Analysis of metal ion dependence in glmS ribozyme self-cleavage and coenzyme binding

ChemBioChem

Volumn 11, Issue 18, 2010, Pages 2567-2571

  Klawuhn, Kevin ^a   Jansen, Joshua A ^a   Souchek, Joshua ^a   Soukup, Garrett A ^b   Soukup, Juliane K ^a  

^a CREIGHTON UNIVERSITY   (United States)

^b CREIGHTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Metalloenzymes; Molecular recognition; Ribozymes; RNA; Structure activity relationships

Indexed keywords

GLMS ENZYME; METAL ION; RIBOZYME; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; CATALYSIS; ENZYME ACTIVITY; ENZYME BINDING; ENZYME STRUCTURE; PRIORITY JOURNAL;

BACILLUS CEREUS; BACTERIAL PROTEINS; COENZYMES; GLUCOSAMINE; GLUCOSE-6-PHOSPHATE; METALS; PROTEIN BINDING; RNA, CATALYTIC;

BACTERIA (MICROORGANISMS);

EID: 78650028802     PISSN: 14394227     EISSN: 14397633     Source Type: Journal    
DOI: 10.1002/cbic.201000544     Document Type: Article

References (32)

1. W. C. Winkler, A. Nahvi, A. Roth, J. A. Collins, R. R. Breaker, Nature 2004, 428, 281-286.
2. W. C. Winkler, R. R. Breaker, Annu. Rev. Microbiol. 2005, 59, 487-517;
3. E. Nudler, A. S. Mironov, Trends Biochem. Sci. 2004, 29, 11-17.
4. T. J. McCarthy, M. A. Plog, S. A. Floy, J. A. Jansen, J. K. Soukup, G. A. Soukup, Chem. Biol. 2006, 13, 1221-1226.
5. J. A. Collins, I. Irnov, S. Baker, W. C. Winkler, Genes Dev. 2007, 21, 3356-3368.
6. D. J. Klein, A. R. Ferré-D'Amaré, Science 2006, 313, 1752-1756.
7. D. J. Klein, M. D. Been, A. Ferré-D'Amaré, J. Am. Chem. Soc. 2007, 129, 14858-14859.
8. D. J. Klein, S. R. Wilkinson, M. D. Been, A. R. Ferré-D'Amaré, J. Mol. Biol. 2007, 373, 178-189.
9. J. C. Cochrane, S. V. Lipchock, S. A. Strobel, Chem. Biol. 2007, 14, 97-105.
10. J. C. Cochrane, S. V. Lipchock, K. D. Smith, S. A. Strobel, Biochemistry 2009, 48, 3239-3246.
11. R. A. Tinsley, J. R. Furchak, N. G. Walter, RNA 2007, 13, 468-477.
12. K. J. Hampel, M. M. Tinsley, Biochemistry 2006, 45, 7861-7871.
13. J. A. Jansen, T. J. McCarthy, G. A. Soukup, J. K. Soukup, Nat. Struct. Mol. Biol. 2006, 13, 517-523.
14. A. Roth, A. Nahvi, M. Lee, I. Jona, R. R. Breaker, RNA 2006, 12, 607-619.
15. G. A. Soukup, J. K. Soukup in Non-Protein Coding RNAs (Eds.: R. Batey, N. Walter, S. Woodson), Springer, Berlin, 2009, pp. 129-143.
16. R. K. Sigel, A. M. Pyle, Chem. Rev. 2007, 107, 97-113.
17. B. Song, J. Zhao, R. Griesser, C. Meiser, H. Sigel, B. Lippart, Chem. Eur. J. 1999, 5, 2374-2387.
18. M. D. Smith, R. Mehdizadeh, J. E. Olive, R. A. Collins, RNA 2008, 14, 1942-1949.
19. J. L. Boots, M. D. Canny, E. Azimi, A. Pardi, RNA 2008, 14, 2212-2222.
20. J. Schnabl, R. K. O. Sigel, Curr. Opin. Chem. Biol. 2010, 14, 269-275.
21. H. Sigel, R. Griesser, Chem. Soc. Rev. 2005, 34, 875-900.
22. E. Freisinger, R. K. O. Sigel, Coord. Chem. Rev. 2007, 251, 1834-1851.
23. M. V. Krasovska, J. Sefcikova, K. Reblova, B. Schneider, N. G. Walter, J. Sponer, Biophys. J. 2006, 91, 626-638.
24. A. Ke, F. Ding, J. D. Batchelor, J. A. Doudna, Structure 2007, 15, 281-287.
25. J. K. Fredericksen, R. Fong, J. A. Piccirilli in Nucleic Acid-Metal Ion Interactions (Ed.: N. V. Hud), RSC, Cambridge, 2009, pp. 260-306.
26. R. Shannon, Acta Crystallogr. Sect. A Cryst. Phys. Diffr. Theor. Gen. Crystallogr. 1976, 32, 751.
27. A. A. Rashin, B. Honig, J. Phys. Chem. 1985, 89, 5588.
28. A. L. Feig, O. C. Uhlenbeck in The RNA World, 2nd ed. (Eds.: R. F. Gesteland, T. R. Cech, J. F. Atkins), Cold Spring Harbor Laboratory Press, New York, 1999, pp. 287-319.
29. D. J. Richens in The Chemistry of Aqua Ions, Wiley, New York, 1997.
30. J. E. Huheey in Inorganic Chemistry, 3rd ed., Harper & Row, New York, 1983.
31. R. G. Pearson, Inorg. Chem. 1988, 27, 734.
32. R. G. Parr, R. G. Pearson, J. Am. Chem. Soc. 1983, 105, 7512-7516.