Comparison between genomic predictions using daughter yield deviation and conventional estimated breeding value as response variables

Journal of Animal Breeding and Genetics

Volumn 127, Issue 6, 2010, Pages 423-432

  Guo, G ^a,b   Lund, M S ^a   Zhang, Y ^b   Su, G ^a  

^a DANISH INSTITUTE OF AGRICULTURAL SCIENCES   (Denmark)

^b CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

Conventional estimated breeding value; Daughter yield deviation; Genomic prediction; Reliability; Response variable

Indexed keywords

ANALYSIS OF VARIANCE; ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; BREEDING; CATTLE; COMPARATIVE STUDY; COMPUTER SIMULATION; EPIDEMIOLOGY; EVALUATION; FEMALE; GENETICS; GENOMICS; LIVESTOCK; MALE; NONLINEAR SYSTEM; QUANTITATIVE TRAIT LOCUS; REPRODUCIBILITY; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL MODEL; STATISTICS; VALIDATION STUDY;

ANALYSIS OF VARIANCE; ANIMALS; BAYES THEOREM; BIAS (EPIDEMIOLOGY); BREEDING; CATTLE; COMPUTER SIMULATION; FEMALE; GENOMICS; LINEAR MODELS; LIVESTOCK; MALE; MODELS, GENETIC; NONLINEAR DYNAMICS; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT LOCI; REPRODUCIBILITY OF RESULTS;

HUMAN HERPESVIRUS 4;

EID: 78449270118     PISSN: 09312668     EISSN: 14390388     Source Type: Journal    
DOI: 10.1111/j.1439-0388.2010.00878.x     Document Type: Article

References (18)

1. Cole J.B., VanRaden P.M., O'Connell J.R., Van Tassell C.P., Sonstegard T.S., Schnabel R.D., Taylor J.F., Wiggans G.R. (2009) Distribution and location of genetic effects for dairy traits. J. Dairy Sci., 92, 2931-2946.
2. Garrick D.J., Taylor J.F., Fernando R.L. (2009) Deregressing estimated breeding values and weighting information for genomic regression analyses. Genet. Sel. Evol., 41, 55. doi:.
3. Harris B.L., Johnson D.L. (2010) Genomic predictions for New Zealand dairy bulls and integration with national genetic evaluation. J. Dairy Sci., 93, 1243-1252.
4. Hayes B.J., Bowman P.J., Chamberlain A.C., Verbyla K., Goddard M.E. (2009) Accuracy of genomic breeding values in multi-breed dairy cattle populations. Genet. Sel. Evol., 41, 51. doi:
5. Hazel L.N. (1943) The genetic basis for constructing selection indices. Genetics, 38, 476-490.
6. Hoeschele I., VanRaden P.M. (1993) Bayesian analysis of linkage between genetic markers and quantitative trait loci. II. Combining prior knowledge with experimental evidence. Theor. Appl. Genet., 85, 946-952.
7. Israel C., Weller J.I. (1998) Estimation of candidate gene effects in dairy cattle populations. J. Dairy Sci., 81, 1653-1662.
8. Israel C., Weller J.I. (2002) Estimation of quantitative trait loci effects in dairy cattle populations. J. Dairy Sci., 85, 1285-1297.
9. Jairath L., Dekkers J.C.M., Schaeffer L.R., Liu Z., Burnside E.B., Kolstad B. (1998) Genetic evaluation for herd life in Canada. J. Dairy Sci., 81, 550-562.
10. Lund M.S., Sahana G., De Koning D.-J., Su G., Carlborg Ö. (2009) Comparison of analysis of the QTLMAS XII common dataset. In: Proc. 12th European workshop on QTL mapping and marker assisted selection, Uppsala, Sweden. BMC Proceedings 2009, 3(Suppl. 1): s1.
11. Madsen P., Jensen J. (2007) DMU: A user's Guide. A Package for Analysing Multivariate Mixed Models. Version 6, Release 4.7. Accessed Nov. 15, 2007.
12. Meuwissen T.H.E., Hayes B.J., Goddard M.E. (2001) Prediction of total genetic value using genome-wide dense marker maps. Genetics, 157, 1819-1829.
13. NCBI (2005) National Center for Biotechnology Information, MGI genetic map of the mouse genome (Musmusculus), on 1 February 2005.
14. Rodriguez-Zas S.L., Southey B.R., Heyen D.W., Lewin H.A. (2002) Interval and composite interval mapping of somatic cell score, yield, and components of milk in dairy cattle. J. Dairy Sci., 85, 3081-3091.
15. Su G., Guldbrandtsen B., Gregersen V.R., Lund M.S. (2010) Preliminary investigation on reliability of genomic estimated breeding values in the Danish Holstein Population. J. Dairy Sci., 93, 1175-1183.
16. Van Raden P.M., Wiggans G.R. (1991) Derivation, calculation, and use of national animal model information. J. Dairy Sci., 74, 2737-2746.
17. VanRaden P.M. (2008) Efficient methods to Compute Genomic predictions. J. Dairy Sci., 91, 4414-4423.
18. VanRaden P.M., Van Tassell C.P., Wiggans G.R., Sonstegard T.S., Schnabel R.D., Taylor J.F., Schenkel F.S. (2009) Invited review: Reliability of genomic predictions for North American Holstein bulls. J. Dairy Sci., 92, 16-24.