Genetic relationships among 22 Taxa of bamboo revealed by ISSR and EST-based random primers

Biochemical Genetics

Volumn 48, Issue 11-12, 2010, Pages 1015-1025

  Mukherjee, Arup K ^a,c   Ratha, Shibani ^a   Dhar, Sujaya ^a   Debata, Akhil K ^a   Acharya, Pradosh K ^a   Mandal, Sudhamoy ^b   Panda, Pratap C ^a   Mahapatra, Ajay K ^a  

^a Regional Plant Resource Centre India   (India)

^b INDIAN INSTITUTE OF HORTICULTURAL RESEARCH   (India)

^c CENTRAL INSTITUTE FOR COTTON RESEARCH   (India)

Author keywords

Bamboo; EST SSR; Genetic diversity; ISSR

Indexed keywords

ARTICLE; BAMBOO; BAMBUSA; EXPRESSED SEQUENCE TAG; GENE LOCUS; GENETIC SIMILARITY; GENETIC VARIABILITY; INTER SIMPLE SEQUENCE REPEAT; MOLECULAR PHYLOGENY; NONHUMAN; PHYLOGENETIC TREE; PLANT IDENTIFICATION; PLANT MORPHOLOGY; SPECIES IDENTIFICATION;

CLUSTER ANALYSIS; DNA PRIMERS; DNA, PLANT; EXPRESSED SEQUENCE TAGS; GENETIC LOCI; GENETIC VARIATION; GENOME, PLANT; MINISATELLITE REPEATS; PHYLOGENY; PHYLOGEOGRAPHY; POACEAE;

BAMBUSA;

EID: 78649317659     PISSN: 00062928     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10528-010-9390-8     Document Type: Article

References (39)

1. MASMG Akond N Watanabe Y Furuta 2007 Exploration of genetic diversity among Xinjiang Triticum and Triticum polonicum by AFLP markers J Appl Genet 48 25 33 17272858
2. NA Barkley ML Newman MW Hotchkiss GA Pederson 2005 Assessment of genetic diversity and phylogenetic relationship of a temperate bamboo collection by using transferred EST-SSR markers Genome 48 731 737 1:CAS:528:DC%2BD2MXhtFegtLzM 10.1139/g05-022 16094440 (Pubitemid 41483430)
3. Bennet SSR, Gaur RC (1990) Thirty-seven bamboos growing in India. Controller of Publications, Government of India, New Delhi, pp 17-18
4. S Bhattacharya M Das R Bar A Pal 2006 Morphological and molecular characterization of Bambusa tulda with a note on flowering Ann Bot 98 529 535 1:CAS:528:DC%2BD28XhtVequrbM 10.1093/aob/mcl143 16845134 (Pubitemid 44298386)
5. CK Chou YH Hwang 1985 A biochemical aspect of phylogenetic study of Bambusaceae in Taiwan 3: the genera Arthrostylidium, Chimonobambusa and Dendrocalamus Bot Bull Acad Sin 26 155 170 1:CAS:528:DyaL2MXlsFOgtLs%3D
6. Chua KS, Soong BC, Tan HTW (1996) The bamboos of Singapore. Int Plant Genet Res Inst, Singapore, pp 30-32
7. M Das S Bhattacharya A Pal 2005 Generation and characterization of SCARs by cloning and sequencing of RAPD products: a strategy for species specific marker development in bamboo Ann Bot 95 835 841 1:CAS:528:DC%2BD2MXjvFOrtr8%3D 10.1093/aob/mci088 15731116 (Pubitemid 41238671)
8. M Das S Bhattacharya J Basak A Pal 2007 Phylogenetic relationships among the bamboo species as revealed by morphological characters and polymorphism analyses Biol Plant 51 4 667 672 1:CAS:528:DC%2BD1cXislGhsLw%3D 10.1007/s10535-007-0140-7 (Pubitemid 350163617)
9. M Das S Bhattacharya P Singh TS Filgueiras A Pal 2008 Bamboo taxonomy and diversity in the era of molecular markers Adv Bot Res 47 225 268 1:CAS:528:DC%2BD1cXhtFyqtb3N 10.1016/S0065-2296(08)00005-0
10. Ding Y (1998) Systematic studies on Phyllostachys. Ph.D. dissertation, Nanjing University, China
11. JJ Doyle JL Doyle 1990 Isolation of plant DNA from fresh tissue Focus 12 13 15
12. Dransfield S, Widjaja EA (1995) Plant resources of South-East Asia, 7: bamboos. Backhuys Publishers, Leiden
13. E Friar G Kochert 1991 Bamboo germplasm screening with nuclear restriction fragment length polymorphisms Theor Appl Genet 82 697 703 1:CAS:528:DyaK38XotVGltQ%3D%3D 10.1007/BF00227313
14. E Friar G Kochert 1994 A study of genetic variation and evolution of Phyllostachys (Bambusoideae: Poaceae) using nuclear restriction fragment length polymorphisms Theor Appl Genet 89 265 270 10.1007/BF00225152
15. M Gherardi B Mangin B Goffient BD Bonnet T Huguet 1998 Method to measure genetic distance between allogamous populations of alfalfa (Medicago sativa) using RAPD molecular markers Theor Appl Genet 96 406 412 1:CAS:528: DyaK1cXivVWls7s%3D 10.1007/s001220050756 (Pubitemid 28178545)
16. Gielis J, Everaert I, De LM (1997) Analysis of genetic variability and relationships in Phyllostachys using random amplified polymorphic DNA. In: Chapman GP (ed) The bamboos. Academic Press, London, pp 107-124
17. JY Hsiao LH Rieseberg 1994 Population genetic structure of Yushania niitakayamensis (Bambusoideae, Poaceae) in Taiwan Mol Ecol 3 201 208 10.1111/j.1365-294X.1994.tb00053.x
18. P Jaccard 1908 Nouvelles rescherches sur la distribution florale Bull Soc Vaud Sci Nat 42 223 270
19. Kobayashi M (1997) Phylogeny of world bamboos analyzed by restriction fragment length polymorphism of chloroplast DNA. In: Chapman GP (ed) The bamboos. Linnaean Society, London, pp 227-234
20. Kumar M (2004) The bamboo book: field guide (FG 02 05/05). National Mission on Bamboo Applications, TIFAC, Department of Science and Technology, Government of India, New Delhi
21. CC Lai JY Hsiao 1997 Genetic variation of Phyllostachys pubescens (Bambusoideae, Poaceae) in Taiwan based on DNA polymorphisms Bot Bull Acad Sin 38 145 152 1:CAS:528:DyaK2sXls1Wjtbs%3D
22. Li DZ (1997) The flora of China Bambusoideae project: problem and current understanding of bamboo taxonomy in China. In: Chapman GP (ed) The bamboos. Academic Press, London, pp 61-81
23. P Li X Zhang Y Chen G Lu G Zhou Y Wang 2008 Genetic diversity and germplasm resource research ontung tree (Vernicia fordii) cultivars, investigated by inter-simple sequence repeats Afri J Biotech 7 1054 1059
24. XC Lin XS Ruan YF Lou XQ Guo W Fang 2009 Genetic similarity among cultivars of Phyllostachys pubescens Plant Syst Evol 277 67 73 10.1007/s00606-008-0104-1
25. JP Loh R Kiew O Set LH Gan YY Gan 2000 A study of genetic variation and relationships within the bamboo subtribe Bambusinae using amplified fragment length polymorphism Ann Bot 85 607 612 1:CAS:528:DC%2BD3cXivVCjtrw%3D 10.1006/anbo.2000.1109
26. ML Marulanda P Marquez X Londono 2002 AFLP analysis of Guadua angustifolia (Poaceae: Bambusoideae) in Columbia with emphasis on the coffee region Bamboo Science and Culture 16 1 32 42
27. ML Marulanda AM Lopez JL Claroz 2007 Analyzing the genetic diversity of Guadua spp. in Colombia using rice and sugarcane microsatellites Crop Breeding and Applied Biotechnology 7 43 51 1:CAS:528:DC%2BD1cXislCitbo%3D
28. S Nayak GR Rout 2005 Isolation and characterization of microsatellites in Bambusa arundinacea and cross species amplification in other bamboos Afr J Biotech 4 2 151 156 1:CAS:528:DC%2BD2MXls1Gisbc%3D (Pubitemid 40632731)
29. S Nayak GR Rout P Das 2003 Evaluation of the genetic variability in bamboo using RAPD markers Plant Soil Environ 49 24 28 1:CAS:528: DC%2BD3sXivVCjtbs%3D (Pubitemid 36413197)
30. Rohlf FJ (1997) NTsys-PC: numerical taxonomy and multivariate analysis system, 2.02e. Exeter Software, New York
31. K Semagn A Bjornstad B Stedje E Bekele 2000 Comparision of multivariate methods for the analysis of genetic resources and adaptation in Phytolacca dodecandra using RAPD Theor Appl Genet 101 1145 1154 1:CAS:528: DC%2BD3cXovVaksL4%3D 10.1007/s001220051591
32. RK Sharma P Gupta V Sharma A Sood T Mohapatra PS Ahuja 2008 Evaluation of rice and sugarcane SSR markers for phylogenetic diversity analyses in bamboo Genome 51 91 103 1:CAS:528:DC%2BD1cXjtFyhu74%3D 10.1139/G07-101 18356943 (Pubitemid 351378206)
33. Sneath PHA, Sokal R (1973) Numerical taxonomy. Freeman, San Francisco, 34 pp
34. Soderstrom TR, Ellis RP (1987) The position of bamboo genera and allies in a system of grass classification. In: Hilu KW, Campbell CS, Barkworth ME (eds) Grass systematics and evolution (TR Soderstrom. Smithsonian Institution Press, Washington
35. Y Sun N Xia CMA Stapleton 2006 Relationships between Bambusa species (Poaceae, Bambusoideae) revealed by random amplified polymorphic DNA Biochem Syst Ecol 34 5 417 423 1:CAS:528:DC%2BD28XivFSisrY%3D 10.1016/j.bse.2005.10.015
36. Y Suyama K Obayashi I Hayashi 2000 Clonal structure in a dwarf bamboo (Sasa senanensis) population inferred from amplified fragment length polymorphism (AFLP) fingerprints Mol Ecol 9 901 906 1:STN:280: DC%2BD3M3pvFOgsQ%3D%3D 10.1046/j.1365-294x.2000.00943.x 10886653 (Pubitemid 30466707)
37. Wang DJ, Shen SJ (1987) Bamboos of China. Timber Press, Portland
38. Wong KM (1995) The bamboos of the peninsular Malaysia. Malaysia Forest Research Institute (FRIM), Kuala Lampur
39. MCY Wu 1962 Classification of Bambuseae based on leaf anatomy Bot Bull Acad Sin 3 83 107