Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data;Lilium cinsi Liriotypus seksiyonunun (Liliaceae) plastid ve çekirdek ribozomal DNA ITS dizi verilerine dayali moleküler filogenetigi ve ayrisma tarihlerinin hesaplanmasi

Turkish Journal of Botany

Volumn 35, Issue 4, 2011, Pages 319-330

  IkIncI, Nursel ^a  

^a ABANT IZZET BAYSAL UNIVERSITY   (Turkey)

Author keywords

ITS ribosomal DNA; Liliaceae; Lilium; Liriotypus; Phylogeny; Plastid DNA

Indexed keywords

BIOGEOGRAPHY; DNA; HERB; MOLECULAR ANALYSIS; MONOCOTYLEDON; PHYLOGENY; PLASTID;

AVES; LILIACEAE; LILIUM; LILIUM CILIATUM; LILIUM MONADELPHUM; LILIUM SZOVITSIANUM; MAGNOLIOPHYTA;

EID: 78549293999     PISSN: 1300008X     EISSN: 13036106     Source Type: Journal    
DOI: 10.3906/bot-1003-29     Document Type: Article

References (45)

1. Baker JG (1871). A new synopsis of all the known lilies. Gard Chron 28: 104.
2. Baranova MV (1985). Palynoderm ultrastructure and morphological types of pollen grains in the genus Lilium (Liliaceae). Bot Žurn 70: 297-304 (In Russian).
3. Baranova MV (1988). A synopsis of the system of the genus Lilium (Liliaceae). Bot Žurn 73: 1319-1329.
4. Bremer K (2000). Early Cretaceous lineages of monocot flowering plants. Proceed Nat Acad Sciences USA 97: 4707-4711.
5. Comber HF (1949). A new classification of the genus Lilium. Lily Year-Book 13: 86-105.
6. Davis PH & Henderson DM (1984). Lilium L. In: Davis PH (ed.) Flora of Turkey and the East Aegean Islands. Vol. 8, pp. 279-284, Edinburgh: Edinburgh University Press.
7. Demesure B, Sodzi N & Petit RJ (1995). A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Mol Ecol 4: 129-131.
8. Dizki{dotless}ri{dotless}ci{dotless} A, Kaya Z, Cabi E & Doǧan, M (2010). Phylogenetic relationships of Elymus L. and related genera (Poaceae) based on nuclear ribosomal internal transcribed spacer sequences. Turk J Bot 34: 467-478.
9. Doyle JJ & Doyle JS (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15.
10. Dubouzet JG & Shinoda K (1999). Phylogenetic analysis of the Internal Transcribed Spacer region of Japanese Lilium species. Theor Appl Genet 98: 954-960.
11. Duggen S, Hoernle K, Bogaard P, Rüpke L & Morgan JP (2003). Deep roots of the Messinian salinity crisis. Nature 422: 602-606.
12. Endlicher S (1836-1840). Genera Plantarum Secundum Ordines Naturales Disposita. Wien: Fr. Beck.
13. Ferns FEB (1978). Consider the lilies. Quarterly Bulletin of the Alpine Garden Society 46: 22-45.
14. Gandolfo MA, Nixon KC & Crepet WL (2000). Monocotyledons: a review of their Early Cretaceous record. In: Wilson KL & Morrison DA (eds.) Monocots: Systematics and Evolution, pp. 44-51. Melbourne: CSIRO Publishing.
15. Hall TA (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp Ser 41: 95-98.
16. Hayashi K & Kawano S (2000). Molecular Systematics of Lilium and allied genera (Liliaceae): phylogenetic relationships among Lilium and related genera based on the rbcL and matK gene sequence data. Pl Spec Biol 15: 73-93.
17. İkinci N & Oberprieler C (2010). Genetic relationships among NE Turkish Lilium L. (Liliaceae) species based on a Random Amplified Polymorphic DNA (RAPD) analysis. Pl Syst Evol 284: 41-48.
18. İkinci N, Oberprieler C & Güner A (2006). On the origin of European lilies: phylogenetic analysis of Lilium section Liriotypus using sequences of the nuclear ribosomal transcribed spacers. Willdenowia 36: 647-656.
19. İnceer H, Beyazoǧlu O & Hayi{dotless}rli{dotless}oǧlu-Ayaz S (1999). Karyotype analysis of some Lilium L. (Liliaceae) species from Turkey. Pak J Bot 31: 315-321.
20. İnceer H, Hayi{dotless}rli{dotless}oǧlu-Ayaz S & Beyazoǧlu O (2002). Karyological study on some taxa of the genus Lilium L. (Liliaceae). Pak J Bot 34: 33-40.
21. Jobb G, von Haeseler A & Strimmer K (2004). TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol 4: 18.
22. Kosenko VN (1999). Contributions to the pollen morphology and taxonomy of the Liliaceae. Grana 38: 20-30.
23. Kudriashova TL (1969). A comparative karyological investigation of Caucasian lilies. Bot Žurn 54: 1074-1082.
24. Lee C & Wen J (2004). Phylogeny of Panax using chloroplast trnC-trnD intergenic region and the utility of trnC-trnD in interspecific studies of plants. Mol Phyl Evol 31: 894-903.
25. Matthews VA (1980). Lilium L. In: Tutin TG, Heywood VH, Burges NA, Moore DM, Valentine DH, Walters SM & Webb DA (eds.) Flora Europaea, Vol. 5, pp. 34-35. Cambridge: Cambridge University Press.
26. Matthews VA (1989). Kew Gardening Guides: Lilies. Kew: The Royal Botanical Gardens.
27. McRae EA (1998). Lilies: A Guide for Growers and Collectors. Oregon: Timber Press.
28. Muratović E, Bogunić F, Šoljan D & Siljak-Yakovlev S (2005). Does Lilium bosniacum merit species rank? A classical and molecular-cytogenetic analysis. Pl Syst Evol 252: 97-109.
29. Muratović E, Robin O, Bogunić F, Šoljan D & Siljak-Yakovlev S (2010). Karyotype evolution and speciation of European lilies from Lilium sect. Liriotypus. Taxon 59: 165-175.
30. Nishikawa T, Okazaki K, Arakawa K & Nagamine T (2001). Phylogenetic analysis of section Sinomartagon in genus Lilium using sequences of the Internal Transcribed Spacer region in nuclear ribosomal DNA. Breed Sci 51: 39-46.
31. Nishikawa T, Okazaki K, Uchino T, Arakawa K & Nagamine T (1999). A molecular phylogeny of Lilium in the Internal Transcribed Spacer region of nuclear ribosomal DNA. J Mol Evol 49: 238-249.
32. Olteanu R & Jipa DC (2006). Dacian basin environmental evolution during Upper Neogene within the Paratethys domain. Geo-Eco-Marina, Coastal Zones and Deltas 12: 91-105.
33. Patterson TB & Givnish TJ (2002). Phylogeny, concerted convergence, and phylogenetic niche conservationism in the core Liliales: Insights from rbcL and ndhF sequence data. Evolution 56: 233-252.
34. Posada D & Crandall KA (1998). Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
35. Rešetnik I, Liber Z, Satovic Z, Cigić P & Nikolić T (2007). Molecular phylogeny and systematics of the Lilium carniolicum group (Liliaceae) based on nuclear ITS sequences. Pl Syst Evol 265: 45-58.
36. Rønsted N, Law S, Thornton H, Fay MF & Chase MW (2005). Molecular phylogenetic evidence for the monophyly of Fritillaria and Lilium (Liliaceae; Liliales) and the infrageneric classification of Fritillaria. Mol Phyl Evol 35: 509-527.
37. Sanderson MJ (1997). A nonparametric approach to estimating divergence times in the absence of rate constancy. Mol Biol Evol 14: 1218-1231.
38. Siljak-Yakovlev S, Peccenini S, Muratović E, Zoldos V, Robin O & Vallés J (2003). Chromosomal differentiation and genome size in the three European mountain Lilium species. Pl Syst Evol 236: 151-163.
39. Stewart RN (1947). The morphology of somatic chromosomes in Lilium. Am J Bot 34: 9-26.
40. Stoker F (1939). European lilies of the Isolirion section. Lily Year-Book 8: 15-29.
41. Swofford DL (2002). PAUP*: Phylogenetic Analysis Using Parsimony (*and other methods) version 4.1b10. Computer Program distributed by Sinauer Associates, Sunderland, MA.
42. Synge PM (1980). Lilies. A Revision of Elwes' Monograph of the Genus Lilium and its Supplements. London: B.T. Batsford Ltd.
43. Vinnersten A & Bremer K (2001). Age and biogeography of major clades in Liliales. Am J Bot 88: 1695-1703.
44. Wilson EH (1925). The Lilies of Eastern Asia, A Monograph. London: Dulau and Company Ltd.
45. Woodcock HBD & Stearn WT (1950) Lilies of the World, Their Cultivation and Classification. London: Country Life Limited.