Molecular characterization and phylogenetic analysis of VP1 of porcine enteric picornaviruses isolates in Italy

Transboundary and Emerging Diseases

Volumn 57, Issue 6, 2010, Pages 434-442

  Sozzi, E ^a   Barbieri, I ^a   Lavazza, A ^a   Lelli, D ^a   Moreno, A ^a   Canelli, E ^a   Bugnetti, M ^a   Cordioli, P ^a  

^a ISTITUTO ZOOPROFILATTICO SPERIMENTALE DELLA LOMBARDIA E DELL EMILIA ROMAGNA   (Italy)

Author keywords

Molecular characterization; Porcine enteric picornaviruses; RT PCR

Indexed keywords

BIOLOGICAL MARKER; CAPSID PROTEIN; PRIMER DNA;

ANIMAL; ANIMAL DISEASE; ARTICLE; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; ITALY; NUCLEIC ACID DATABASE; PHYLOGENY; PICORNAVIRUS; PICORNAVIRUS INFECTION; POLYMERASE CHAIN REACTION; SWINE; SWINE DISEASE; VIROLOGY;

ANIMALS; BIOLOGICAL MARKERS; CAPSID PROTEINS; DATABASES, NUCLEIC ACID; DNA PRIMERS; ITALY; PHYLOGENY; PICORNAVIRIDAE; PICORNAVIRIDAE INFECTIONS; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SWINE; SWINE DISEASES;

ENTEROVIRUS; MIRIDAE; PICORNAVIRIDAE; PORCINE TESCHOVIRUS; SUIDAE; SUS; TESCHOVIRUS;

EID: 78449260911     PISSN: 18651674     EISSN: 18651682     Source Type: Journal    
DOI: 10.1111/j.1865-1682.2010.01170.x     Document Type: Article

References (23)

1. Borrego, B., J. A. Garcia-Ranea, A. Douglas, and E. Brocchi, 2002: Mapping of linear epitopes on the capsid proteins of swine vesicular disease virus using monoclonal antibodies. J. Gen. Virol. 83, 1387-1395.
2. Brocchi, E., A. Berlinzani, D. Gamba, and F. De Simone, 1995: Development of two novel monoclonal antibody-based ELISAs for the detection of antibodies and the identification of swine isotypes against swine vesicular disease virus. J. Virol. Methods 52, 155-167.
3. Brocchi, E., G. Zhang, N. J. Knowles, G. Wilsden, J. W. McCauley, O. Marquardt, V. F. Ohlinger, and F. De Simone, 1997: Molecular epidemiology of recent outbreaks of swine vesicular disease: two genetically and antigenically distinct variants in Europe, 1987-1994. Epidemiol. Infect. 118, 51-61.
4. Caracappa, S., G. Vesco, G. Iannizzotto, V. Guercio, and N. J. Knowles, 1985: Isolamento ed identificazione di enterovirus suini in Sicilia. Arch. Vet. Ital. 36, 167-170.
5. Honda, E., A. Kimata, I. Hattori, T. Kumagai, T. Tsuda, and T. Tokui, 1990: A serological comparison of 4 japanese isolates of porcine enteroviruses with the international reference strains. Nippon Juigaku Zasshi 52, 49-54.
6. Jiménez-Clavero, M. A., C. Fernandez, J. A. Ortiz, J. Pro, G. Carbonell, J. V. Tarazona, N. Roblas, and V. Ley, 2003: Teschoviruses as indicators of porcine fecal contamination of surface water. Appl. Environ. Microbiol. 69, 6311-6315.
7. Kaku, Y., S. Yamada, and Y. Murakami, 1999: Sequence determination and phylogenetic analysis of RNA-dependent RNA polymerase (RdRp) of the porcine enterovirus 1 (PEV-1) Talfan strain. Arch. Virol. 144, 1845-1852.
8. Knowles, N. J., 2006: Porcine Enteric Picornaviruses in Diseases of Swine, 9th edn. 337-345 Wiley-Blackwell, Oxford, UK.
9. Knowles, N. J., L. S. Buckley, and H. G. Pereira, 1979: Classification of porcine enteroviruses by antigenic analysis and cytopathic effects in tissue culture: description of 3 new serotypes. Arch. Virol. 62, 201-208.
10. Krumbholz, A., M. Dauber, A. Henke, E. Birch-Hirschfeld, N. J. Knowles, A. Stelzner, and R. Zell, 2002: Sequencing of porcine enterovirus groups II and III reveals unique features of both virus groups. J. Virol. 76, 5813-5821.
11. Kumar, S., M. Nei, J. Dudley, and K. Tamura, 2008: MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 9, 299-306.
12. La Rosa, G., M. Muscillo, A. Di Grazia, S. Fontana, M. Iaconelli, and M. Tollis, 2006: Validation of RT-PCR assays for molecular characterization of porcine teschoviruses and enteroviruses. J. Vet. Med. B Infect. Dis. Vet. Public Health 53, 257-265.
13. Mateu, M. G., 1995: Antibody recognition of picornaviruses and escape from neutralization: a structural view. Virus Res. 38, 1-24.
14. Minor, P. D., and P. Muir, 2004: Principles and Practice of Clinical Virology. Wiley, Chichester.
15. Muscillo, M., A. Carducci, G. La Rosa, L. Cantiani, and C. Marianelli, 1997: Enteric virus detection in Adriatic seawater by cell culture, polymerase chain reaction and polyacrylamide gel electrophoresis. Water Res. 31, 1980-1984.
16. Nijihar, S., D. K. Mackay, E. Brocchi, N. P. Ferris, R. P. Kitching, and N. J. Knowles, 1999: Identification of neutralizing epitopes on a European strain of swine vesicular disease virus. J. Gen. Virol. 80, 277-282.
17. Oberste, M. S., K. Maher, and M. A. Pallansch, 2003: Genomic evidence that simian virus 2 and six other simian picornaviruses represent a new genus in Picornaviridae. Virology 314, 283-293.
18. Palmquist, J. M., S. Munir, A. Taku, V. Kapur, and S. M. Goyal, 2002: Detection of porcine teschovirus and enterovirus type II by reverse transcription-polymerase chain reaction. J. Vet. Diagn. Invest. 14, 476-480.
19. Paton, D., and E. Brocchi, 2008: Swine vesicular disease. In: OIE Standards Commission (ed.), Manual of Diagnostic Tests and Vaccines for Terrestrial Animals, 6th edn. pp. 1139-1145. Office International des Epizooties, Paris, France.
20. Stirk, H. J., and J. M. Thornton, 1994: The BC loop in poliovirus coat protein VP1: an ideal acceptor site for major insertions. Protein Eng. 7, 47-56.
21. Tseng, C. H., and H. J. Tsai, 2007: Sequence analysis of a duck picornavirus isolate indicates that it together with porcine enterovirus type 8 and simian picornavirus type 2 should be assigned to a new picornavirus genus. Virus Res. 129, 104-114.
22. Zell, R., A. Krumbholz, A. Henke, E. Birch-Hirschfeld, A. Stelzner, M. Doherty, E. Hoey, D. Prager, and R. Wurm, 2000: Detection of porcine enteroviruses by nRT-PCR: differentiation of CPE groups I-III with specific primer sets. J. Virol. Methods 88, 205-218.
23. Zell, R., M. Dauber, A. Krumbholz, A. Henke, E. Birch-Hirschfeld, A. Stelzner, D. Prager, and R. Wurm, 2001: Porcine teschoviruses comprise at least eleven distinct serotypes: molecular and evolutionary aspects. J. Virol. 75, 1620-1631.