Genotyping and phylogenetic analysis of the major genes in respiratory syncytial virus isolated from infants with bronchiolitis

Japanese Journal of Infectious Diseases

Volumn 63, Issue 6, 2010, Pages 393-400

  Goto Sugai, Kazuko ^a   Tsukagoshi, Hiroyuki ^b   Mizuta, Katsumi ^c   Matsuda, Shunji ^d   Noda, Masahiro ^e   Sugai, Toshiyuki ^e   Saito, Yoshihiro ^f   Okabe, Nobuhiko ^e   Tashiro, Masato ^e   Kozawa, Kunihisa ^b   Tanaka, Ryota ^g   Morita, Yukio ^b   Nishina, Atsuyoshi ^h   Kimura, Hirokazu ^b,e  

^a NATIONAL HOSPITAL ORGANIZATION   (Japan)

^b GUNMA PREFECTURAL INSTITUTE OF PUBLIC HEALTH AND ENVIRONMENTAL SCIENCES   (Japan)

^c YAMAGATA PREFECTURAL INSTITUTE OF PUBLIC HEALTH   (Japan)

^d National Hospital Organization Ehime Medical Center   (Japan)

^e NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

^f JIKEI UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^g KYORIN UNIVERSITY   (Japan)

^h Yonezawa Women's Junior College   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCOPROTEIN; HYBRID PROTEIN; NUCLEOPROTEIN;

AMINO ACID SUBSTITUTION; ARTICLE; BACTERIAL STRAIN; BRONCHIOLITIS; CONTROLLED STUDY; DISEASE SEVERITY; GENETIC ASSOCIATION; GENETIC VARIABILITY; GENOTYPE; INCUBATION TIME; JAPAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; UNINDEXED SEQUENCE; VIRUS ISOLATION;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; BRONCHIOLITIS, VIRAL; GENOTYPE; HUMANS; INFANT; JAPAN; MOLECULAR SEQUENCE DATA; NUCLEOCAPSID PROTEINS; PHYLOGENY; RESPIRATORY SYNCYTIAL VIRUS INFECTIONS; RESPIRATORY SYNCYTIAL VIRUS, HUMAN; SEQUENCE ANALYSIS, DNA; VIRAL ENVELOPE PROTEINS; VIRAL FUSION PROTEINS; VIRAL PROTEINS;

EID: 78649617662     PISSN: 13446304     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (34)

1. Vardas, E., Blaauw, D. and McAnerney, J. (1999): The epidemiology of respiratory syncytial virus (RSV) infections in South African children. S. Afr. Med. J., 89, 1079-1084.
2. Peter, L.C. and James, E.C., Jr. (2006): Respiratory syncytial virus and metapneumovirus. p. 1601-1646. In Knipe, D.M., Howley, P.M., Griffin, D.E., et al. (eds), Fields Virology. Lippincott Willams & Wilkins, Philadelphia.
3. Shay, D.K., Holman, R.C., Newman, R.D., et al. (1999): Bronchiolitis-associated hospitalizations among US children, 1980-1996. JAMA, 282, 1440-1446.
4. Leung, A.K., Kellner, J.D. and Davies, H.D. (2005): Respiratory syncytial virus bronchiolitis. J. Natl. Med. Assoc., 97, 1708-1713.
5. Yorita, K.L., Holman, R.C. and Steiner, C.A. (2007): Severe bronchiolitis and respiratory syncytial virus among young children in Hawaii. Pediatr. Infect. Dis. J., 26, 1081-1088.
6. Mohapatra, S.S. and Boyapalle, S. (2008): Epidemiologic, experimental, and clinical links between respiratory syncytial virus infection and asthma. Clin. Microbiol. Rev., 21, 495-504.
7. Smyth, R.L. and Openshaw, P.J. (2006): Bronchiolitis. Lancet, 368, 312-322.
8. Pérez-Yarza, E.G., Moreno, A., Lázaro, P., et al. (2007): The association between respiratory syncytial virus infection and the development of childhood asthma: a systematic review of the literature. Pediatr. Infect. Dis. J., 26, 733-739.
9. Sigurs, N., Bjarnason, R., Sigurbergsson, F., et al. (2000): Respiratory syncytial virus bronchiolitis in infancy is an important risk factor for asthma and allergy at age 7. Am. J. Respir. Crit. Care Med., 161, 1501-1507.
10. Roca, A., Loscertales, M.P., Quintó, L., et al. (2001): Genetic variability among group A and B respiratory syncytial viruses in Mozambique: identification of a new cluster of group B isolates. J. Gen. Virol., 82, 103-111.
11. Parveen, S., Sullender, W.M., Fowler, K., et al. (2006): Genetic variability in the G protein gene of group A and B respiratory syncytial viruses from India. J. Clin. Microbiol., 44, 3055-3064.
12. Martinello, R.A., Chen, M.D., Weibel, C., et al. (2002): Correlation between respiratory syncytial virus genotype and severity of illness. J. Infect. Dis., 186, 839-842.
13. Campanini, G., Percivalle, E., Baldanti, F., et al. (2007): Human respiratory syncytial virus (hRSV) RNA quantification in nasopharyngeal secretions identifies the hRSV etiologic role in acute respiratory tract infections of hospitalized infants. J. Clin. Virol., 39, 119-124.
14. Sato, M., Saito, R., Sakai, T., et al. (2005): Molecular epidemiology of respiratory syncytial virus infections among children with acute respiratory symptoms in a community over three seasons. J. Clin. Microbiol., 43, 36-40.
15. Maitreyi, R.S., Broor, S., Kabra, S.K., et al. (2000): Rapid detection of respiratory viruses by centrifugation enhanced cultures from children with acute lower respiratory tract infections. J. Clin. Virol., 16, 41-47.
16. Sullender, W.M., Sun, L. and Anderson, L.J. (1993): Analysis of respiratory syncytial virus genetic variability with amplified cDNAs. J. Clin. Microbiol., 31, 1224-1231.
17. Cane, P.A., Matthews, D.A. and Pringle, C.R. (1991): Identification of variable domains of the attachment (G) protein of subgroup A respiratory syncytial viruses. J. Gen. Virol., 72, 2091-2096.
18. Kim, Y.K., Choi, E.H. and Lee, H.J. (2007): Genetic variability of the fusion protein and circulation patterns of genotypes of the respiratory syncytial virus. J. Med. Virol., 79, 820-828.
19. Osiowy, C. (1998): Direct detection of respiratory syncytial virus, parainfluenza virus, and adenovirus in clinical respiratory specimens by a multiplex reverse transcription-PCR assay. J. Clin. Microbiol., 36, 3149-3154.
20. Morita, Y., Suzuki, T., Shiono, M., et al. (2007): Sequence and phylogenetic analysis of the nucleoprotein (N) gene in measles viruses prevalent in Gunma, Japan, in 2007. Jpn. J. Infect. Dis., 60, 402-404.
21. Johnson, P.R. and Collins, P.L. (1988): The A and B subgroups of human respiratory syncytial virus: comparison of intergenic and gene-overlap sequences. J. Gen. Virol., 69, 2901-2906.
22. Zheng, H., Storch, G.A., Zang, C., et al. (1999): Genetic variability in envelope-associated protein genes of closely related group A strains of respiratory syncytial virus. Virus Res., 59, 89-99.
23. Saitou, N. and Nei, M. (1987): The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
24. Katayama, K., Shirato-Horikoshi, H., Kojima, S., et al. (2002): Phylogenetic analysis of the complete genome of 18 Norwalk-like viruses. Virology, 299, 225-239.
25. Botosso, V.F., Zanotto, P.M., Ueda, M., et al. (2009): Positive selection results in frequent reversible amino acid replacements in the G protein gene of human respiratory syncytial virus. PLoS Pathog., S, e1000254.
26. Hall, C.B., Walsh, E.E., Schnabel, K.C., et al. (1990): Occurrence of groups A and B of respiratory syncytial virus over 15 years: associated epidemiologic and clinical characteristics in hospitalized and ambulatory children. J. Infect. Dis., 162, 1283-1290.
27. Walsh, E.E., McConnochie, K.M., Long, C.E., et al. (1997): Severity of respiratory syncytial virus infection is related to virus strain. J. Infect. Dis., 175, 814-820.
28. Zlateva, K.T., Lemey, P., Vandamme, A.M., et al. (2004): Molecular evolution and circulation patterns of human respiratory syncytial virus subgroup a: positively selected sites in the attachment g glycoprotein. J. Virol., 78, 4675-4683.
29. Zhang, Y., Xu, W., Shen, K., et al. (2007): Genetic variability of group A and B respiratory syncytial viruses isolated from 3 provinces in China. Arch. Virol., 152, 1425-1434.
30. Nakamura, M., Itokazu, K., Taira, K., et al. (2009): Genotypic and phylogenetic analysis of the G gene of respiratory syncytial virus isolates in Okinawa, Japan, 2008. Jpn. J. Infect. Dis., 62, 326-327.
31. Sullender, W.M. (2000): Respiratory syncytial virus genetic and antigenic diversity. Clin. Microbiol. Rev., 13, 1-15.
32. Riccetto, A.G., Ribeiro, J.D., Silva, M.T., et al. (2006): Respiratory syncytial virus (RSV) in infants hospitalized for acute lower respiratory tract disease: incidence and associated risks. Braz. J. Infect. Dis., 10, 357-361.
33. Delgado, M.F., Coviello, S. and Monsalvo, A.C. (2009): Lack of antibody affinity maturation due to poor Toll-like receptor stimulation leads to enhanced respiratory syncytial virus disease. Nat. Med., 15, 34-41.
34. Awomoyi, A.A., Rallabhandi, P., Pollin, T.I., et al. (2007): Association of TLR4 polymorphisms with symptomatic respiratory syncytial virus infection in high-risk infants and young children. J. Immunol., 179, 3171-3177.