The repeatability of adaptive radiation during long-term experimental evolution of Escherichia coli in a multiple nutrient environment

PLoS ONE

Volumn 5, Issue 12, 2010, Pages

  Saxer, Gerda ^a,b,c   Doebeli, Michael ^b   Travisano, Michael ^a,d  

^a University of Houston   (United States)

^b UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^c RICE UNIVERSITY   (United States)

^d UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTIVE RADIATION; ARTICLE; BACTERIUM COLONY; BACTERIUM COMPETENCE; COMPETITIVE ABILITY; CONTROLLED STUDY; ESCHERICHIA COLI; EVOLUTIONARY ADAPTATION; EVOLUTIONARY RATE; EXPERIMENTAL MODEL; GENETIC SELECTION; GENETIC TRAIT; GENETIC VARIABILITY; LAST COMMON ANCESTOR; LONG TERM EXPOSURE; MICROBIAL ACTIVITY; MICROBIAL DIVERSITY; MICROBIAL MORPHOLOGY; MICROCOSM; MORPHOTYPE; NONHUMAN; NUTRIENT DYNAMICS; RADIATION EXPOSURE; REPRODUCIBILITY; ADAPTATION; BACTERIAL PHENOMENA AND FUNCTIONS; BIODIVERSITY; ECOLOGY; ENVIRONMENT; GENETICS; METABOLISM; MOLECULAR EVOLUTION; PHENOTYPE; STATISTICS;

ESCHERICHIA COLI;

ADAPTATION, PHYSIOLOGICAL; BACTERIAL PHYSIOLOGICAL PHENOMENA; BIODIVERSITY; ECOLOGY; ENVIRONMENT; ESCHERICHIA COLI; EVOLUTION, MOLECULAR; GENETIC VARIATION; PHENOTYPE; REPRODUCIBILITY OF RESULTS; STOCHASTIC PROCESSES;

EID: 78649977942     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0014184     Document Type: Article

References (53)

1. Schluter D (2000) The Ecology of Adaptive Radiation. Oxford: Oxford University Press.
2. Allender CJ, Seehausen O, Knight ME, Turner GF, Maclean N (2003) Divergent selection during speciation of Lake Malawi cichlid fishes inferred from parallel radiations in nuptial coloration. Proceedings of the National Academy of Sciences of the United States of America 100: 14074-14079.
3. Losos JB, Jackman TR, Larson A, de Queiroz K, Rodriguez-Schettino L (1998) Contingency and determinism in replicated adaptive radiations of island lizards. Science 279: 2115-2118.
4. Schluter D (1996) Ecological causes of adaptive radiation. American Naturalist 148: S40-S64.
5. Monod J (1971) Chance and Necessity. New York: Knopf.
6. Travisano M, Vasi F, Lenski RE (1995) Long-term experimental evolution in Escherichia coli III: Variation among replicate populations in correlated responses to novel environments. Evolution 49: 189-200.
7. Wahl LM, Krakauer DC (2000) Models of experimental evolution: The role of genetic chance and selective necessity. Genetics 156: 1437-1448.
8. Chan KMA, Moore BR (2002) Whole-tree methods for detecting differential diversification rates. Systematic Biology 51: 855-865.
9. Rundle HD, Nagel L, Boughman JW, Schluter D (2000) Natural selection and parallel speciation in sympatric sticklebacks. Science 287: 306-308.
10. Schluter D, Clifford EA, Nemethy M, McKinnon JS (2004) Parallel evolution and inheritance of quantitative traits. American Naturalist 163: 809-822.
11. Hendry AP, Taylor EB, McPhail JD (2002) Adaptive divergence and the balance between selection and gene flow: Lake and stream stickleback in the misty system. Evolution 56: 1199-1216.
12. Friesen ML, Saxer G, Travisano M, Doebeli M (2004) Experimental evidence for sympatric ecological diversification due to frequency-dependent competition in Escherichia coli. Evolution 58: 245-260.
13. Saxer G, Doebeli M, Travisano M (2009) Spatial structure leads to ecological breakdown and loss of diversity. Proceedings of the Royal Society B-Biological Sciences 276: 2065-2070.
14. Spencer CC, Saxer G, Travisano M, Doebeli M (2007) Seasonal resource oscillations maintain diversity in bacterial microcosms. Evolutionary Ecology Research 9: 775-787.
15. Tyerman J, Havard N, Saxer G, Travisano M, Doebeli M (2005) Unparallel diversification in bacterial microcosms. Proceedings of the Royal Society BBiological Sciences 272: 1393-1398.
16. Spencer CC, Bertrand M, Travisano M, Doebeli M (2007) Adaptive diversification in genes that regulate resource use in Escherichia coli. Plos Genetics 3: 6.
17. Helling RB, Vargas CN, Adams J (1987) Evolution of Escherichia coli during growth in a constant environment. Genetics 116: 349-358.
18. Miller JH (1972) Experiments in molecular genetics. New York: Cold Spring Harbor Laboratory Press.
19. Rozen DE, Lenski RE (2000) Long-term experimental evolution in Escherichia coli VIII: Dynamics of a balanced polymorphism. American Naturalist 155: 24-35.
20. Levene H (1953) Genetic equilibrium when more than one ecological niche is available. American Naturalist 87: 331-333.
21. Dieckmann U, Doebeli M (1999) On the origin of species by sympatric speciation. Nature 400: 354-357.
22. Lenski RE, Rose MR, Simpson SC, Tadler SC (1991) Long-term experimental evolution in Escherichia coli I: Adaptation and divergence during 2,000 generations. American Naturalist 138: 1315-1341.
23. Lenski RE, Travisano M (1994) Dynamics of adaptation and diversification: A 10,000-generation experiment with bacterial populations. Proceedings of the National Academy of Sciences of the United States of America 91: 6808-6814.
24. Travisano M, Mongold JA, Bennett AF, Lenski RE (1995) Experimental test of the roles of adaptation, chance and history in evolution. Science 267: 87-90.
25. Haldane JBS (1949) Suggestions as to quantitative measurement of rates of evolution. Evolution 3: 51-56.
26. Travisano M (1997) Long-term experimental evolution in Escherichia coli V: Environmental constraints on adaptation and divergence. Genetics 146: 471-479.
27. Vasi F, Travisano M, Lenski RE (1994) Long-term experimental evolution in Escherichia coli II: Changes in life-history traits during adaptation to a seasonal environment. American Naturalist 144: 432-456.
28. Szafraniec K, Borts RH, Korona R (2001) Environmental stress and mutational load in diploid strains of the yeast Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America 98: 1107-1112.
29. Rosenzweig RF, Sharp RR, Treves DS, Adams J (1994) Microbial evolution in a simple unstructured environment: Genetic differentiation in Escherichia coli. Genetics 137: 903-917.
30. MacLean RC, Bell G (2002) Experimental adaptive radiation in Pseudomonas. American Naturalist 160: 569-581.
31. Tyerman J, Bertrand M, Spencer CC, Doebeli M (2008) Experimental demonstration of ecological character displacement. BMC Evol Biol 8: 34.
32. Wright S (1988) Surfaces of selective value revisited. American Naturalist 131: 115-123.
33. Cooper TF, Lenski RE (2010) Experimental evolution with E.coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations. BMC Evol Biol 10: 11.
34. Johnson PA, Lenski RE, Hoppensteadt FC (1995) Theoretical analysis of divergence in mean fitness between initially identical populations. Proceedings of the Royal Society of London Series B-Biological Sciences 259: 125-130.
35. Haldane JBS (1927) A mathematical theory of natural and artificial selection, Part V: Selection and mutation. Proceedings of the Cambridge Philosophical Society 23: 838-844.
36. Burch CL, Chao L (1999) Evolution by small steps and rugged landscapes in the RNA virus 6. Genetics 151: 921-927.
37. Travisano M (2009) Long-term experimental evolution and adaptive radiation. In: Garland TJ, Rose MR, eds. Experimental Evolution: Concepts, Methods, and Applications of Selection Experiments. Berkely and Los Angeles, California: University of California Press. 752 p.
38. Cooper TF, Rozen DE, Lenski RE (2003) Parallel changes in qene expression after 20,000 generations of evolution in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America 100: 1072-1077.
39. Doebeli M, Dieckmann U (2000) Evolutionary branching and sympatric speciation caused by different types of ecological interactions. American Naturalist 156: S77-S101.
40. Travisano M, Lenski RE (1996) Long-term experimental evolution in Escherichia coli IV: Targets of selection and the specificity of adaptation. Genetics 143: 15-26.
41. Cooper VS, Lenski RE (2000) The population genetics of ecological specialization in evolving Escherichia coli populations. Nature 407: 736-739.
42. Hartl DL, Dykhuizen DE, Dean AM (1985) Limits of adaptation - the evolution of selective neutrality. Genetics 111: 655-674.
43. Crow JF, Kimura M (1970) An Introduction to Population Genetics Theory. New York: Harper & Row Pubishers. 591 p.
44. Orr HA, Turelli M (2001) The evolution of postzygotic isolation: Accumulating Dobzhansky-Muller incompatibilities. Evolution 55: 1085-1094.
45. Rainey PB, Travisano M (1998) Adaptive radiation in a heterogeneous environment. Nature 394: 69-72.
46. Buckling A, Kassen R, Bell G, Rainey PB (2000) Disturbance and diversity in experimental microcosms. Nature 408: 961-964.
47. Kassen R, Buckling A, Bell G, Rainey PB (2000) Diversity peaks at intermediate productivity in a laboratory microcosm. Nature 406: 508-512.
48. McDonald MJ, Gehrig SM, Meintjes PL, Zhang XX, Rainey PB (2009) Adaptive divergence in experimental populations of Pseudomonas fluorescens. IV. Genetic constraints guide evolutionary trajectories in a parallel adaptive radiation. Genetics 183: 1041-1053.
49. MacLean RC, Bell G (2003) Divergent evolution during an experimental adaptive radiation. Proceedings of the Royal Society of London Series BBiological Sciences 270: 1645-1650.
50. Blount ZD, Borland CZ, Lenski RE (2008) Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America 105: 7899-7906.
51. Levin BR, Stewart FM, Chao L (1977) Resource-limited growth, competition, and predation: A model and experimental studies with bacteria and bacteriophage. American Naturalist 111: 3-24.
52. Sokal RR, Rohlf FJ (1995) Biometry. New York: W.H. Freeman and Co.
53. Dykhuizen DE, Hartl DL (1983) Selection in chemostats. Microbiological Reviews 47: 150-168.