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Volumn 6, Issue 1, 2010, Pages

DPI-ELISA: A fast and versatile method to specify the binding of plant transcription factors to DNA in vitro

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; ESCHERICHIA COLI; EUKARYOTA;

EID: 78649326232     PISSN: None     EISSN: 17464811     Source Type: Journal    
DOI: 10.1186/1746-4811-6-25     Document Type: Article
Times cited : (79)

References (27)
  • 1
    • 84934444697 scopus 로고    scopus 로고
    • Analysis of plant regulatory DNA sequences by transient protoplast assays and computer aided sequence evaluation
    • Berendzen KW, Harter K, Wanke D. Analysis of plant regulatory DNA sequences by transient protoplast assays and computer aided sequence evaluation. Methods Mol Biol 2009, 479:311-335.
    • (2009) Methods Mol Biol , vol.479 , pp. 311-335
    • Berendzen, K.W.1    Harter, K.2    Wanke, D.3
  • 2
    • 84934436833 scopus 로고    scopus 로고
    • Analysis of plant regulatory DNA sequences by the yeast-one-hybrid assay
    • Wanke D, Harter K. Analysis of plant regulatory DNA sequences by the yeast-one-hybrid assay. Methods Mol Biol 2009, 479:291-309.
    • (2009) Methods Mol Biol , vol.479 , pp. 291-309
    • Wanke, D.1    Harter, K.2
  • 3
    • 47849093350 scopus 로고    scopus 로고
    • Discovery and verification of functional single nucleotide polymorphisms in regulatory genomic regions: Current and developing technologies
    • Chorley BN, Wang X, Campbell MR, Pittman GS, Noureddine MA, Bell DA. Discovery and verification of functional single nucleotide polymorphisms in regulatory genomic regions: Current and developing technologies. Mutat Res-Rev Mutat 2008, 659:147-157.
    • (2008) Mutat Res-Rev Mutat , vol.659 , pp. 147-157
    • Chorley, B.N.1    Wang, X.2    Campbell, M.R.3    Pittman, G.S.4    Noureddine, M.A.5    Bell, D.A.6
  • 4
    • 0031911871 scopus 로고    scopus 로고
    • Theoretical studies on the mobility-shift assay of protein-DNA complexes
    • 10.1002/elps.1150190202, 9548271
    • Cann JR. Theoretical studies on the mobility-shift assay of protein-DNA complexes. Electrophoresis 1998, 19:127-141. 10.1002/elps.1150190202, 9548271.
    • (1998) Electrophoresis , vol.19 , pp. 127-141
    • Cann, J.R.1
  • 5
    • 34047234460 scopus 로고    scopus 로고
    • High-throughput methods of regulatory element discovery
    • 10.2144/000112322, 17191608, 675, 677 passim
    • Hudson ME, Snyder M. High-throughput methods of regulatory element discovery. Biotechniques 2006, 41:673, 675, 677 passim. 10.2144/000112322, 17191608.
    • (2006) Biotechniques , vol.41 , pp. 673
    • Hudson, M.E.1    Snyder, M.2
  • 6
    • 0028067523 scopus 로고
    • A non-radioactive assay for the detection and quantitation of a DNA binding protein
    • 10.1093/nar/22.18.3806, 308366, 7937095
    • Hibma MH, Ely SJ, Crawford L. A non-radioactive assay for the detection and quantitation of a DNA binding protein. Nucleic Acids Res 1994, 22:3806-3807. 10.1093/nar/22.18.3806, 308366, 7937095.
    • (1994) Nucleic Acids Res , vol.22 , pp. 3806-3807
    • Hibma, M.H.1    Ely, S.J.2    Crawford, L.3
  • 7
    • 0028833764 scopus 로고
    • Nonradioactive assay for sequence-specific DNA binding proteins
    • 1011-1004
    • Gubler ML, Abarzua P. Nonradioactive assay for sequence-specific DNA binding proteins. Biotechniques 1995, 18:1008, 1011-1004.
    • (1995) Biotechniques , vol.18 , pp. 1008
    • Gubler, M.L.1    Abarzua, P.2
  • 8
    • 0031213898 scopus 로고    scopus 로고
    • Nonisotopic quantitative analysis of protein-DNA interactions at equilibrium
    • 10.1006/abio.1997.2231, 9245437
    • Benotmane AM, Hoylaerts MF, Collen D, Belayew A. Nonisotopic quantitative analysis of protein-DNA interactions at equilibrium. Anal Biochem 1997, 250:181-185. 10.1006/abio.1997.2231, 9245437.
    • (1997) Anal Biochem , vol.250 , pp. 181-185
    • Benotmane, A.M.1    Hoylaerts, M.F.2    Collen, D.3    Belayew, A.4
  • 9
    • 0035866185 scopus 로고    scopus 로고
    • Development of a sensitive multi-well colorimetric assay for active NFkappaB
    • 10.1093/nar/29.4.e21, 29628, 11160941
    • Renard P, Ernest I, Houbion A, Art M, Le Calvez H, Raes M, Remacle J. Development of a sensitive multi-well colorimetric assay for active NFkappaB. Nucleic Acids Res 2001, 29:E21. 10.1093/nar/29.4.e21, 29628, 11160941.
    • (2001) Nucleic Acids Res , vol.29
    • Renard, P.1    Ernest, I.2    Houbion, A.3    Art, M.4    Le Calvez, H.5    Raes, M.6    Remacle, J.7
  • 10
    • 0037106029 scopus 로고    scopus 로고
    • New ELISA technique for analysis of p53 protein/DNA binding properties
    • 10.1016/S0022-1759(02)00182-5, 12165443
    • Jagelska E, Brazda V, Pospisilova S, Vojtesek B, Palecek E. New ELISA technique for analysis of p53 protein/DNA binding properties. J Immunol Methods 2002, 267:227-235. 10.1016/S0022-1759(02)00182-5, 12165443.
    • (2002) J Immunol Methods , vol.267 , pp. 227-235
    • Jagelska, E.1    Brazda, V.2    Pospisilova, S.3    Vojtesek, B.4    Palecek, E.5
  • 11
    • 15444377989 scopus 로고    scopus 로고
    • Development of a high-throughput plate-based chemiluminescent transcription factor assay
    • 10.1177/1087057103261446, 15191650
    • Rosenau C, Emery D, Kaboord B, Qoronfleh MW. Development of a high-throughput plate-based chemiluminescent transcription factor assay. J Biomol Screen 2004, 9:334-342. 10.1177/1087057103261446, 15191650.
    • (2004) J Biomol Screen , vol.9 , pp. 334-342
    • Rosenau, C.1    Emery, D.2    Kaboord, B.3    Qoronfleh, M.W.4
  • 12
    • 70349233864 scopus 로고    scopus 로고
    • A pivotal role of the basic leucine zipper transcription factor bZIP53 in the regulation of Arabidopsis seed maturation gene expression based on heterodimerization and protein complex formation
    • 10.1105/tpc.108.062968, 2714925, 19531597
    • Alonso R, Onate-Sanchez L, Weltmeier F, Ehlert A, Diaz I, Dietrich K, Vicente-Carbajosa J, Droge-Laser W. A pivotal role of the basic leucine zipper transcription factor bZIP53 in the regulation of Arabidopsis seed maturation gene expression based on heterodimerization and protein complex formation. Plant Cell 2009, 21:1747-1761. 10.1105/tpc.108.062968, 2714925, 19531597.
    • (2009) Plant Cell , vol.21 , pp. 1747-1761
    • Alonso, R.1    Onate-Sanchez, L.2    Weltmeier, F.3    Ehlert, A.4    Diaz, I.5    Dietrich, K.6    Vicente-Carbajosa, J.7    Droge-Laser, W.8
  • 14
    • 48149089804 scopus 로고    scopus 로고
    • Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function
    • Ciolkowski I, Wanke D, Birkenbihl RP, Somssich IE. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function. Plant Mol Biol 2008, 68:92.
    • (2008) Plant Mol Biol , vol.68 , pp. 92
    • Ciolkowski, I.1    Wanke, D.2    Birkenbihl, R.P.3    Somssich, I.E.4
  • 16
    • 0028409860 scopus 로고
    • Light-regulated modification and nuclear translocation of cytosolic G-box binding factors in parsley
    • 10.1105/tpc.6.4.545, 160457, 8205004
    • Harter K, Kircher S, Frohnmeyer H, Krenz M, Nagy F, Schafer E. Light-regulated modification and nuclear translocation of cytosolic G-box binding factors in parsley. Plant Cell 1994, 6:545-559. 10.1105/tpc.6.4.545, 160457, 8205004.
    • (1994) Plant Cell , vol.6 , pp. 545-559
    • Harter, K.1    Kircher, S.2    Frohnmeyer, H.3    Krenz, M.4    Nagy, F.5    Schafer, E.6
  • 18
    • 0034192491 scopus 로고    scopus 로고
    • The WRKY superfamily of plant transcription factors
    • 10.1016/S1360-1385(00)01600-9, 10785666
    • Eulgem T, Rushton PJ, Robatzek S, Somssich IE. The WRKY superfamily of plant transcription factors. Trends Plant Sci 2000, 5:206. 10.1016/S1360-1385(00)01600-9, 10785666.
    • (2000) Trends Plant Sci , vol.5 , pp. 206
    • Eulgem, T.1    Rushton, P.J.2    Robatzek, S.3    Somssich, I.E.4
  • 19
    • 0035999364 scopus 로고    scopus 로고
    • Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound-induced signaling
    • 10.1105/tpc.010412, 150679, 11971132
    • Rushton PJ, Reinstadler A, Lipka V, Lippok B, Somssich IE. Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound-induced signaling. Plant Cell 2002, 14:749-762. 10.1105/tpc.010412, 150679, 11971132.
    • (2002) Plant Cell , vol.14 , pp. 749-762
    • Rushton, P.J.1    Reinstadler, A.2    Lipka, V.3    Lippok, B.4    Somssich, I.E.5
  • 20
    • 33845873578 scopus 로고    scopus 로고
    • The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons
    • Babu MM, Iyer LM, Balaji S, Aravind L. The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons. Nucleic Acids Res 2006, 34:20.
    • (2006) Nucleic Acids Res , vol.34 , pp. 20
    • Babu, M.M.1    Iyer, L.M.2    Balaji, S.3    Aravind, L.4
  • 21
    • 44249092978 scopus 로고    scopus 로고
    • Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots
    • 10.1186/1471-2164-9-194, 2390551, 18442363
    • Mangelsen E, Kilian J, Berendzen KW, Kolukisaoglu UH, Harter K, Jansson C, Wanke D. Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots. BMC Genomics 2008, 9:194. 10.1186/1471-2164-9-194, 2390551, 18442363.
    • (2008) BMC Genomics , vol.9 , pp. 194
    • Mangelsen, E.1    Kilian, J.2    Berendzen, K.W.3    Kolukisaoglu, U.H.4    Harter, K.5    Jansson, C.6    Wanke, D.7
  • 22
    • 0033200227 scopus 로고    scopus 로고
    • Early nuclear events in plant defence signalling: rapid gene activation by WRKY transcription factors
    • Eulgem T, Rushton PJ, Schmelzer E, Hahlbrock K, Somssich IE. Early nuclear events in plant defence signalling: rapid gene activation by WRKY transcription factors. EMBO J 1999, 18:99.
    • (1999) EMBO J , vol.18 , pp. 99
    • Eulgem, T.1    Rushton, P.J.2    Schmelzer, E.3    Hahlbrock, K.4    Somssich, I.E.5
  • 23
    • 16644366420 scopus 로고    scopus 로고
    • Stimulus-dependent, promoter-specific binding of transcription factor WRKY1 to Its native promoter and the defense-related gene PcPR1-1 in Parsley
    • Turck F, Zhou A, Somssich IE. Stimulus-dependent, promoter-specific binding of transcription factor WRKY1 to Its native promoter and the defense-related gene PcPR1-1 in Parsley. Plant Cell 2004, 16:85.
    • (2004) Plant Cell , vol.16 , pp. 85
    • Turck, F.1    Zhou, A.2    Somssich, I.E.3
  • 24
    • 33947394366 scopus 로고    scopus 로고
    • Expression of AtWRKY33 encoding a pathogen- or PAMP-responsive WRKY transcription factor is regulated by a composite DNA motif containing W box elements
    • 10.1094/MPMI-20-4-0420, 17427812
    • Lippok B, Birkenbihl RP, Rivory G, Brummer J, Schmelzer E, Logemann E, Somssich IE. Expression of AtWRKY33 encoding a pathogen- or PAMP-responsive WRKY transcription factor is regulated by a composite DNA motif containing W box elements. Mol Plant Microbe Interact 2007, 20:420-429. 10.1094/MPMI-20-4-0420, 17427812.
    • (2007) Mol Plant Microbe Interact , vol.20 , pp. 420-429
    • Lippok, B.1    Birkenbihl, R.P.2    Rivory, G.3    Brummer, J.4    Schmelzer, E.5    Logemann, E.6    Somssich, I.E.7
  • 25
    • 23944459205 scopus 로고    scopus 로고
    • BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK
    • Kooiker M, Airoldi CA, Losa A, Manzotti PS, Finzi L, Kater MM, Colombo L. BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK. Plant Cell 2005, 17:9.
    • (2005) Plant Cell , vol.17 , pp. 9
    • Kooiker, M.1    Airoldi, C.A.2    Losa, A.3    Manzotti, P.S.4    Finzi, L.5    Kater, M.M.6    Colombo, L.7
  • 26
    • 0038079842 scopus 로고    scopus 로고
    • The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3
    • 10.1046/j.1365-313X.2003.01767.x, 12795701
    • Santi L, Wang Y, Stile MR, Berendzen K, Wanke D, Roig C, Pozzi C, Muller K, Muller J, Rohde W, Salamini F. The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3. Plant J 2003, 34:813-826. 10.1046/j.1365-313X.2003.01767.x, 12795701.
    • (2003) Plant J , vol.34 , pp. 813-826
    • Santi, L.1    Wang, Y.2    Stile, M.R.3    Berendzen, K.4    Wanke, D.5    Roig, C.6    Pozzi, C.7    Muller, K.8    Muller, J.9    Rohde, W.10    Salamini, F.11
  • 27
    • 0020374178 scopus 로고
    • Optimizing the o-phenylenediamine assay for horseradish peroxidase: effects of phosphate and pH, substrate and enzyme concentrations, and stopping reagents
    • Bovaird JH, Ngo TT, Lenhoff HM. Optimizing the o-phenylenediamine assay for horseradish peroxidase: effects of phosphate and pH, substrate and enzyme concentrations, and stopping reagents. Clin Chem 1982, 28:6.
    • (1982) Clin Chem , vol.28 , pp. 6
    • Bovaird, J.H.1    Ngo, T.T.2    Lenhoff, H.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.