SmashCell: A software framework for the analysis of single-cell amplified genome sequences

Bioinformatics

Volumn 26, Issue 23, 2010, Pages 2979-2980

  Harrington, Eoghan D ^a   Arumugam, Manimozhiyan ^b   Raes, Jeroen ^c   Bork, Peer ^b,d   Relman, David A ^a,e  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^c VRIJE UNIVERSITEIT BRUSSEL   (Belgium)

^d MAX DELBRÜCK CENTER FOR MOLECULAR MEDICINE   (Germany)

^e VA PALO ALTO HEALTH CARE SYSTEM   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CHROMOSOME MAP; COMPUTER PROGRAM; DNA SEQUENCE; GENOME; GENOMICS; METHODOLOGY; NUCLEIC ACID AMPLIFICATION; SINGLE CELL ANALYSIS;

ALGORITHMS; CHROMOSOME MAPPING; GENOME; GENOMICS; NUCLEIC ACID AMPLIFICATION TECHNIQUES; SEQUENCE ANALYSIS, DNA; SINGLE-CELL ANALYSIS; SOFTWARE;

EID: 78449299173     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq564     Document Type: Article

References (4)

1. Arumugam,M. et al. (2010) SmashCommunity: a metagenomic annotation and analysis tool. submitted
2. Jensen,L.J. et al. (2009) STRING 8-a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res., 37, D412-D416.
3. Marcy,Y. et al. (2007) Dissecting biological " dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc. Natl Acad. Sci. USA, 104, 11889-11894.
4. Woyke,T. et al. (2009) Assembling the marine metagenome, one cell at a time. PloS ONE, 4, e5299.