Complete nucleotide sequence and determination of the replication region of the sporulation inhibiting plasmid p576 from Bacillus pumilus NRS576

Research in Microbiology

Volumn 161, Issue 9, 2010, Pages 772-782

  Singh, Praveen K ^a   Ballestero Beltrán, Sandra ^a   Ramachandran, Gayetri ^a   Meijer, Wilfried J J ^a  

^a UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

Author keywords

Bacillus pumilus; Conjugation; DNA replication; Plasmid; Sporulation

Indexed keywords

ARTICLE; BACILLUS PUMILUS; BACTERIAL GENETICS; BACTERIAL STRAIN; DNA REPLICATION; DNA SEQUENCE; GENE IDENTIFICATION; GENETIC ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PLASMID P576; PRIORITY JOURNAL; SPOROGENESIS;

AMINO ACID SEQUENCE; BACILLUS; BACTERIAL PROTEINS; BASE SEQUENCE; DNA REPLICATION; MOLECULAR SEQUENCE DATA; PLASMIDS;

BACILLUS PUMILUS; BACILLUS SUBTILIS; POSIBACTERIA;

EID: 78649865586     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2010.07.007     Document Type: Article

References (31)

1. Alvarez-Martinez C.E., Christie P.J. Biological diversity of prokaryotic type IV secretion systems. Microbiol. Mol. Biol. Rev. 2009, 73:775-808.
2. Bongiorni C., Stoessel R., Shoemaker D., Perego M. Rap phosphatases of virulence plasmid pXO1 inhibits Bacillus anthracis sporulation. J. Bacteriol. 2006, 188:487-498.
3. Bork P., Sander C., Valencia A. An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins. Proc. Natl. Acad. Sci. USA 1992, 89:7290-7294.
4. Brewer B.J. When polymerases collide: replication and the transcriptional organization of the E. coli chromosome. Cell 1988, 53:679-686.
5. Bullock W.O., Fernandez J.M., Short J.M. XL1-blue: a high efficiency plasmid transforming recA Escherichia coli strain with Beta-galactosidase selection. Biotechniques 1987, 5:376-379.
6. Clewell D.B., Francia M.V. Conjugation in gram-positive bacteria. Plasmid Biology 2004, 227-256. ASM Press, Washington DC. B.E. Funnell, G.J. Philips (Eds.).
7. Derman A.I., Becker E.C., Truong B.D., Fujioka A., Tucey T.M., Erb M.L., Patterson P.C., Pogliano J. Phylogenetic analysis identifies many uncharacterized actin-like proteins (Alps) in bacteria: regulated polymerization, dynamic instability and treadmilling in Alp7A. Mol. Microbiol. 2009, 73:534-552.
8. Ebersbach G., Gerdes K. Plasmid segregation mechanisms. Annu. Rev. Genet. 2005, 39:453-479.
9. Frost L.S., Leplae R., Summers A.O., Toussaint A. Mobile genetic elements: the agents of open source evolution. Nat. Rev. Micobiol. 2005, 3:722-732.
10. Gerdes K., Christensen S.K., Løbner-Olesen A. Prokaryotic toxin-antitoxin stress response loci. Nat. Rev. Micobiol. 2005, 3:371-382.
11. Gogarten J.P., Townsend J.P. Horizontal gene transfer, genome innovation and evolution. Nat. Rev. Micobiol. 2005, 3:679-687.
12. Grindley N.D., Whiteson K.L., Rice P.A. Mechanisms of site-specific recombination. Annu. Rev. Biochem. 2006, 75:567-605.
13. Grohmann E., Muth G., Espinosa M. Conjugative plasmid transfer in gram-positive bacteria. Microbiol. Mol. Biol. Rev. 2003, 67:277-301.
14. Hyatt D., Chen G.L., LoCascio P.F., Land M.L., Larimer F.W., Hauser L.J. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinform. 2010, 11:130.
15. Lioy V.S., Pratto F., de la Hoz A.B., Ayora S., Alonso J.C. Plasmid pSM19035, a model to study stable maintenance in firmicutes. Plasmid 2010, 64:1-17.
16. Lovett P.S. Plasmid in Bacillus pumilus and the enhanced sporulation of plasmid-negative variants. J. Bacteriol. 1973, 115:291-298.
17. Lovett P.S., Bramucci M.G. Biochemical studies of two Bacillus pumilus plasmids. J. Bacteriol. 1974, 120:488-494.
18. Meijer W.J.J. Replication and maintenance of plasmids in Bacillus subtilis 1995.
19. Meijer W.J.J., de Boer A., van Tongeren S., Venema G., Bron S. Characterization of the replication region of the Bacillus subtilis plasmid pLS20: a novel type of replicon. Nucleic Acids Res. 1995, 23:3214-3223.
20. Meijer W.J.J., Smith M., Wake R.G., de Boer A.L., Venema G., Bron S. Identification and characterization of a novel type of replication terminator with bidirectional activity on the Bacillus subtilis theta plasmid pLS20. Mol. Microbiol. 1996, 19:1295-1306.
21. Meijer W.J.J., Wisman G.B.A., Terpstra P., Thorsted P.B., Thomas C.M., Holsappel S., Venema G., Bron S. Rolling-circle plasmids from Bacillus subtilis: complete nucleotide sequences and analyses of genes of pTA1015, pTA1040, pTA1050 and pTA1060, and comparisons with related plasmids from Gram-positive bacteria. FEMS Microbiol. Rev. 1998, 21:337-368.
22. Mohanty B.K., Bussiere D.E., Sahoo T., Pai K.S., Meijer W.J.J., Bron S., Bastia D. Structural and functional analysis of a bipolar replication terminus: implications for the origin of polarity of fork arrest. J. Biol. Chem. 2001, 276:13160-13168.
23. Møller-Jensen J., Jensen R.B., Gerdes K. Plasmid and chromosome segregation in prokaryotes. Trends Microbiol. 2000, 8:313-320.
24. Perego M., Hanstein C., Welsh K.M., Djavakhishvili T., Glaser P., Hoch J.A. Multiple protein aspartate phosphatases provide a mechanism for the integration of diverse signals in the control of development in Bacillus subtilis. Cell 1994, 79:1047-1055.
25. Perego M., Hoch J.A. Two-component systems, phophorelays, and regulation of their activities by phosphatases. Bacillus subtilis and Its Closest Relatives: From Genes to Cells 2002, 473-481. American Society for Microbiology Press, Washington, DC. A.L. Sonenshein, J.A. Hoch, R. Losick (Eds.).
26. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning: a Laboratory Manual 1989, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
27. Smits W.K., Bongiorni C., Veening J.W., Hamoen L.W., Kuipers O.P., Perego M. Temporal separation of distinct differentiation pathways by a dual specificity Rap-Phr system in Bacillus subtilis. Mol. Microbiol. 2007, 65:103-120.
28. Thanbichler M., Shapiro L. Getting organized. How bacterial cells move proteins and DNA. Nat. Rev. Micobiol. 2008, 6:28-40.
29. Titok M.A., Chapuis J., Selezneva Y.V., Lagodich A.V., Prokulevich V.A., Ehrlich S.D., Jannière L. Bacillus subtilis soil isolates: plasmid replicon analysis and construction of a new theta-replicating vector. Plasmid 2003, 49:53-62.
30. Weaver K.E., Kwong S.M., Firth N., Francia M.V. The RepA_N replicons of Gram-positive bacteria: a family of broadly distributed but narrow host range plasmids. Plasmid 2009, 61:94-109.
31. Zavilgelsky G.B., Rastorguev S.M. Antirestriction proteins ArdA and Ocr as efficient inhibitors of type I restriction-modification enzymes. Mol. Biol. 2009, 43:241-248.