Nucleic acid sequence-based amplification in formalin-fixed and paraffin-embedded breast-cancer tissues

Journal of Clinical Pathology

Volumn 63, Issue 12, 2010, Pages 1071-1076

  Riehle, Ulrike ^a   Mader, Andreas ^a   Brandstetter, Thomas ^b   Rühe, Jürgen ^b   Zur Hausen, Axel ^a   Stickeler, Elmar ^a  

^a UNIVERSITY OF FREIBURG   (Germany)

^b UNIVERSITY OF FREIBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CASPASE 8; EPIDERMAL GROWTH FACTOR RECEPTOR 2; ESTROGEN RECEPTOR ALPHA; FORMALDEHYDE; MANGANESE SUPEROXIDE DISMUTASE; MESSENGER RNA; PARAFFIN; RIBOSOME PROTEIN; STROMELYSIN 3; Y BOX BINDING PROTEIN 1;

ARTICLE; BREAST CANCER; CANCER TISSUE; CHILD; HUMAN; HUMAN TISSUE; INTERMETHOD COMPARISON; NUCLEIC ACID SEQUENCE BASED AMPLIFICATION; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; SCHOOL CHILD; SENSITIVITY ANALYSIS;

BREAST NEOPLASMS; FEASIBILITY STUDIES; FEMALE; FORMALDEHYDE; GENES, ERBB-2; GENES, NEOPLASM; HUMANS; PARAFFIN EMBEDDING; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; RNA, NEOPLASM; SELF-SUSTAINED SEQUENCE REPLICATION; TISSUE FIXATION;

EID: 78649630710     PISSN: 00219746     EISSN: 14724146     Source Type: Journal    
DOI: 10.1136/jcp.2010.078766     Document Type: Article

References (24)

1. Finke J, Fritzen R, Ternes P, et al. An improved strategy and a useful housekeeping gene for RNA analysis from formalin-fixed, paraffin-embedded tissues by PCR. Biotechniques 1993;14:448-53. (Pubitemid 23086133)
2. Srinivasan M, Sedmak D, Jewell S. Effect of fixatives and tissue processing on the content and integrity of nucleic acids. Am J Pathol 2002;161:1961-71. (Pubitemid 35434840)
3. Inoue T, Nabeshima K, Kataoka H, et al. Feasibility of archival non-buffered formalin-fixed and paraffin-embedded tissues for PCR amplification: an analysis of resected gastric carcinoma. Pathol Int 1996;46:997-1004. (Pubitemid 27030003)
4. Godfrey TE, Kim SH, Chavira M, et al. Quantitative mRNA expression analysis from formalin-fixed, paraffin-embedded tissues using 59 nuclease quantitative reverse transcription-polymerase chain reaction. J Mol Diagn 2000;2:84-91.
5. Kievits T, van Gemen B, van Strijp D, et al. NASBA isothermal enzymatic in vitro nucleic acid amplification optimized for the diagnosis of HIV-1 infection. J Virol Methods 1991;35:273-86.
6. Samuelson A, Westmoreland D, Eccles R, et al. Development and application of a new method for amplification and detection of human rhinovirus RNA. J Virol Methods 1998;71:197-209. (Pubitemid 28196174)
7. Morre SA, Sillekens P, Jacobs MV, et al. RNA amplification by nucleic acid sequence-based amplification with an internal standard enables reliable detection of Chlamydia trachomatis in cervical scrapings and urine samples. J Clin Microbiol 1996;34:3108-14.
8. Kido C, Tsuruoka M. Measurement of the time course of DNA/RNA hybridization and RNA detection using fluorescence polarization analysis. Nucleic Acids Symp Ser 2000;(44):145-6.
9. Deiman B, van Aarle P, Sillekens P. Characteristics and applications of nucleic acid sequence-based amplification (NASBA). Mol Biotechnol 2002;20:163-79. (Pubitemid 34165499)
10. Burchill SA, Perebolte L, Johnston C, et al. Comparison of the RNA-amplification based methods RT-PCR and NASBA for the detection of circulating tumour cells. Br J Cancer 2002;86:102-9. (Pubitemid 34146349)
11. Scheler O, Glynn B, Parkel S, et al. Fluorescent labeling of NASBA amplified tmRNA molecules for microarray applications. BMC Biotechnol 2009;9:45.
12. Morisset D, Dobnik D, Hamels S, et al. NAIMA: target amplification stratagy allowing quantitative on-chip detection of GMOs. Nucleic Acid Res 2008;36:1-11.
13. Dimov IK, Garcia-Cordero JL, O'Grady J, et al. Integrated microfluidic tmRNA purification and real-time NASBA device for molecular diagnostics. Lab Chip 2008;8:2071-8.
14. Furuberg L, Mielnik M, Gulliksen A, et al. RNA amplification chip with parallel microchannels and droplet positioning using capillary valves. Microsystem Technologies 2008;14:673-81.
15. Loens K, Beck T, Ursi D, et al. Evaluation of different nucleic acid amplification techniques for the detection of M. pneumoniae, C. pneumoniae and Legionella spp. in respiratory specimens from patients with community-acquired pneumonia. J Microbiol Methods 2008;73:257-62.
16. Zhao Y, Park S, Kreiswirth BN, et al. Rapid real-time nucleic acid sequence-based amplification (NASBA)-molecular beacons platform to detect fungal and bacterial bloodstream infections. J Clin Microbiol 2009;47:2067-78.
17. Mader A, Riehle U, Brandstetter T, et al. Microarray-based amplification and detection of RNA by nucleic acid sequence based amplification. Anal Bioanal Chem 2010;397:3533-41.
18. Basaki Y, Taguchi K, Izumi H, et al. Y-box binding protein-1 (YB-1) promotes cell cycle progression through CDC6-dependent pathway in human cancer cells. Eur J Cancer 2010;46:954-65.
19. Decock J, Hendrickx W, Drijkoningen M, et al. Matrix metalloproteinase expression patterns in luminal A type breast carcinomas. Dis Markers 2007;23:189-96. (Pubitemid 46868410)
20. Couch FJ, Wang X, McWilliams RR, et al. Association of breast cancer susceptibility variants with risk of pancreatic cancer. Cancer Epidemiol Biomarkers Prev 2009;18:3044-8.
21. Udler M, Maia AT, Cebrian A, et al. Common germline genetic variation in antioxidant defense genes and survival after diagnosis of breast cancer. J Clin Oncol 2007;25:3015-23.
22. Schroeder A, Mueller O, Stocker S, et al. The RIN: an RNA integrity number for assigning integrity values to RNA measurements. BMC Mol Biol 2006;7:3.
23. Rasmussen R. Rapid Cycle Real-Time PCR, Methods and Applications. Heidelberg: Springer Press, 2001:21-34.
24. Gulliksen A, Solli L, Karlsen F, et al. Real-time nucleic acid sequence-based amplification in nanoliter volumes. Anal Chem 2004;76:9-14. (Pubitemid 38040627)