-
2
-
-
35148838537
-
Drug-target network
-
Yildirim MA, Goh KI, Cusick ME, Barabasi AL, Vidal M (2007) Drug-target network. Nat Biotechnol 25: 1119-1126.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 1119-1126
-
-
Yildirim, M.A.1
Goh, K.I.2
Cusick, M.E.3
Barabasi, A.L.4
Vidal, M.5
-
3
-
-
33746156959
-
Global mapping of pharmacological space
-
Paolini GV, Shapland RH, van Hoorn WP, Mason JS, Hopkins AL (2006) Global mapping of pharmacological space. Nat Biotechnol 24: 805-815.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 805-815
-
-
Paolini, G.V.1
Shapland, R.H.2
van Hoorn, W.P.3
Mason, J.S.4
Hopkins, A.L.5
-
4
-
-
33846876695
-
Relating protein pharmacology by ligand chemistry
-
Keiser MJ, Roth BL, Armbruster BN, Ernsberger P, Irwin JJ, et al. (2007) Relating protein pharmacology by ligand chemistry. Nat Biotechnol 25: 197-206.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 197-206
-
-
Keiser, M.J.1
Roth, B.L.2
Armbruster, B.N.3
Ernsberger, P.4
Irwin, J.J.5
-
5
-
-
70449634957
-
Predicting new molecular targets for known drugs
-
Keiser MJ, Setola V, Irwin JJ, Laggner C, Abbas AI, et al. (2009) Predicting new molecular targets for known drugs. Nature 462: 175-181.
-
(2009)
Nature
, vol.462
, pp. 175-181
-
-
Keiser, M.J.1
Setola, V.2
Irwin, J.J.3
Laggner, C.4
Abbas, A.I.5
-
6
-
-
4043121114
-
Computational chemogenomics approaches to systematic knowledge-based drug discovery
-
Mestres J (2004) Computational chemogenomics approaches to systematic knowledge-based drug discovery. Curr Opin Drug Discov Devel 7: 304-313.
-
(2004)
Curr Opin Drug Discov Devel
, vol.7
, pp. 304-313
-
-
Mestres, J.1
-
7
-
-
47249146126
-
Drug target identification using side-effect similarity
-
Campillos M, Kuhn M, Gavin AC, Jensen LJ, Bork P (2008) Drug target identification using side-effect similarity. Science 321: 263-266.
-
(2008)
Science
, vol.321
, pp. 263-266
-
-
Campillos, M.1
Kuhn, M.2
Gavin, A.C.3
Jensen, L.J.4
Bork, P.5
-
8
-
-
33845876254
-
The Connectivity Map: A new tool for biomedical research
-
Lamb J (2007) The Connectivity Map: a new tool for biomedical research. Nat Rev Cancer 7: 54-60.
-
(2007)
Nat Rev Cancer
, vol.7
, pp. 54-60
-
-
Lamb, J.1
-
9
-
-
33749335282
-
The Connectivity Map: Using gene-expression signatures to connect small molecules, genes, and disease
-
Lamb J, Crawford ED, Peck D, Modell JW, Blat IC, et al. (2006) The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. Science 313: 1929-1935.
-
(2006)
Science
, vol.313
, pp. 1929-1935
-
-
Lamb, J.1
Crawford, E.D.2
Peck, D.3
Modell, J.W.4
Blat, I.C.5
-
10
-
-
46249090791
-
Prediction of drug-target interaction networks from the integration of chemical and genomic spaces
-
Yamanishi Y, Araki M, Gutteridge A, Honda W, Kanehisa M (2008) Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. Bioinformatics 24: i232-240.
-
(2008)
Bioinformatics
, vol.24
-
-
Yamanishi, Y.1
Araki, M.2
Gutteridge, A.3
Honda, W.4
Kanehisa, M.5
-
11
-
-
67650895854
-
Integrating statistical predictions and experimental verifications for enhancing protein-chemical interaction predictions in virtual screening
-
Nagamine N, Shirakawa T, Minato Y, Torii K, Kobayashi H, et al. (2009) Integrating statistical predictions and experimental verifications for enhancing protein-chemical interaction predictions in virtual screening. PLoS Comput Biol 5: e1000397.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Nagamine, N.1
Shirakawa, T.2
Minato, Y.3
Torii, K.4
Kobayashi, H.5
-
12
-
-
67249095008
-
Alignment-free prediction of a drug-target complex network based on parameters of drug connectivity and protein sequence of receptors
-
Vina D, Uriarte E, Orallo F, Gonzalez-Diaz H (2009) Alignment-free prediction of a drug-target complex network based on parameters of drug connectivity and protein sequence of receptors. Mol Pharm 6: 825-835.
-
(2009)
Mol Pharm
, vol.6
, pp. 825-835
-
-
Vina, D.1
Uriarte, E.2
Orallo, F.3
Gonzalez-Diaz, H.4
-
13
-
-
38549151817
-
DrugBank: A knowledgebase for drugs, drug actions and drug targets
-
Wishart DS, Knox C, Guo AC, Cheng D, Shrivastava S, et al. (2008) DrugBank: a knowledgebase for drugs, drug actions and drug targets. Nucleic Acids Res 36: D901-906.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Cheng, D.4
Shrivastava, S.5
-
14
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Res 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
-
15
-
-
68249144628
-
Drug discovery using chemical systems biology: Repositioning the safe medicine Comtan to treat multi-drug and extensively drug resistant tuberculosis
-
Kinnings SL, Liu N, Buchmeier N, Tonge PJ, Xie L, et al. (2009) Drug discovery using chemical systems biology: repositioning the safe medicine Comtan to treat multi-drug and extensively drug resistant tuberculosis. PLoS Comput Biol 5:e1000423.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Kinnings, S.L.1
Liu, N.2
Buchmeier, N.3
Tonge, P.J.4
Xie, L.5
-
16
-
-
67049100457
-
Drug discovery using chemical systems biology: Identification of the protein-ligand binding network to explain the side effects of CETP inhibitors
-
Xie L, Li J, Bourne PE (2009) Drug discovery using chemical systems biology: identification of the protein-ligand binding network to explain the side effects of CETP inhibitors. PLoS Comput Biol 5: e1000387.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Xie, L.1
Li, J.2
Bourne, P.E.3
-
17
-
-
36949009488
-
In silico elucidation of the molecular mechanism defining the adverse effect of selective estrogen receptor modulators
-
Xie L, Wang J, Bourne PE (2007) In silico elucidation of the molecular mechanism defining the adverse effect of selective estrogen receptor modulators. PLoS Comput Biol 3: e217.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Xie, L.1
Wang, J.2
Bourne, P.E.3
-
18
-
-
76749142540
-
A multidimensional strategy to detect polypharmacological targets in the absence of structural and sequence homology
-
Durrant JD, Amaro RE, Xie L, Urbaniak MD, Ferguson MA, et al. (2010) A multidimensional strategy to detect polypharmacological targets in the absence of structural and sequence homology. PLoS Comput Biol 6: e1000648.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Durrant, J.D.1
Amaro, R.E.2
Xie, L.3
Urbaniak, M.D.4
Ferguson, M.A.5
-
19
-
-
0035986718
-
The TB structural genomics consortium: Providing a structural foundation for drug discovery
-
Goulding CW, Apostol M, Anderson DH, Gill HS, Smith CV, et al. (2002) The TB structural genomics consortium: providing a structural foundation for drug discovery. Curr Drug Targets Infect Disord 2: 121-141.
-
(2002)
Curr Drug Targets Infect Disord
, vol.2
, pp. 121-141
-
-
Goulding, C.W.1
Apostol, M.2
Anderson, D.H.3
Gill, H.S.4
Smith, C.V.5
-
20
-
-
33744459472
-
Toward the structural genomics of complexes: Crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis
-
Strong M, Sawaya MR, Wang S, Phillips M, Cascio D, et al. (2006) Toward the structural genomics of complexes: crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis. Proc Natl Acad Sci U S A 103: 8060-8065.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 8060-8065
-
-
Strong, M.1
Sawaya, M.R.2
Wang, S.3
Phillips, M.4
Cascio, D.5
-
21
-
-
10744233879
-
The TB structural genomics consortium: A resource for Mycobacterium tuberculosis biology
-
Terwilliger TC, Park MS, Waldo GS, Berendzen J, Hung LW, et al. (2003) The TB structural genomics consortium: a resource for Mycobacterium tuberculosis biology. Tuberculosis (Edinb) 83: 223-249.
-
(2003)
Tuberculosis (Edinb)
, vol.83
, pp. 223-249
-
-
Terwilliger, T.C.1
Park, M.S.2
Waldo, G.S.3
Berendzen, J.4
Hung, L.W.5
-
22
-
-
66349119013
-
A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery
-
Xie L, Bourne PE (2009) A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery. Bioinformatics 25: i305-312.
-
(2009)
Bioinformatics
, vol.25
-
-
Xie, L.1
Bourne, P.E.2
-
23
-
-
34447645811
-
A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites
-
Xie L, Bourne PE (2007) A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites. BMC Bioinformatics 8 Suppl 4: S9.
-
(2007)
BMC Bioinformatics
, vol.4
, Issue.8 SUPPL.
-
-
Xie, L.1
Bourne, P.E.2
-
24
-
-
44449139387
-
Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments
-
Xie L, Bourne PE (2008) Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments. Proc Natl Acad Sci U S A 105: 5441-5446.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 5441-5446
-
-
Xie, L.1
Bourne, P.E.2
-
25
-
-
60549115249
-
A class of selective antibacterials derived from a protein kinase inhibitor pharmacophore
-
Miller JR, Dunham S, Mochalkin I, Banotai C, Bowman M, et al. (2009) A class of selective antibacterials derived from a protein kinase inhibitor pharmacophore. Proc Natl Acad Sci U S A 106: 1737-1742.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 1737-1742
-
-
Miller, J.R.1
Dunham, S.2
Mochalkin, I.3
Banotai, C.4
Bowman, M.5
-
26
-
-
33846155913
-
Structurebased maximal affinity model predicts small-molecule druggability
-
Cheng AC, Coleman RG, Smyth KT, Cao Q, Soulard P, et al. (2007) Structurebased maximal affinity model predicts small-molecule druggability. Nat Biotechnol 25: 71-75.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 71-75
-
-
Cheng, A.C.1
Coleman, R.G.2
Smyth, K.T.3
Cao, Q.4
Soulard, P.5
-
27
-
-
34548861262
-
GSMN-TB: A web-based genome-scale network model of Mycobacterium tuberculosis metabolism
-
Beste DJ, Hooper T, Stewart G, Bonde B, Avignone-Rossa C, et al. (2007) GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosis metabolism. Genome Biol 8: R89.
-
(2007)
Genome Biol
, vol.8
-
-
Beste, D.J.1
Hooper, T.2
Stewart, G.3
Bonde, B.4
Avignone-Rossa, C.5
-
28
-
-
34447317247
-
Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets
-
Jamshidi N, Palsson BO (2007) Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets. BMC Syst Biol 1: 26.
-
(2007)
BMC Syst Biol
, vol.1
, pp. 26
-
-
Jamshidi, N.1
Palsson, B.O.2
-
29
-
-
33748477712
-
Crystallization and preliminary X-ray crystallographic studies of Mycobacterium tuberculosis CRP/FNR family transcription regulator
-
Akif M, Akhter Y, Hasnain SE, Mande SC (2006) Crystallization and preliminary X-ray crystallographic studies of Mycobacterium tuberculosis CRP/FNR family transcription regulator. Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 873-875.
-
(2006)
Acta Crystallogr Sect F Struct Biol Cryst Commun
, vol.62
, pp. 873-875
-
-
Akif, M.1
Akhter, Y.2
Hasnain, S.E.3
Mande, S.C.4
-
30
-
-
0028156861
-
InhA, a gene encoding a target for isoniazid and ethionamide in Mycobacterium tuberculosis
-
Banerjee A, Dubnau E, Quemard A, Balasubramanian V, Um KS, et al. (1994) inhA, a gene encoding a target for isoniazid and ethionamide in Mycobacterium tuberculosis. Science 263: 227-230.
-
(1994)
Science
, vol.263
, pp. 227-230
-
-
Banerjee, A.1
Dubnau, E.2
Quemard, A.3
Balasubramanian, V.4
Um, K.S.5
-
31
-
-
38949097460
-
Inhibitors of FabI, an enzyme drug target in the bacterial fatty acid biosynthesis pathway
-
Lu H, Tonge PJ (2008) Inhibitors of FabI, an enzyme drug target in the bacterial fatty acid biosynthesis pathway. Acc Chem Res 41: 11-20.
-
(2008)
Acc Chem Res
, vol.41
, pp. 11-20
-
-
Lu, H.1
Tonge, P.J.2
-
32
-
-
0037013276
-
Adenylyl cyclase Rv1264 from Mycobacterium tuberculosis has an autoinhibitory N-terminal domain
-
Linder JU, Schultz A, Schultz JE (2002) Adenylyl cyclase Rv1264 from Mycobacterium tuberculosis has an autoinhibitory N-terminal domain. J Biol Chem 277: 15271-15276.
-
(2002)
J Biol Chem
, vol.277
, pp. 15271-15276
-
-
Linder, J.U.1
Schultz, A.2
Schultz, J.E.3
-
33
-
-
33746046362
-
Higher-order organization and regulation of adenylyl cyclases
-
Cooper DM, Crossthwaite AJ (2006) Higher-order organization and regulation of adenylyl cyclases. Trends Pharmacol Sci 27: 426-431.
-
(2006)
Trends Pharmacol Sci
, vol.27
, pp. 426-431
-
-
Cooper, D.M.1
Crossthwaite, A.J.2
-
34
-
-
0036270739
-
Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profiling
-
Betts JC, Lukey PT, Robb LC, McAdam RA, Duncan K (2002) Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profiling. Mol Microbiol 43: 717-731.
-
(2002)
Mol Microbiol
, vol.43
, pp. 717-731
-
-
Betts, J.C.1
Lukey, P.T.2
Robb, L.C.3
McAdam, R.A.4
Duncan, K.5
-
35
-
-
57349131909
-
1.9 A structure of the signal receiver domain of the putative response regulator NarL from Mycobacterium tuberculosis
-
Schnell R, Agren D, Schneider G (2008) 1.9 A structure of the signal receiver domain of the putative response regulator NarL from Mycobacterium tuberculosis. Acta Crystallogr Sect F Struct Biol Cryst Commun 64: 1096-1100.
-
(2008)
Acta Crystallogr Sect F Struct Biol Cryst Commun
, vol.64
, pp. 1096-1100
-
-
Schnell, R.1
Agren, D.2
Schneider, G.3
-
36
-
-
0037371176
-
Deletion of two-component regulatory systems increases the virulence of Mycobacterium tuberculosis
-
Parish T, Smith DA, Kendall S, Casali N, Bancroft GJ, et al. (2003) Deletion of two-component regulatory systems increases the virulence of Mycobacterium tuberculosis. Infect Immun 71: 1134-1140.
-
(2003)
Infect Immun
, vol.71
, pp. 1134-1140
-
-
Parish, T.1
Smith, D.A.2
Kendall, S.3
Casali, N.4
Bancroft, G.J.5
-
37
-
-
4043072746
-
Mycobacterium tuberculosis LprG (Rv1411c): A novel TLR-2 ligand that inhibits human macrophage class II MHC antigen processing
-
Gehring AJ, Dobos KM, Belisle JT, Harding CV, Boom WH (2004) Mycobacterium tuberculosis LprG (Rv1411c): a novel TLR-2 ligand that inhibits human macrophage class II MHC antigen processing. J Immunol 173:2660-2668.
-
(2004)
J Immunol
, vol.173
, pp. 2660-2668
-
-
Gehring, A.J.1
Dobos, K.M.2
Belisle, J.T.3
Harding, C.V.4
Boom, W.H.5
-
38
-
-
60649100656
-
Aligning antimicrobial drug discovery with complex and redundant host-pathogen interactions
-
Lebeis SL, Kalman D (2009) Aligning antimicrobial drug discovery with complex and redundant host-pathogen interactions. Cell Host Microbe 5:114-122.
-
(2009)
Cell Host Microbe
, vol.5
, pp. 114-122
-
-
Lebeis, S.L.1
Kalman, D.2
-
39
-
-
50149111428
-
Targeting QseC signaling and virulence for antibiotic development
-
Rasko DA, Moreira CG, Li de R, Reading NC, Ritchie JM, et al. (2008) Targeting QseC signaling and virulence for antibiotic development. Science 321:1078-1080.
-
(2008)
Science
, vol.321
, pp. 1078-1080
-
-
Rasko, D.A.1
Moreira, C.G.2
de Li, R.3
Reading, N.C.4
Ritchie, J.M.5
-
40
-
-
70149120111
-
Targeting a bacterial stress response to enhance antibiotic action
-
Lee S, Hinz A, Bauerle E, Angermeyer A, Juhaszova K, et al. (2009) Targeting a bacterial stress response to enhance antibiotic action. Proc Natl Acad Sci U S A 106: 14570-14575.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 14570-14575
-
-
Lee, S.1
Hinz, A.2
Bauerle, E.3
Angermeyer, A.4
Juhaszova, K.5
-
41
-
-
33644499476
-
Practical applications and feasibility of efflux pump inhibitors in the clinic-a vision for applied use
-
Lomovskaya O, Bostian KA (2006) Practical applications and feasibility of efflux pump inhibitors in the clinic-a vision for applied use. Biochem Pharmacol 71:910-918.
-
(2006)
Biochem Pharmacol
, vol.71
, pp. 910-918
-
-
Lomovskaya, O.1
Bostian, K.A.2
-
42
-
-
35148824614
-
Network pharmacology
-
Hopkins AL (2007) Network pharmacology. Nat Biotechnol 25: 1110-1111.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 1110-1111
-
-
Hopkins, A.L.1
-
43
-
-
54249155522
-
Network pharmacology: The next paradigm in drug discovery
-
Hopkins AL (2008) Network pharmacology: the next paradigm in drug discovery. Nat Chem Biol 4: 682-690.
-
(2008)
Nat Chem Biol
, vol.4
, pp. 682-690
-
-
Hopkins, A.L.1
-
45
-
-
25144505772
-
Structural basis of the drug-binding specificity of human serum albumin
-
Ghuman J, Zunszain PA, Petitpas I, Bhattacharya AA, Otagiri M, et al. (2005) Structural basis of the drug-binding specificity of human serum albumin. J Mol Biol 353: 38-52.
-
(2005)
J Mol Biol
, vol.353
, pp. 38-52
-
-
Ghuman, J.1
Zunszain, P.A.2
Petitpas, I.3
Bhattacharya, A.A.4
Otagiri, M.5
-
46
-
-
42449159361
-
Rifamycin antibiotic resistance by ADP-ribosylation: Structure and diversity of Arr
-
Baysarowich J, Koteva K, Hughes DW, Ejim L, Griffiths E, et al. (2008) Rifamycin antibiotic resistance by ADP-ribosylation: Structure and diversity of Arr. Proc Natl Acad Sci U S A 105: 4886-4891.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4886-4891
-
-
Baysarowich, J.1
Koteva, K.2
Hughes, D.W.3
Ejim, L.4
Griffiths, E.5
-
47
-
-
55349104084
-
Genomic-scale prioritization of drug targets: The TDR Targets database
-
Aguero F, Al-Lazikani B, Aslett M, Berriman M, Buckner FS, et al. (2008) Genomic-scale prioritization of drug targets: the TDR Targets database. Nat Rev Drug Discov 7: 900-907.
-
(2008)
Nat Rev Drug Discov
, vol.7
, pp. 900-907
-
-
Aguero, F.1
Al-Lazikani, B.2
Aslett, M.3
Berriman, M.4
Buckner, F.S.5
-
48
-
-
33847705622
-
Mycobacterial shikimate pathway enzymes as targets for drug design
-
Ducati RG, Basso LA, Santos DS (2007) Mycobacterial shikimate pathway enzymes as targets for drug design. Curr Drug Targets 8: 423-435.
-
(2007)
Curr Drug Targets
, vol.8
, pp. 423-435
-
-
Ducati, R.G.1
Basso, L.A.2
Santos, D.S.3
-
49
-
-
33645737729
-
LppX is a lipoprotein required for the translocation of phthiocerol dimycocerosates to the surface of Mycobacterium tuberculosis
-
Sulzenbacher G, Canaan S, Bordat Y, Neyrolles O, Stadthagen G, et al. (2006) LppX is a lipoprotein required for the translocation of phthiocerol dimycocerosates to the surface of Mycobacterium tuberculosis. EMBO J 25: 1436-1444.
-
(2006)
EMBO J
, vol.25
, pp. 1436-1444
-
-
Sulzenbacher, G.1
Canaan, S.2
Bordat, Y.3
Neyrolles, O.4
Stadthagen, G.5
-
50
-
-
33947506850
-
Structural and biophysical studies on two promoter recognition domains of the extra-cytoplasmic function sigma factor sigma(C) from Mycobacterium tuberculosis
-
Thakur KG, Joshi AM, Gopal B (2007) Structural and biophysical studies on two promoter recognition domains of the extra-cytoplasmic function sigma factor sigma(C) from Mycobacterium tuberculosis. J Biol Chem 282: 4711-4718.
-
(2007)
J Biol Chem
, vol.282
, pp. 4711-4718
-
-
Thakur, K.G.1
Joshi, A.M.2
Gopal, B.3
-
51
-
-
67249131526
-
Mycobacterium tuberculosis universal stress protein Rv2623 regulates bacillary growth by ATPBinding: Requirement for establishing chronic persistent infection
-
Drumm JE, Mi K, Bilder P, Sun M, Lim J, et al. (2009) Mycobacterium tuberculosis universal stress protein Rv2623 regulates bacillary growth by ATPBinding: requirement for establishing chronic persistent infection. PLoS Pathog 5: e1000460.
-
(2009)
PLoS Pathog
, vol.5
-
-
Drumm, J.E.1
Mi, K.2
Bilder, P.3
Sun, M.4
Lim, J.5
-
52
-
-
2942718724
-
Protein kinase G from pathogenic mycobacteria promotes survival within macrophages
-
Walburger A, Koul A, Ferrari G, Nguyen L, Prescianotto-Baschong C, et al. (2004) Protein kinase G from pathogenic mycobacteria promotes survival within macrophages. Science 304: 1800-1804.
-
(2004)
Science
, vol.304
, pp. 1800-1804
-
-
Walburger, A.1
Koul, A.2
Ferrari, G.3
Nguyen, L.4
Prescianotto-Baschong, C.5
-
53
-
-
67749093304
-
Protein kinase G is required for intrinsic antibiotic resistance in mycobacteria
-
Wolff KA, Nguyen HT, Cartabuke RH, Singh A, Ogwang S, et al. (2009) Protein kinase G is required for intrinsic antibiotic resistance in mycobacteria. Antimicrob Agents Chemother 53: 3515-3519.
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 3515-3519
-
-
Wolff, K.A.1
Nguyen, H.T.2
Cartabuke, R.H.3
Singh, A.4
Ogwang, S.5
-
54
-
-
78649659554
-
-
WHO, Tuberculosis Fact Sheet No.104
-
WHO (2006) Tuberculosis Fact Sheet No.104.
-
(2006)
-
-
-
55
-
-
77952704258
-
Thousands of chemical starting points for antimalarial lead identification
-
Gamo FJ, Sanz LM, Vidal J, de Cozar C, Alvarez E, et al. (2010) Thousands of chemical starting points for antimalarial lead identification. Nature 465: 305-310.
-
(2010)
Nature
, vol.465
, pp. 305-310
-
-
Gamo, F.J.1
Sanz, L.M.2
Vidal, J.3
de Cozar, C.4
Alvarez, E.5
-
56
-
-
77952718950
-
Chemical genetics of Plasmodium falciparum
-
Guiguemde WA, Shelat AA, Bouck D, Duffy S, Crowther GJ, et al. (2010) Chemical genetics of Plasmodium falciparum. Nature 465: 311-315.
-
(2010)
Nature
, vol.465
, pp. 311-315
-
-
Guiguemde, W.A.1
Shelat, A.A.2
Bouck, D.3
Duffy, S.4
Crowther, G.J.5
-
58
-
-
68949119585
-
The topology of drug-target interaction networks: Implicit dependence on drug properties and target families
-
Mestres J, Gregori-Puigjane E, Valverde S, Sole RV (2009) The topology of drug-target interaction networks: implicit dependence on drug properties and target families. Mol Biosyst 5: 1051-1057.
-
(2009)
Mol Biosyst
, vol.5
, pp. 1051-1057
-
-
Mestres, J.1
Gregori-Puigjane, E.2
Valverde, S.3
Sole, R.V.4
-
59
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440: 637-643.
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
-
60
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong H, Tombor B, Albert R, Oltvai ZN, Barabasi AL (2000) The large-scale organization of metabolic networks. Nature 407: 651-654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
61
-
-
0035823264
-
The small world inside large metabolic networks
-
Wagner A, Fell DA (2001) The small world inside large metabolic networks. Proc Biol Sci 268: 1803-1810.
-
(2001)
Proc Biol Sci
, vol.268
, pp. 1803-1810
-
-
Wagner, A.1
Fell, D.A.2
-
62
-
-
35148837586
-
Distribution patterns of small-molecule ligands in the protein universe and implications for origin of life and drug discovery
-
Ji HF, Kong DX, Shen L, Chen LL, Ma BG, et al. (2007) Distribution patterns of small-molecule ligands in the protein universe and implications for origin of life and drug discovery. Genome Biol 8: R176.
-
(2007)
Genome Biol
, vol.8
-
-
Ji, H.F.1
Kong, D.X.2
Shen, L.3
Chen, L.L.4
Ma, B.G.5
-
63
-
-
0037325259
-
Measuring preferential attachment in evolving networks
-
Jeong H, Neda Z, Barabasi AL (2003) Measuring preferential attachment in evolving networks. Europhys Lett 61: 567-572.
-
(2003)
Europhys Lett
, vol.61
, pp. 567-572
-
-
Jeong, H.1
Neda, Z.2
Barabasi, A.L.3
-
64
-
-
0035420724
-
Clustering and preferential attachment in growing networks
-
Newman ME (2001) Clustering and preferential attachment in growing networks. Phys Rev E Stat Nonlin Soft Matter Phys 64: 025102.
-
(2001)
Phys Rev E Stat Nonlin Soft Matter Phys
, vol.64
, pp. 025102
-
-
Newman, M.E.1
-
65
-
-
0642285840
-
Preferential attachment in the protein network evolution
-
Eisenberg E, Levanon EY (2003) Preferential attachment in the protein network evolution. Phys Rev Lett 91: 138701.
-
(2003)
Phys Rev Lett
, vol.91
, pp. 138701
-
-
Eisenberg, E.1
Levanon, E.Y.2
-
66
-
-
66549127972
-
Nothing about protein structure classification makes sense except in the light of evolution
-
Valas RE, Yang S, Bourne PE (2009) Nothing about protein structure classification makes sense except in the light of evolution. Curr Opin Struct Biol 19: 329-334.
-
(2009)
Curr Opin Struct Biol
, vol.19
, pp. 329-334
-
-
Valas, R.E.1
Yang, S.2
Bourne, P.E.3
-
68
-
-
67650912101
-
FINDSITE: A threading-based approach to ligand homology modeling
-
Brylinski M, Skolnick J (2009) FINDSITE: a threading-based approach to ligand homology modeling. PLoS Comput Biol 5: e1000405.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Brylinski, M.1
Skolnick, J.2
-
69
-
-
31344462177
-
Conformational diversity of ligands bound to proteins
-
Stockwell GR, Thornton JM (2006) Conformational diversity of ligands bound to proteins. J Mol Biol 356: 928-944.
-
(2006)
J Mol Biol
, vol.356
, pp. 928-944
-
-
Stockwell, G.R.1
Thornton, J.M.2
-
71
-
-
4344645978
-
Can the pharmaceutical industry reduce attrition rates?
-
Kola I, Landis J (2004) Can the pharmaceutical industry reduce attrition rates? Nat Rev Drug Discov 3: 711-715.
-
(2004)
Nat Rev Drug Discov
, vol.3
, pp. 711-715
-
-
Kola, I.1
Landis, J.2
-
72
-
-
77649234756
-
How to improve R&D productivity: The pharmaceutical industry's grand challenge
-
Paul SM, Mytelka DS, Dunwiddie CT, Persinger CC, Munos BH, et al. (2010) How to improve R&D productivity: the pharmaceutical industry's grand challenge. Nat Rev Drug Discov 9: 203-214.
-
(2010)
Nat Rev Drug Discov
, vol.9
, pp. 203-214
-
-
Paul, S.M.1
Mytelka, D.S.2
Dunwiddie, C.T.3
Persinger, C.C.4
Munos, B.H.5
-
73
-
-
59849106371
-
Protein promiscuity and its implications for biotechnology
-
Nobeli I, Favia AD, Thornton JM (2009) Protein promiscuity and its implications for biotechnology. Nat Biotechnol 27: 157-167.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 157-167
-
-
Nobeli, I.1
Favia, A.D.2
Thornton, J.M.3
-
75
-
-
0037374498
-
The price of innovation: New estimates of drug development costs
-
DiMasi JA, Hansen RW, Grabowski HG (2003) The price of innovation: new estimates of drug development costs. J Health Econ 22: 151-185.
-
(2003)
J Health Econ
, vol.22
, pp. 151-185
-
-
Dimasi, J.A.1
Hansen, R.W.2
Grabowski, H.G.3
-
76
-
-
0038757566
-
Targeting tuberculosis and malaria through inhibition of Enoyl reductase: Compound activity and structural data
-
Kuo MR, Morbidoni HR, Alland D, Sneddon SF, Gourlie BB, et al. (2003) Targeting tuberculosis and malaria through inhibition of Enoyl reductase: compound activity and structural data. J Biol Chem 278: 20851-20859.
-
(2003)
J Biol Chem
, vol.278
, pp. 20851-20859
-
-
Kuo, M.R.1
Morbidoni, H.R.2
Alland, D.3
Sneddon, S.F.4
Gourlie, B.B.5
-
77
-
-
33847377573
-
A robustness-based approach to systems-oriented drug design
-
Kitano H (2007) A robustness-based approach to systems-oriented drug design. Nat Rev Drug Discov 6: 202-210.
-
(2007)
Nat Rev Drug Discov
, vol.6
, pp. 202-210
-
-
Kitano, H.1
-
78
-
-
58149187896
-
MODBASE, a database of annotated comparative protein structure models and associated resources
-
Pieper U, Eswar N, Webb BM, Eramian D, Kelly L, et al. (2009) MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res 37: D347-354.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Pieper, U.1
Eswar, N.2
Webb, B.M.3
Eramian, D.4
Kelly, L.5
-
79
-
-
33644876210
-
DrugBank: A comprehensive resource for in silico drug discovery and exploration
-
Wishart DS, Knox C, Guo AC, Shrivastava S, Hassanali M, et al. (2006) DrugBank: a comprehensive resource for in silico drug discovery and exploration. Nucleic Acids Res 34: D668-672.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Shrivastava, S.4
Hassanali, M.5
-
80
-
-
1342295659
-
A new algorithm for the maximum-weight clique problem
-
Ostergard PRJ (2001) A new algorithm for the maximum-weight clique problem. Nordic J Computing 8: 424-436.
-
(2001)
Nordic J Computing
, vol.8
, pp. 424-436
-
-
Ostergard, P.R.J.1
-
81
-
-
84867997005
-
A fast algorithm for the maximum clique problem
-
Ostergard PRJ (2002) A fast algorithm for the maximum clique problem. Discrete Appl Math 120: 195-205.
-
(2002)
Discrete Appl Math
, vol.120
, pp. 195-205
-
-
Ostergard, P.R.J.1
-
82
-
-
3042581007
-
Flexible structure alignment by chaining aligned fragment pairs allowing twists
-
Ye Y, Godzik A (2003) Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics 19 Suppl 2: ii246-255.
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL.2
-
-
Ye, Y.1
Godzik, A.2
-
83
-
-
34347258175
-
Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox
-
Becker SA, Feist AM, Mo ML, Hannum G, Palsson BO, et al. (2007) Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nat Protoc 2: 727-738.
-
(2007)
Nat Protoc
, vol.2
, pp. 727-738
-
-
Becker, S.A.1
Feist, A.M.2
Mo, M.L.3
Hannum, G.4
Palsson, B.O.5
-
84
-
-
34250892548
-
EHiTS: A new fast, exhaustive flexible ligand docking system
-
Zsoldos Z, Reid D, Simon A, Sadjad SB, Johnson AP (2007) eHiTS: a new fast, exhaustive flexible ligand docking system. J Mol Graph Model 26: 198-212.
-
(2007)
J Mol Graph Model
, vol.26
, pp. 198-212
-
-
Zsoldos, Z.1
Reid, D.2
Simon, A.3
Sadjad, S.B.4
Johnson, A.P.5
-
85
-
-
33646361583
-
-
Reich M, Liefeld T, Gould J, Lerner J, Tamayo P, et al. (2006) GenePattern 2.0. Nat Genet 38: 500-501.
-
(2006)
GenePattern 2.0. Nat Genet
, vol.38
, pp. 500-501
-
-
Reich, M.1
Liefeld, T.2
Gould, J.3
Lerner, J.4
Tamayo, P.5
-
86
-
-
19944418509
-
A member of the cAMP receptor protein family of transcription regulators in Mycobacterium tuberculosis is required for virulence in mice and controls transcription of the rpfA gene coding for a resuscitation promoting factor
-
Rickman L, Scott C, Hunt DM, Hutchinson T, Menendez MC, et al. (2005) A member of the cAMP receptor protein family of transcription regulators in Mycobacterium tuberculosis is required for virulence in mice and controls transcription of the rpfA gene coding for a resuscitation promoting factor. Mol Microbiol 56: 1274-1286.
-
(2005)
Mol Microbiol
, vol.56
, pp. 1274-1286
-
-
Rickman, L.1
Scott, C.2
Hunt, D.M.3
Hutchinson, T.4
Menendez, M.C.5
-
87
-
-
33750111588
-
Pyrrolidine carboxamides as a novel class of inhibitors of enoyl acyl carrier protein reductase from Mycobacterium tuberculosis
-
He X, Alian A, Stroud R, Ortiz de Montellano PR (2006) Pyrrolidine carboxamides as a novel class of inhibitors of enoyl acyl carrier protein reductase from Mycobacterium tuberculosis. J Med Chem 49: 6308-6323.
-
(2006)
J Med Chem
, vol.49
, pp. 6308-6323
-
-
He, X.1
Alian, A.2
Stroud, R.3
de Montellano, O.P.R.4
-
88
-
-
33750631883
-
Characterization of a Mycobacterium tuberculosis mutant deficient in pH-sensing adenylate cyclase Rv1264
-
Dittrich D, Keller C, Ehlers S, Schultz JE, Sander P (2006) Characterization of a Mycobacterium tuberculosis mutant deficient in pH-sensing adenylate cyclase Rv1264. Int J Med Microbiol 296: 563-566.
-
(2006)
Int J Med Microbiol
, vol.296
, pp. 563-566
-
-
Dittrich, D.1
Keller, C.2
Ehlers, S.3
Schultz, J.E.4
Sander, P.5
-
89
-
-
0345701347
-
Genes required for mycobacterial growth defined by high density mutagenesis
-
Sassetti CM, Boyd DH, Rubin EJ (2003) Genes required for mycobacterial growth defined by high density mutagenesis. Mol Microbiol 48: 77-84.
-
(2003)
Mol Microbiol
, vol.48
, pp. 77-84
-
-
Sassetti, C.M.1
Boyd, D.H.2
Rubin, E.J.3
-
90
-
-
0033039066
-
Learning from the genome sequence of Mycobacterium tuberculosis H37Rv
-
Cole ST (1999) Learning from the genome sequence of Mycobacterium tuberculosis H37Rv. FEBS Lett 452: 7-10.
-
(1999)
FEBS Lett
, vol.452
, pp. 7-10
-
-
Cole, S.T.1
-
91
-
-
20444419421
-
Genome-wide requirements for Mycobacterium tuberculosis adaptation and survival in macrophages
-
Rengarajan J, Bloom BR, Rubin EJ (2005) Genome-wide requirements for Mycobacterium tuberculosis adaptation and survival in macrophages. Proc Natl Acad Sci U S A 102: 8327-8332.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 8327-8332
-
-
Rengarajan, J.1
Bloom, B.R.2
Rubin, E.J.3
-
92
-
-
0242268400
-
Genetic requirements for mycobacterial survival during infection
-
Sassetti CM, Rubin EJ (2003) Genetic requirements for mycobacterial survival during infection. Proc Natl Acad Sci U S A 100: 12989-12994.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 12989-12994
-
-
Sassetti, C.M.1
Rubin, E.J.2
-
93
-
-
0033819143
-
The ATP binding cassette (ABC) transport systems of Mycobacterium tuberculosis
-
Braibant M, Gilot P, Content J (2000) The ATP binding cassette (ABC) transport systems of Mycobacterium tuberculosis. FEMS Microbiol Rev 24: 449-467.
-
(2000)
FEMS Microbiol Rev
, vol.24
, pp. 449-467
-
-
Braibant, M.1
Gilot, P.2
Content, J.3
-
94
-
-
28844465488
-
Purification and characterization of a functionally active Mycobacterium tuberculosis pyrroline-5-carboxylate reductase
-
Yang Y, Xu S, Zhang M, Jin R, Zhang L, et al. (2006) Purification and characterization of a functionally active Mycobacterium tuberculosis pyrroline-5-carboxylate reductase. Protein Expr Purif 45: 241-248.
-
(2006)
Protein Expr Purif
, vol.45
, pp. 241-248
-
-
Yang, Y.1
Xu, S.2
Zhang, M.3
Jin, R.4
Zhang, L.5
|