Engineering global regulator Hha of Escherichia coli to control biofilm dispersal

Microbial Biotechnology

Volumn 3, Issue 6, 2010, Pages 717-728

  Hong, Seok Hoon ^a   Lee, Jintae ^a   Wood, Thomas K ^a  

^a Texas AandM University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HEMOLYSIN; HIGH HEMOLYSIN ACTIVITY 13D6; HIGH HEMOLYSIN ACTIVITY 24E9; HIGH HEMOLYSIN ACTIVITY 72 AA; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; APOPTOSIS; ARTICLE; BIOFILM; CELL DEATH; CELL GROWTH; CYTOLYSIS; ESCHERICHIA COLI; MUTAGENESIS; NONHUMAN; PROTEIN VARIANT;

AMINO ACID SUBSTITUTION; BIOFILMS; DNA-BINDING PROTEINS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; MICROBIAL VIABILITY; MUTAGENESIS; MUTANT PROTEINS; MUTATION, MISSENSE; PROTEIN ENGINEERING;

ESCHERICHIA COLI;

EID: 78349252715     PISSN: 17517907     EISSN: 17517915     Source Type: Journal    
DOI: 10.1111/j.1751-7915.2010.00220.x     Document Type: Article

References (57)

1. Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: 0008.
2. Baños, R.C., Vivero, A., Aznar, S., García, J., Pons, M., Madrid, C., and, Juárez, A., (2009) Differential regulation of horizontally acquired and core genome genes by the bacterial modulator H-NS. PLoS Genet 5: e1000513.
3. Barraud, N., Storey, M.V., Moore, Z.P., Webb, J.S., Rice, S.A., and, Kjelleberg, S., (2009) Nitric oxide-mediated dispersal in single- and multi-species biofilms of clinically and industrially relevant microorganisms. Microb Biotechnol 2: 370 - 378.
4. Boles, B.R., and, Horswill, A.R., (2008) agr-mediated dispersal of Staphylococcus aureus biofilms. PLoS Pathog 4: e1000052.
5. Boles, B.R., Thoendel, M., and, Singh, P.K., (2005) Rhamnolipids mediate detachment of Pseudomonas aeruginosa from biofilms. Mol Microbiol 57: 1210 - 1223.
6. R cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. Gene 158: 9 - 14.
7. Christensen, S.K., Maenhaut-Michel, G., Mine, N., Gottesman, S., Gerdes, K., and, Melderen, L.V., (2004) Overproduction of the Lon protease triggers inhibition of translation in Escherichia coli: involvement of the yefM-yoeB toxin-antitoxin system. Mol Microbiol 51: 1705 - 1717.
8. Domka, J., Lee, J., Bansal, T., and, Wood, T.K., (2007) Temporal gene-expression in Escherichia coli K-12 biofilms. Environ Microbiol 9: 332 - 346.
9. Fishman, A., Tao, Y., Bentley, W.E., and, Wood, T.K., (2004) Protein engineering of toluene 4-monooxygenase of Pseudomonas mendocina KR1 for synthesizing 4-nitrocatechol from nitrobenzene. Biotechnol Bioeng 87: 779 - 790.
10. Fletcher, M., (1977) The effects of culture concentration and age, time, and temperature on bacterial attachment to polystyrene. Can J Microbiol 23: 1 - 6.
11. García, J., Cordeiro, T.N., Nieto, J.M., Pons, I., Juárez, A., and, Pons, M., (2005) Interaction between the bacterial nucleoid associated proteins Hha and H-NS involves a conformational change of Hha. Biochem J 388: 755 - 762.
12. García-Contreras, R., Zhang, X.-S., Kim, Y., and, Wood, T.K., (2008) Protein translation and cell death: the role of rare tRNAs in biofilm formation and in activating dormant phage killer genes. PLoS ONE 3: e2394.
13. Godessart, N., Muñoa, F.J., Regue, M., and, Juárez, A., (1988) Chromosomal mutations that increase the production of a plasmid-encoded haemolysin in Escherichia coli. J Gen Microbiol 134: 2779 - 2787.
14. González Barrios, A.F., Zuo, R., Hashimoto, Y., Yang, L., Bentley, W.E., and, Wood, T.K., (2006) Autoinducer 2 controls biofilm formation in Escherichia coli through a novel motility quorum-sensing regulator (MqsR, B3022). J Bacteriol 188: 305 - 316.
15. Hansen, M.C., Palmer, R.J., Jr, Udsen, C., White, D.C., and, Molin, S., (2001) Assessment of GFP fluorescence in cells of Streptococcus gordonii under conditions of low pH and low oxygen concentration. Microbiology 147: 1383 - 1391. (Pubitemid 32454655)
16. Heydorn, A., Nielsen, A.T., Hentzer, M., Sternberg, C., Givskov, M., Ersbøll, B.K., and, Molin, S., (2000) Quantification of biofilm structures by the novel computer program COMSTAT. Microbiology 146: 2395 - 2407.
17. Hong, S.H., Wang, X., and, Wood, T.K., (2010) Controlling biofilm formation, prophage excision and cell death by rewiring global regulator H-NS of Escherichia coli. Microb Biotechnol 3: 344 - 356.
18. Jain, R., and, Chan, M.K., (2007) Support for a potential role of E. coli oligopeptidase A in protein degradation. Biochem Biophys Res Commun 359: 486 - 490.
19. Kaplan, J.B., (2010) Biofilm dispersal: mechanisms, clinical implications, and potential therapeutic uses. J Dent Res 89: 205 - 218.
20. Karatan, E., and, Watnick, P., (2009) Signals, regulatory networks, and materials that build and break bacterial biofilms. Microbiol Mol Biol Rev 73: 310 - 347.
21. Kitagawa, M., Ara, T., Arifuzzaman, M., Ioka-Nakamichi, T., Inamoto, E., Toyonaga, H., and, Mori, H., (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res 12: 291 - 299.
22. Lee, J., Jayaraman, A., and, Wood, T., (2007a) Indole is an inter-species biofilm signal mediated by SdiA. BMC Microbiol 7: 42.
23. Lee, J., Bansal, T., Jayaraman, A., Bentley, W.E., and, Wood, T.K., (2007b) Enterohemorrhagic Escherichia coli biofilms are inhibited by 7-hydroxyindole and stimulated by isatin. Appl Environ Microbiol 73: 4100 - 4109.
24. Lee, J.W., Park, E., Bang, O., Eom, S.-H., Cheong, G.-W., Chung, C.H., and, Seol, J.H., (2007c) Nucleotide triphosphates inhibit the degradation of unfolded proteins by HslV peptidase. Mol Cells 23: 252 - 257.
25. Lee, J., Page, R., García-Contreras, R., Palermino, J.-M., Zhang, X.-S., Doshi, O., et al. (2007d) Structure and function of the Escherichia coli protein YmgB: a protein critical for biofilm formation and acid-resistance. J Mol Biol 373: 11 - 26.
26. Lee, J., Maeda, T., Hong, S.H., and, Wood, T.K., (2009) Reconfiguring the quorum-sensing regulator SdiA of Escherichia coli to control biofilm formation via indole and N-acylhomoserine lactones. Appl Environ Microbiol 75: 1703 - 1716.
27. Leungsakul, T., Johnson, G.R., and, Wood, T.K., (2006) Protein engineering of the 4-methyl-5-nitrocatechol monooxygenase from Burkholderia sp. strain DNT for enhanced degradation of nitroaromatics. Appl Environ Microbiol 72: 3933 - 3939.
28. Lu, T.K., and, Collins, J.J., (2007) Dispersing biofilms with engineered enzymatic bacteriophage. Proc Natl Acad Sci USA 104: 11197 - 11202.
29. Ma, Q., and, Wood, T.K., (2009) OmpA influences Escherichia coli biofilm formation by repressing cellulose production through the CpxRA two-component system. Environ Microbiol 11: 2735 - 2746.
30. Madrid, C., Nieto, J.M., Paytubi, S., Falconi, M., Gualerzi, C.O., and, Juárez, A., (2002) Temperature- and H-NS-dependent regulation of a plasmid-encoded virulence operon expressing Escherichia coli hemolysin. J Bacteriol 184: 5058 - 5066.
31. Madrid, C., Balsalobre, C., García, J., and, Juárez, A., (2007) The novel Hha/YmoA family of nucleoid-associated proteins: use of structural mimicry to modulate the activity of the H-NS family of proteins. Mol Microbiol 63: 7 - 14.
32. Maeda, T., Sanchez-Torres, V., and, Wood, T.K., (2008) Metabolic engineering to enhance bacterial hydrogen production. Microb Biotechnol 1: 30 - 39.
33. Mai-Prochnow, A., Webb, J.S., Ferrari, B.C., and, Kjelleberg, S., (2006) Ecological advantages of autolysis during the development and dispersal of Pseudoalteromonas tunicata biofilms. Appl Environ Microbiol 72: 5414 - 5420.
34. Méndez-Ortiz, M.M., Hyodo, M., Hayakawa, Y., and, Membrillo-Hernández, J., (2006) Genome-wide transcriptional profile of Escherichia coli in response to high levels of the second messenger 3′,5′-cyclic diguanylic acid. J Biol Chem 281: 8090 - 8099.
35. Mogk, A., Deuerling, E., Vorderwülbecke, S., Vierling, E., and, Bukau, B., (2003) Small heat shock proteins, ClpB and the DnaK system form a functional triad in reversing protein aggregation. Mol Microbiol 50: 585 - 595.
36. Mogk, A., Haslberger, T., Tessarz, P., and, Bukau, B., (2008) Common and specific mechanisms of AAA+ proteins involved in protein quality control. Biochem Soc Trans 36: 120 - 125.
37. Prüß, B.M., Besemann, C., Denton, A., and, Wolfe, A.J., (2006) A complex transcription network controls the early stages of biofilm development by Escherichia coli. J Bacteriol 188: 3731 - 3739.
38. Rasouly, A., and, Ron, E.Z., (2009) Interplay between the heat shock response and translation in Escherichia coli. Res Microbiol 160: 288 - 296.
39. Ren, D., Bedzyk, L.A., Thomas, S.M., Ye, R.W., and, Wood, T.K., (2004a) Gene expression in Escherichia coli biofilms. Appl Microbiol Biotechnol 64: 515 - 524.
40. Ren, D., Bedzyk, L.A., Ye, R.W., Thomas, S.M., and, Wood, T.K., (2004b) Differential gene expression shows natural brominated furanones interfere with the autoinducer-2 bacterial signaling system of Escherichia coli. Biotechnol Bioeng 88: 630 - 642.
41. Rui, L., Kwon, Y.M., Fishman, A., Reardon, K.F., and, Wood, T.K., (2004) Saturation mutagenesis of toluene ortho-monooxygenase of Burkholderia cepacia G4 for enhanced 1-naphthol synthesis and chloroform degradation. Appl Environ Microbiol 70: 3246 - 3252.
42. Sambrook, J., Fritsch, E.F., and, Maniatis, T., (1989) Molecular Cloning, A Laboratory Manual. Cold Spring Harbor, NY, USA: Cold Spring Harbor Laboratory Press.
43. Sauer, K., Cullen, M.C., Rickard, A.H., Zeef, L.A.H., Davies, D.G., and, Gilbert, P., (2004) Characterization of nutrient-induced dispersion in Pseudomonas aeruginosa PAO1 biofilm. J Bacteriol 186: 7312 - 7326.
44. Sayed, A.K., Odom, C., and, Foster, J.W., (2007) The Escherichia coli AraC-family regulators GadX and GadW activate gadE, the central activator of glutamate-dependent acid resistance. Microbiology 153: 2584 - 2592.
45. Schmidt, R., Bukau, B., and, Mogk, A., (2009) Principles of general and regulatory proteolysis by AAA+ proteases in Escherichia coli. Res Microbiol 160: 629 - 636.
46. Schwede, T., Kopp, J., Guex, N., and, Peitsch, M.C., (2003) SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res 31: 3381 - 3385.
47. Sharma, V.K., Carlson, S.A., and, Casey, T.A., (2005) Hyperadherence of an hha mutant of Escherichia coli O157:H7 is correlated with enhanced expression of LEE-encoded adherence genes. FEMS Microbiol Lett 243: 189 - 196.
48. Singh, R., Paul, D., and, Jain, R.K., (2006) Biofilms: implications in bioremediation. Trends Microbiol 14: 389 - 397.
49. Smith, P.A., and, Romesberg, F.E., (2007) Combating bacteria and drug resistance by inhibiting mechanisms of persistence and adaptation. Nat Chem Biol 3: 549 - 556.
50. Stewart, P.S., and, Franklin, M.J., (2008) Physiological heterogeneity in biofilms. Nat Rev Microbiol 6: 199 - 210.
51. Steyn, B., Oosthuizen, M.C., MacDonald, R., Theron, J., and, Brözel, V.S., (2001) The use of glass wool as an attachment surface for studying phenotypic changes in Pseudomonas aeruginosa biofilms by two-dimensional gel electrophoresis. Proteomics 1: 871 - 879.
52. Ueda, A., and, Wood, T.K., (2009) Connecting quorum sensing, c-di-GMP, Pel polysaccharide, and biofilm formation in Pseudomonas aeruginosa through tyrosine phosphatase TpbA (PA3885). PLoS Pathog 5: e1000483.
53. Wang, X., Kim, Y., and, Wood, T.K., (2009) Control and benefits of CP4-57 prophage excision in Escherichia coli biofilms. ISME J 3: 1164 - 1179.
54. Webb, J.S., Thompson, L.S., James, S., Charlton, T., Tolker-Nielsen, T., Koch, B., et al. (2003) Cell death in Pseudomonas aeruginosa biofilm development. J Bacteriol 185: 4585 - 4592.
55. Woo, K.M., Kim, K.I., Goldberg, A.L., Ha, D.B., and, Chung, C.H., (1992) The heat-shock protein ClpB in Escherichia coli is a protein-activated ATPase. J Biol Chem 267: 20429 - 20434.
56. Wood, T.K., (2009) Insights on Escherichia coli biofilm formation and inhibition from whole-transcriptome profiling. Environ Microbiol 11: 1 - 15.
57. Yee, A., Chang, X., Pineda-Lucena, A., Wu, B., Semesi, A., Le, B., et al. (2002) An NMR approach to structural proteomics. Proc Natl Acad Sci USA 99: 1825 - 1830.