Microbial community analysis of perchlorate-reducing cultures growing on zero-valent iron

Journal of Hazardous Materials

Volumn 185, Issue 2-3, 2011, Pages 669-676

  Son, Ahjeong ^a   Schmidt, Carl J ^b   Shin, Hyejin ^c   Cha, Daniel K ^b  

^a AUBURN UNIVERSITY   (United States)

^b UNIVERSITY OF DELAWARE   (United States)

^c AUBURN UNIVERSITY   (United States)

Author keywords

Chlorite dismutase (cld) gene; FAME; Perchlorate; Phylogenetic analysis; Zero valent iron

Indexed keywords

CHLORITE DISMUTASE (CLD) GENE; FAME; PERCHLORATE; PHYLOGENETIC ANALYSIS; ZERO-VALENT IRON;

ELECTROPHORESIS; ESTERS; FATTY ACIDS; GENES; POLYMERASE CHAIN REACTION; PRINCIPAL COMPONENT ANALYSIS;

METAL ANALYSIS;

BACTERIAL PROTEIN; CHLORITE DISMUTASE; FATTY ACID; FATTY ACID ESTER; IRON; PERCHLORATE; UNCLASSIFIED DRUG;

BACTERIUM; CHEMOTAXONOMY; CHLORITE; ELECTROKINESIS; ELECTRON; ENZYME ACTIVITY; FATTY ACID; GENETIC ANALYSIS; HYDROGEN; IRON; MICROBIAL COMMUNITY; MOLECULAR ANALYSIS; PERCHLORATE; PHYLOGENETICS; POLYMERASE CHAIN REACTION;

ARTICLE; BACTERIUM; BATCH REACTOR; CONTROLLED STUDY; DECHLOROSPIRILLUM; DENATURING GRADIENT GEL ELECTROPHORESIS; IDEONELLA DECHLORATANS; MICROBIAL COMMUNITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PRINCIPAL COMPONENT ANALYSIS; SEQUENCE ALIGNMENT;

BACTERIA, ANAEROBIC; BASE SEQUENCE; BIOREACTORS; DNA PRIMERS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; IRON; PERCHLORIC ACID; PHYLOGENY; POLYMERASE CHAIN REACTION; PRINCIPAL COMPONENT ANALYSIS;

EID: 78649947512     PISSN: 03043894     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jhazmat.2010.09.070     Document Type: Article

References (55)

1. Miller J.P., Logan B.E. Sustained perchlorate degradation in an autotrophic, gas-phase, packed-bed bioreactor. Environ. Sci. Technol. 2000, 34:3018-3022.
2. Urbansky E.T. Perchlorate chemistry: implications for analysis and remediation. Remediation J. 1998, 2:81-95.
3. Logan B.E. A review of chlorate and perchlorate respiring microorganisms. Bioremediation J. 1998, 2:69-79.
4. U.S.EPA Known perchlorate releases in the U.S. March, 25 2005.
5. U.S.EPA Known perchlorate releases in the U.S. March, 25 2005, http://www.epa.gov/fedfac/pdf/detec0305.pdf.
6. Kim K., Logan B.E. Microbial reduction of perchlorate in pure and mixed culture packed-bed bioreactors. Water Res. 2001, 35:3071-3076.
7. Srinivasan R., Sorial G.A. Treatment of perchlorate in drinking water: a critical review. Separ. Purif. Technol. 2009, 69:7-21.
8. U.S.GAO Perchlorate: EPA does not systematically track incidents of contamination 2007, http://www.gao.gov/new.items/d07797t.pdf.
9. Moore A.M., De Leon C.H., Young M. Rate and extent of aqueous perchlorate removal by iron surfaces. Environ. Sci. Technol. 2003, 37:3189-3198.
10. Espenson J.H. The problem and perversity of perchlorate. Perchlorate in the Environment 2000, 1-8. Kluwer Academic/Plenum Publishers, New York. E.T. Urbansky (Ed.).
11. Xu J., Song Y., Min B., Steinberg L., Logan B.E. Microbial degradation of perchlorate: principles and applications. Environ. Eng. Sci. 2003, 20:405-422.
12. Soltis D. Microbiological process removes rocket fuel ingredient from drinking water. Water Eng. Manage. 1998, 145:7-23.
13. Motzer W.E. Perchlorate: problems, detection, and solutions. Environ. Forensics 2001, 2:301-311.
14. Coates J.D., Michaelidou U., Bruce R.A., O'Connor S.M., Crespi J.N., Achenbach L.A. Ubiquity and diversity of dissimilatory (per)chlorate-reducing bacteria. Appl. Environ. Microbiol. 1999, 65:5234-5241.
15. O'Connor S.M., Coates J.D. Universal immunoprobe for (per)chlorate-reducing bacteria. Appl. Environ. Microbiol. 2002, 68:3108-3113.
16. Rikken G.B., Kroon A.G.M., van Ginkel C.G. Transformation of (per)chlorate into chloride by a newly isolated bacterium: reduction and dismutation. Appl. Microbial. Biotechnol. 1996, 45:420-426.
17. Thorell H.D., Stenklo K., Karlsson J., Nilsson T. A gene clusster for chlorate metabolism in Ideonella dechloratans. Appl. Environ. Microbiol. 2003, 69:5585-5592.
18. van Ginkel C.G., Rikken G.B., Kroon A.G.M., Kengen S.W. Purification and characterization of chlorite dismutase: a novel oxygen-generating enzyme. Arch. Microbiol. 1996, 166:321-326.
19. Logan B.E., LaPoint D. Treatment of perchlorate- and nitrate- contaminated groundwater in an autotrophic, gas phase, packed-bed bioreactor. Water Res. 2002, 36.
20. Zhang H., Bruns M.A., Logan B.E. Perchlorate reduction by a novel chemolithoautotrohic, hydrgoen-oxiizing bacterium. Environ. Microbiol. 2002, 4.
21. Brown J.C., Snoeyink V.L., Raskin L., Lin R. The sensitivity of fixed-bed biological perchlorate removal to changes in operating conditions and water quality characteristics. Water Res. 2003, 37:206-214.
22. Min B., Evans P.J., Chiu A.K., Logan B.E. Perchlorate removal in sand and plastic media bioreactors. Water Res. 2004, 38.
23. Son A., Lee J., Chiu P.C., Kim B.J., Cha D.K. Microbial reduction of perchlorate with zero-valent iron. Water Res. 2006, 40:2027-2032.
24. Yu X., Amrheim C., Deshusses M.A., Matsumoto M.R. Perchlorate reduction by autotrophic bacteria in the presence of zero-valent iron. Environ. Sci. Technol. 2006, 40:1328-1334.
25. Yu X., Amrhein C., Deshusses M.A., Matsumoto M.R. Perchlorate reduction by autotrophic bacteria attached to zerovalent iron in a flow-through reactor. Environ. Sci. Technol. 2007, 41:990-997.
26. Vestal J.R., White D.C. Lipid analysis in microbial ecology. BioScience 1989, 39:535-541.
27. Zelles L., Bai Q.Y., Beck T., Beese F. Signature fatty acids in phospholipids and lipopolysaccharides as indicators of microbial biomass and community structure in agricultural soils. J. Biol. Biochem. 1992, 24:317-323.
28. White D.C., Pinkart H.C., Ringelberg D.B. Biomass measurements: biochemical approaches. Manual of Environmental Microbiology 1997, 91-101. American Society for Microbiology, Washington. C.J. Hurst (Ed.).
29. Rajendran N., Matsuda O., Urushigawa Y., Simidu U. Characterization of microbial community structure in the surface sediment of Osaka Bay, Japan, by phospholipid fatty acid analysis. Appl. Environ. Microbiol. 1994, 60:248-257.
30. Bobbie R.J., White D.C. Characterization of benthic microbial community structure by high-resolution gas chromatography of fatty acid methyl esters. Appl. Environ. Microbiol. 1980, 39:1212-1222.
31. Mikell A.T., Phelps T.J., White D.C. Phospholipids to monitor microbial ecology in anaerobic digesters. Methane from Biomass, a Systems Approach 1988, 413-444. Elsevier, New York. W.H. Smith, J.R. Frank (Eds.).
32. Cordova-Kreylos A.L., Cao Y., Green P.G., Hwang H., Kuivila K.M., LaMontagne M.G., Werfhorst L.C., Holden P.A., Scow K.M. Diversity, composition, and geographical distribution of microbial communities in California salt marsh sediments. Appl. Environ. Microbiol. 2006, 72:3357-3366.
33. Shrout J.D., Struckhoff G.C., Parkin G.F., Schnoor J.L. Stimulation and molecular characterization of bacterial perchlorate degradation by plant-produced electron donors. Environ. Sci. Technol. 2006, 40:310-317.
34. Xiao Y., Roberts D.J., Zuo G., Badruzzaman M., Lehman G.S. Characterization of microbial populations in pilot-scale fluidized-bed reactors treating perchlorate- and nitrate- laden brine. Water Res. 2010, 44:4029-4036.
35. Nerenberg R., Kawagoshi Y., Rittmann B.E. Microbial ecology of a perchlorate-reducing, hydrogen-based membrane biofilm reactor. Water Res. 2008, 42:1151-1159.
36. Shrout J.D., Scheetz T.E., Casavant T.L., Parkin G.F. Isolation and characterization of autotrophic, hydrogen-utilizing, perchlorate-reducing bacteria. Appl. Microbial. Biotechnol. 2005, 67:261-268.
37. Sasser M. Identification of bacteria through fatty acid analysis. Methods in Phytobacteriology 1990, 199-204. Akademiai, Budapest. Z. Klement (Ed.).
38. Hotelling H. Analysis of a complex of statistical variables into principal components. J. Educ. Psychol. 1933, 24:328-336.
39. J.R. Perey, Monitoring nitrifying microbial communities in wastewater treatment processes: application of fatty acid analysis, Master thesis, University of Delaware (2000).
40. Borga P., Nilsson M., Tunlid A. Bacterial communities in peat in relation to botanical composistion as revealed by phospholipid fatty acid analysis. Soil Biol. Biochem. 1994, 26:841-848.
41. Haack S.K., Garchow H., Odelson D.A., Forney L.J., Klug M.J. Accuracy, reproducibility, and interpretation of fatty acid methyl ester profiles of model bacterial communities. Appl. Environ. Microbiol. 1994, 60:2483-2493.
42. Princic A., Mahne I., Megusar F., Paul E.A., Tiedje J.M. Effects of pH and oxygen and ammonium concentrations on the commmunity structure of nitrifying bacteria from wastewater. Appl. Environ. Microbiol. 1998, 64:3584-3590.
43. Kato K., Miura N. Effect of matured compost as a bulking and inoculating agent on the microbial community and maturity of cattle manure compost. Bioresource Technol. 2008, 99:3372-3380.
44. Wilson K. Preparation of genomic DNA from bacteria. Current Protocols in Molecular Biology 1994, John Wiley & Sons, Inc., Brooklyn, NY. F.M. Ausubel (Ed.).
45. Bender K.S., Rice M.R., Fugate W.H., Coates J.D., Achenbach L.A. Metabolic primers for detection of perchlorate-reducing bacteria in the environment and phylogenetic analysis of cld gene sequences. Appl. Environ. Microbiol. 2004, 70:5651-5658.
46. McPherson M.J., Moller S.G. PCR 2000, Springer Press.
47. Tatusova T.A., Madden T.L. Blast 2 sequences-a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 1999, 174:247-250.
48. Torgerson W.S. Multidimensional scaling I: theory and method. Psycometrika 1952, 17:401-419.
49. Gower J.C. Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika 1966, 53:325-328.
50. Cox T.F., Cox M.A.A. Multidimenstional Scaling 2000, Chapman & Hall, London. 2nd ed.
51. Kruskal J.B. Non-metric multidimensional scaling: a numerical method. Psykometrika 1964, 29:115-129.
52. Mardia K.V., Kent J.T., Bibby J.M. Multivariate analysis 1979, Academic Press.
53. Salles J.F., De Souza F.A., van Elsas J.D. Molecular method to assess the diversity of Burkhoderia species in environmental samples. Appl. Environ. Microbiol. 2002, 68:1595-1603.
54. Nozawa-Inoue M., Scow K.M., Rolston D.E. Reduction of perchlorate and nitrate by microbial communities in vadose soil. Appl. Environ. Microbiol. 2005, 71:3928-3934.
55. Karr E.A., Sattley W.M., Jung D.O., Madigan M.T., Achenbach L.A. Remarkable diversity of phototrophic purple bacteria in a permanently frozen Antartic lake. Appl. Environ. Microbiol. 2003, 69:4910-4914.