-1524. (Pubitemid 44097159)
2. Cline, S. W., Schalkwyk, L. C. & Doolittle, W. F. (1989). Transformation of the archaebacterium Halobacterium volcanii with genomic DNA. J Bacteriol 171, 4987-4991.
3. Dussault, H. P. (1955). An improved technique for staining red halophilic bacteria. J Bacteriol 70, 484-485.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229. (Pubitemid 19175038)
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Fukushima, T., Usami, R. & Kamekura, M. (2007). A traditional Japanese-style salt field is a niche for haloarchaeal strains that can survive in 0.5% salt solution. Saline Syst 3, 2.
7. Gonzalez, C., Gutierrez, C. & Ramírez, C. (1978). Halobacterium vallismortis sp. nov. An amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium. Can J Microbiol 24, 710-715. (Pubitemid 8380304)
8. VP (effective publication: Grant and Larsen 1989a, 2216). In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 294-299. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
9. Kamekura, M. (1993). Lipids of extreme halophiles. In The Biology of Halophilic Bacteria, pp. 135-161. Edited by R. H. Vreeland & L. I. Hochstein. Boca Raton, FL: CRC Press.
10. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241. (Pubitemid 14058168)
11. Miyazaki, S., Sugawara, H., Gojobori, T. & Tateno, Y. (2003). DNA Data Bank of Japan (DDBJ) in XML. Nucleic Acids Res 31, 13-16. (Pubitemid 36150324)
12. Oren, A., Ventosa, A. & Grant, W. D. (1997). Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47, 233-238. (Pubitemid 27027255)
13. Oren, A., Arahal, D. R. & Ventosa, A. (2009). Emended descriptions of genera of the family Halobacteriaceae. Int J Syst Evol Microbiol 59, 637-642.
14. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Savage, K. N., Krumholz, L. R., Oren, A. & Elshahed, M. S. (2008). Halosarcina pallida gen. nov., sp. nov., a halophilic archaeon from a low-salt, sulfide-rich spring. Int J Syst Evol Microbiol 58, 856-860.
16. Smibert, R. M. & Krieg, N. R. (1981). General characterization. In Manual of Methods for General Microbiology, pp. 409-443. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
17. Stackebrandt, E. & Ebers, J. (2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33, 152-155.
18. Stamatakis, A., Ludwig, T. & Meier, H. (2005). RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21, 456-463. (Pubitemid 40310232)
19. Tamaoka, J. (1994). Determination of DNA base composition. In Chemical Methods in Prokaryotic Systematics, pp. 463-470. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
20. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.