Towards open science: The myExperiment approach

Concurrency and Computation: Practice and Experience

Volumn 22, Issue 17, 2010, Pages 2335-2353

  De Roure, David ^a   Goble, Carole ^b   Aleksejevs, Sergejs ^b   Bechhofer, Sean ^b   Bhagat, Jiten ^b   Cruickshank, Don ^a   Fisher, Paul ^b   Hull, Duncan ^b   Michaelides, Danius ^a   Newman, David ^a   Procter, Rob ^b   Lin, Yuwei ^b   Poschen, Meik ^b  

^a UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

^b UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

data curation research object; e laboratory; scientific workflow; semantic web; Web 2.0

Indexed keywords

COMPUTER APPLICATIONS; COMPUTER NETWORKS; CONCURRENCY CONTROL; SEMANTIC WEB;

CONTENT CURATION; METHODS AND PROCESS; RESEARCH OBJECT; SCIENTIFIC EXPERIMENTS; SCIENTIFIC WORKFLOWS; SOCIAL INFRASTRUCTURE; TOOLS AND APPLICATIONS; WEB 2.0;

DATA CURATION;

EID: 78349299854     PISSN: 15320626     EISSN: 15320634     Source Type: Journal    
DOI: 10.1002/cpe.1601     Document Type: Article

References (34)

1. Dirks L, Hey T, (eds). The coming revolution in scholarly communications and cyberinfrastructure. CTWatch Quarterly 2007; 3 (3).
2. Seekda. Available at: http://seekda.com/[visited 8 April 2009 ].
3. Anderson N, Tarczy-Hornoch P, Bumgarner R,. On the persistence of supplementary resources in biomedical publications. BMC Bioinformatics 2006; 7: 260.
4. Pearson H,. Online methods share insider tricks. Nature 2006; 441: 678 - 678.
5. Klimeck G, McLennan M, Brophy SP, Adams GB, Lundstrom MS,. nanoHUB.org: Advancing education and research in nanotechnology, Computing in Science and Engineering 2008; 10: 17 - 23.
6. Goble C, De Roure D,. Curating scientific web services and workflow. EDUCAUSE Review 2008; 43: 10 - 11.
7. Buckheit JB, Donoho DL,. WaveLab reproducible research. Technical Report, Department of Statistics, Stanford University, 1995.
8. Gil Y, Deelman E, Ellisman M, Fahringer T, Fox G, Gannon D, Goble C, Livny M, Moreau L, Myers J,. Examining the challenges of scientific workflows. Computer 2007; 40: 24 - 32.
9. Goderis A, Sattler U, Lord P, Goble C,. Seven bottlenecks to workflow reuse and repurposing. The Semantic Web-ISWC 2005, Galway, Ireland, 2005; 323 - 337.
10. Fisher P, Hedeler C, Wolstencroft K, Hulme H, Noyes H, Kemp S, Stevens R, Brass A,. A systematic strategy for large-scale analysis of genotype phenotype correlations: Identification of candidate genes involved in African trypanosomiasis. Nucleic Acids Research 2007; 35: 5625 - 5633.
11. Neylon C,. Science in the Open. Available at: http://blog.openwetware. org/scienceintheopen/ [visited April 8 2009 ].
12. Bradley J-C,. UsefulChem. Available at: http://usefulchem.blogspot.com/ [visited April 8 2009 ].
13. Tapscott D, Williams AD,. Wikinomics: How Mass Collaboration Changes Everything, Penguin Group (USA) Incorporated, 2008.
14. Shneiderman B,. Science 2.0. Science 2008; 319: 1349 - 1350.
15. De Roure D, Goble C,. Software design for empowering scientists. Software, IEEE 2009; 26: 88 - 95.
16. De Roure D, Goble C, Stevens R,. The design and realisation of the virtual research environment for social sharing of workflows. Future Generation Computer Systems 2009; 25: 561 - 567.
17. Oinn T, Greenwood M, Addis M, Alpdemir N, Ferris J, Glover K, Goble C, Goderis A, Hull D, Marvin D, Li P, Lord P, Pocock M, Senger M, Stevens R, Wipat A, Wroe C,. Taverna: Lessons in creating a workflow environment for the life sciences: Research Articles. Concurrency and Computation: Practice and Experience 2006; 18: 1067 - 1100.
18. McPhillips T, Bowers S, Zinn D, Ludäscher B,. Scientific workflow design for mere mortals. Future Generation Computer Systems 2009; 25: 541 - 551.
19. Taylor I, Shields M, Wang I, Harrison A,. The Triana workflow environment: Architecture and applications. Workflows for e-Science, 2007; 320 - 339.
20. Trident: Scientific workflow workbench for oceanography. Available at: http://www.microsoft.com/mscorp/tc/trident.mspx [visited April 8 2009 ].
21. Lin Y, Poschen M, Procter R, Voss A, Goble C, Bhagat J, De Roure D, Cruickshank D, Rouncefield M,. Lessons from developing a social networking site for scientists. e-Social Science '08, Manchester, U.K., 2008.
22. De Roure D, Goble C, Bhagat J, Cruickshank D, Goderis A, Michaelides D, Newman D,. myExperiment: Defining the social virtual research environment. Paper presented at the IEEE Fourth International Conference on eScience (eScience '08), Indianapolis, IN, U.S.A., 2008.
23. Williams AJ,. Internet-based tools for communication and collaboration in chemistry. Drug Discovery Today 2008; 13: 502 - 506.
24. Lin Y, Poschen M, Procter R, Voss A, Goble C, Bhagat J, De Roure D, Cruickshank D, Rouncefield M,. Agile management: Strategies for developing a social networking site for scientists. Fourth International Conference on e-Social Science, Manchester, U.K., 2008.
25. Bradley J-C,. Open Notebook Science Using Blogs and Wikis. Nature Precedings, 2007.
26. Piwowar HA, Chapman WW,. A review of journal policies for sharing research data. Nature Precedings, 2008.
27. Nielsen J,. Participation Inequality: Encouraging More Users to Contribute, 2006.
28. Groth PT, Gil Y,. A scientific workflow construction command line. Proceedings of the 13th International Conference on Intelligent User Interfaces. ACM: Sanibel Island, FL, U.S.A., 2009.
29. Biton O, Davidson SB, Khanna S, Roy S,. Optimizing user views for workflows. Proceedings of the 12th International Conference on Database Theory. ACM: St. Petersburg, Russia, 2009.
30. Goderis A, Fisher P, Gibson A, Tanoh F, Wolstencroft K, De Roure D, Goble C,. Benchmarking workflow discovery: A case study from bioinformatics. Concurrency and Computation: Practice and Experience 2009; 21 (16): 2052 - 2069. DOI: http://dx.doi.org/10.1002/cpe.v21:16.
31. Mons B,. Which gene did you mean? BMC Bioinformatics 2005; 6: 142.
32. Miller E,. An introduction to the resource description framework. D-Lib Magazine, 1998.
33. Williams R, Stewart J, Slack R,. Social Learning in Technological Innovation Experimenting With Information and Communication Technologies. Edward Elgar Publishing, Incorporated: 2005.
34. Glaser H, Jaffri A, Millard I,. Managing co-reference on the semantic web. Proceedings of the Linked Data on the Web Workshop (LDOW 2009), CEUR Workshop Proceedings, Madrid, Spain, 20 April 2009. ISSN: 1613-0073. Online:.