Transmembrane nine proteins in yeast and Arabidopsis affect cellular metal contents without changing vacuolar morphology

Physiologia Plantarum

Volumn 140, Issue 4, 2010, Pages 355-367

  Hegelund, Josefine N ^a   Jahn, Thomas P ^a   Baekgaard, Lone ^a   Palmgren, Michael G ^a   Schjoerring, Jan K ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN; COPPER; MANGANESE; MEMBRANE PROTEIN; METAL; NICKEL; SACCHAROMYCES CEREVISIAE PROTEIN;

ADAPTATION; ARABIDOPSIS; ARTICLE; CELL VACUOLE; CYTOLOGY; DRUG EFFECT; ENDOCYTOSIS; GENETICS; GROWTH, DEVELOPMENT AND AGING; HOMEOSTASIS; METABOLISM; MUTATION; PHENOTYPE; PHYLOGENY; PLANT ROOT; PROMOTER REGION; PROTEIN TRANSPORT; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY;

ADAPTATION, PHYSIOLOGICAL; ARABIDOPSIS; ARABIDOPSIS PROTEINS; COPPER; ENDOCYTOSIS; HOMEOSTASIS; MANGANESE; MEMBRANE PROTEINS; METALS; MUTATION; NICKEL; PHENOTYPE; PHYLOGENY; PLANT ROOTS; PROMOTER REGIONS, GENETIC; PROTEIN TRANSPORT; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; VACUOLES;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 78349260484     PISSN: 00319317     EISSN: 13993054     Source Type: Journal    
DOI: 10.1111/j.1399-3054.2010.01404.x     Document Type: Article

References (45)

1. Benghezal M, Cornillon S, Gebbie L, Alibaud L, Brückert F, Letourneur F, Cosson P (2003) Synergistic control of cellular adhesion by transmembrane 9 proteins. Mol Biol Cell 14: 2890-2899
2. Bergeret E, Perrin J, Williams M, Grunwald D, Engel E, Thevenon D, Taillebourg E, Bruckert F, Cosson P, Fauvarque M-O (2008) TM9SF4 is required for Drosophila cellular immunity via cell adhesion and phagocytosis. J Cell Sci 121: 3325-3334
3. Brachmann CB, Davies A, Cost GJ, Caputo E, Li J, Hieter P, Boeke JD (1998) Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14: 115-132
4. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254
5. Brandizzi F, Hanton S, Pinto daSilva LL, Boevink P, Evans D, Oparka K, Denecke J, Hawes C (2003) ER quality control can lead to retrograde transport from the ER lumen to the cytosol and the nucleoplasm in plants. Plant J 34: 269-281
6. Chang E, Kosman D (1989) Intracellular Mn (II)-associated superoxide scavenging activity protects Cu, Zn superoxide dismutase-deficient Saccharomyces cerevisiae against dioxygen stress. J Biol Chem 264: 12172-12178
7. Chluba-de Tapia J, De Tapia M, Jäggin V, Eberle AN (1997) Cloning of a human multispanning membrane protein cDNA: evidence for a new protein family. Gene 197: 195-204
8. Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743
9. Dashevskaya S, Kopito RB, Friedman R, Elbaum M, Epel BL (2008) Diffusion of anionic and neutral GFP derivatives through plasmodesmata in epidermal cells of Nicotiana benthamiana. Protoplasma 234: 13-23
10. Delis C, Dimou M, Flemetakis E, Aivalakis G, Katinakis P (2005) A root and hypocotyl-specific gene coding for copper-containing amine oxidase is related to cell expansion in soybean seedlings. J Exp Bot 57: 101-111
11. Dunkley TPJ, Hester S, Shadforth IP, Runions J, Weimar T, Hanton SL, Griffin JL, Bessant C, Brandizzi F, Hawes C, Watson RB, Dupree P, Lilley KS (2006) Mapping the Arabidopsis organelle proteome. Proc Natl Acad Sci USA 103: 6518-6523
12. Eide DJ, Clark S, Nair TM, Gehl M, Gribskov M, Guerinot ML, Harper JF (2005) Characterization of the yeast ionome: a genome-wide analysis of nutrient mineral and trace element homeostasis in Saccharomyces cerevisiae. Genome Biol 6: R77
13. Emanuelsson O, Brunak S, Von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protocols 2: 953-971
14. Froquet R, Cherix N, Birke R, Benghezal M, Cameroni E, Letourneur F, Mosch H-U, De Virgilio C, Cosson P (2008) Control of cellular physiology by TM9 proteins in yeast and Dictyostelium. J Biol Chem 283: 6764-6772
15. Guo Y, Smith K, Lee J, Thiele DJ, Petris MJ (2004) Identification of methionine-rich clusters that regulate copper-stimulated endocytosis of the human Ctr1 copper transporter. J Biol Chem 279: 17428-17433
16. Kassir Y, Simchen G (1991) Monitoring meiosis and sporulation in Saccharomyces cerevisiae. Methods Enzymol 194: 94-110
17. Kato N, Esaka M (2000) Expansion of transgenic tobacco protoplasts expressing pumpkin ascorbate oxidase is more rapid than that of wild-type protoplasts. Planta 210: 1018-1022
18. Kitamoto K, Yoshizawa K, Ohsumi Y, Anraku Y (1988) Dynamic aspects of vacuolar and cytosolic amino acid pools of Saccharomyces cerevisiae. J Bacteriol 170: 2683-2686
19. Krogh A, Larsson B, Von Heijne G, Sonnhammer ELL (2001) Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J Mol Biol 305: 567-580
20. Kwon C, Neu C, Pajonk S, Yun HS, Lipka U, Humphry M, Bau S, Straus M, Kwaaitaal M, Rampelt H, Kasmi FE, Jurgens G, Parker J, Panstruga R, Lipka V, Schulze-Lefert P (2008) Co-option of a default secretory pathway for plant immune responses. Nature 451: 835-840
21. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685
22. Lapinskas P, Cunningham K, Liu X, Fink G, Culotta V (1995) Mutations in PMR1 suppress oxidative damage in yeast cells lacking superoxide dismutase. Mol Cell Biol 15: 1382-1388
23. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) ClustalW and ClustalX version 2.0. Bioinformatics 23: 2947-2948
24. Li L, Chen OS, Ward DM, Kaplan J (2001) CCC1 is a transporter that mediates vacuolar iron storage in yeast. J Biol Chem 276: 29515-29519
25. Liu X, Culotta V (1994) The requirement for yeast superoxide dismutase is bypassed through mutations in BSD2, a novel metal homeostasis gene. Mol Cell Biol 14: 7037-7045
26. Liu H, Styles CA, Fink GR (1996) Saccharomyces cerevisiae S288C has a mutation in FLO8, a gene required for filamentous growth. Genetics 144: 967-978
27. Lo W-S, Dranginis AM (1998) The cell surface flocculin Flo11 Is required for pseudohyphae formation and invasion by Saccharomyces cerevisiae. Mol Biol Cell 9: 161-171
28. MacDiarmid CW, Gaither AL, Eide D (2000) Zinc transporters that regulate vacuolar zinc storage in Saccharomyces cerevisiae. EMBO J 19: 2845-2855
29. Pearce DA, Sherman F (1999) Toxicity of copper, cobalt, and nickel salts is dependent on histidine metabolism in the yeast Saccharomyces cerevisiae. J Bacteriol 181: 4774-4779
30. Puig S, Lee J, Lau M, Thiele DJ (2002) Biochemical and genetic analyses of yeast and human high affinity copper transporters suggest a conserved mechanism for copper uptake. J Biol Chem 277: 26021-26030
31. Raymond CK, Howald-Stevenson I, Vater CA, Stevens TH (1992) Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell 3: 1389-1402
32. Rees EM, Thiele DJ (2007) Identification of a vacuole-associated metalloreductase and its role in Ctr2-mediated intracellular copper mobilization. J Biol Chem 282: 21629-21638
33. Rupp S, Summers, E, Lo HJ, Madhani, H, Fink G (1999) MAP kinase and cAMP filamentation signaling pathways converge on the unusually large promoter of the yeast FLO11 gene. EMBO J 18: 1257-1269
34. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
35. Schimmöller F, Díaz E, Mühlbauer B, Pfeffer SR (1998) Characterization of a 76 kDa endosomal, multispanning membrane protein that is highly conserved throughout evolution. Gene 216: 311-318
36. Singer-Kruger B, Frank R, Crausaz F, Riezman H (1993) Partial purification and characterization of early and late endosomes from yeast. Identification of four novel proteins. J Biol Chem 268: 14376-14386
37. Sugasawa T, Lenzen G, Simon S, Hidaka J, Cahen A, Guillaume J-L, Camoin L, Strosberg AD, Nahmias C (2001) The iodocyanopindolol and SM-11044 binding protein belongs to the TM9SF multispanning membrane protein superfamily. Gene 273: 227-237
38. + channel and its recycling to the plasma membrane. Curr Biol 17: 1396-1402
39. Szczypka MS, Zhu Z, Silar P, Thiele DJ (1997) Saccharomyces cerevisiae mutants altered in vacuole function are defective in copper detoxification and iron-responsive gene transcription. Yeast 13: 1423-1435
40. Van Bakel H, Strengman E, Wijmenga C, Holstege FCP (2005) Gene expression profiling and phenotype analyses of S. cerevisiae in response to changing copper reveals six genes with new roles in copper and iron metabolism. Physiol Genomics 22: 356-367
41. Vida T, Emr S (1995) A new vital stain for visualizing vacuolar membrane dynamics and endocytosis in yeast. J Cell Biol 128: 779-792
42. +-ATPase in yeast endoplasmic reticulum. J Biol Chem 267: 12341-12349
43. Weisman LS (2003) Yeast vacuole inheritance and dynamics. Annu Rev Genet 37: 435-460
44. Yuan DS, Stearman R, Dancis A, Dunn T, Beeler T, Klausner RD (1995) The Menkes/Wilson disease gene homologue in yeast provides copper to a ceruloplasmin-like oxidase required for iron uptake. Proc Natl Acad Sci USA 92: 2632-2636
45. Yuan DS, Dancis A, Klausner RD (1997) Restriction of copper export in Saccharomyces cerevisiae to a late Golgi or post-Golgi compartment in the secretory pathway. J Biol Chem 272: 25787-25793