On the measurement of 15N-{1H} nuclear Overhauser effects. 2. Effects of the saturation scheme and water signal suppression

Journal of Magnetic Resonance

Volumn 207, Issue 2, 2010, Pages 294-303

  Ferrage, Fabien ^a,b   Reichel, Amy ^c   Battacharya, Shibani ^b   Cowburn, David ^b   Ghose, Ranajeet ^c,d  

^a ECOLE NORMALE SUPÉRIEURE   (France)

^b NEW YORK STRUCTURAL BIOLOGY CENTER   (United States)

^c CITY UNIVERSITY OF NEW YORK   (United States)

^d CITY COLLEGE OF NEW YORK   (United States)

Author keywords

Composite pulse decoupling; Homogeneous master equation; Nuclear Overhauser effect; Protein dynamics; Radiation damping

Indexed keywords

DAMPING; NUCLEAR MAGNETIC RESONANCE; PROTEINS; RADIATION; SPIN-LATTICE RELAXATION; SYNCHROTRON RADIATION;

COMPOSITE PULSE; MASTER EQUATIONS; NUCLEAR OVERHAUSER EFFECTS; PROTEIN DYNAMICS; RADIATION DAMPING;

SPIN DYNAMICS;

ISOTOPE; NITROGEN; PROTON; WATER;

ALGORITHM; ARTICLE; CHEMISTRY; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; RADIATION;

ALGORITHMS; ISOTOPES; MAGNETIC RESONANCE SPECTROSCOPY; NITROGEN; NITROGEN ISOTOPES; PROTONS; RADIATION; WATER;

EID: 78649444679     PISSN: 10907807     EISSN: 10960856     Source Type: Journal    
DOI: 10.1016/j.jmr.2010.09.014     Document Type: Article

References (35)

1. A.G. Palmer 3rd NMR probes of molecular dynamics: overview and comparison with other techniques Annu. Rev. Biophys. Biomol. Struct. 30 2001 129 155
2. L.E. Kay NMR studies of protein structure and dynamics J. Magn. Reson. 173 2005 193 207
3. K. Henzler-Wildman, and D. Kern Dynamic personalities of proteins Nature 450 2007 964 972
4. 9k J. Am. Chem. Soc. 115 1993 9832 9833
5. L. Spyracopoulos, and B.D. Sykes Thermodynamic insights into proteins from NMR spin relaxation studies Curr. Opin. Struct. Biol. 11 2001 555 559
6. 15N NMR relaxation in proteins J. Am. Chem. Soc. 123 2001 3055 3063
7. G. Nodet, and D. Abergel An overview of recent developments in the interpretation and prediction of fast internal protein dynamics Eur. Biophys. J. 36 2007 985 993
8. J.J. Prompers, and R. Bruschweiler Thermodynamic interpretation of NMR relaxation parameters in proteins in the presence of motional correlations J. Phys. Chem. B 104 2000 11416 11424
9. J. Cavanagh, W.J. Fairbrother, A.G. Palmer III, M. Rance, and N.J. Skelton Protein NMR Spectroscopy 2007 Academic Press San Diego
10. G. Zhu, Y. Xia, L.K. Nicholson, and K.H. Sze Protein dynamics measurements by TROSY-based NMR experiments J. Magn. Reson. 143 2000 423 426
11. 2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution Proc. Natl. Acad. Sci. USA 94 1997 12366 12371
12. 1H} NOE experiment at high magnetic field strengths J. Biomol. NMR 37 2007 147 157 (Pubitemid 46157979)
13. 1H} nuclear Overhauser effects J. Magn. Reson. 192 2008 302 313
14. 1H} nuclear Overhauser effect measurements in the presence of cross-correlated relaxation J. Am. Chem. Soc. 131 2009 6048 6049
15. L. diBari, and M.H. Levitt Steady state in magnetic resonance pulse experiments Phys. Rev. Lett. 69 1992 3124 3127
16. R. Ghose Average Liouvillian theory in nuclear magnetic resonance - principles, properties and applications Concepts Magn. Reson. 12 2000 152 172
17. M.A. Smith, H. Hu, and A.J. Shaka Improved broadband inversion performance for NMR in liquids J. Magn. Reson. 151 2001 269 283
18. A.J. Shaka, J. Keeler, and R. Freeman Evaluation of a new broadband decoupling sequence: WALTZ16 J. Magn. Reson. 53 1983 313 340
19. A.J. Shaka, P.B. Barker, and R. Freeman Computer-optimized decoupling scheme for wideband applications and low-level operation J. Magn. Reson. 64 1985 547 552
20. J. Jeener Superoperators in magnetic-resonance Adv. Magn. Reson. 10 1982 1 51
21. T.O. Levante, and R.R. Ernst Homogeneous versus inhomogeneous quantum-mechanical master equations Chem. Phys. Lett. 241 1995 73 78
22. P. Allard, M. Helgstrand, and T. Hard The complete homogeneous master equation for a heteronuclear two-spin system in the basis of cartesian product operators J. Magn. Reson. 134 1998 7 16
23. L. diBari, and M.H. Levitt The homogeneous master equation and the manipulation of relaxation networks Bull. Magn. Reson. 16 1994 94 114
24. L.E. Kay, E.P. Keifer, and T. Saarinen Pure absorption gradient enhanced heteronuclear single quantum correlation spectroscopy with improved sensitivity J. Am. Chem. Soc. 114 1992 10663 10665
25. R.H. Ernst, G. Bodenhausen, and A. Wokaun Principles of Nuclear Magnetic Resonance in One and Two Dimensions 1987 Clarendon Press Oxford
26. A. Jerschow Thermal convection currents in NMR: flow profiles and implications for coherence pathway selection J. Magn. Reson. 145 2000 125 131
27. J. Peng, and G. Wagner Mapping of the spectral densities of N-H bond motions in eglin c using heteronuclear relaxation experiments Biochemistry 31 1992 8571 8586
28. 9k studied by two-dimensional proton detected NMR spectroscopy Biochemistry 31 1992 4856 4866
29. N. Bloembergen, and R.V. Pound Radiation damping in magnetic resonance experiments Phys. Rev. 95 1954 8 12
30. J.H. Chen, B. Cutting, and G. Bodenhausen Measurement of radiation damping rate constants in nuclear magnetic resonance by inversion recovery and automated compensation of selective pulses J. Chem. Phys. 112 2000 6511 6514
31. S. Grzesiek, A. Bax, The importance of not saturating water in protein NMR. Application to sensitivity enhancement, and NOE measurements J. Am. Chem. Soc. 115 1993 12593 12594
32. 15N relaxation with monomer/dimer equilibration J. Mol. Biol. 266 1997 173 194
33. D. Yang, Y.K. Mok, J.D. Forman-Kay, N.A. Farrow, and L.E. Kay Contributions to protein entropy and heat capacity from bond vector motions measured by NMR spin relaxation J. Mol. Biol. 272 1997 790 804
34. L. Vugmeyster, O. Trott, C.J. McKnight, D.P. Raleigh, and A.G. Palmer 3rd Temperature-dependent dynamics of the villin headpiece helical subdomain, an unusually small thermostable protein J. Mol. Biol. 320 2002 841 854
35. G. Lipari, A. Szabo, Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory, and range of validity J. Am. Chem. Soc. 104 1982 4546 4559