Identification of candidate genes important for frost tolerance in Festuca pratensis Huds. by transcriptional profiling

Plant Science

Volumn 180, Issue 1, 2011, Pages 78-85

  Rudi, Heidi ^a   Sandve, Simen R ^a   Opseth, Lars M ^a   Larsen, Arild ^b   Rognli, Odd Arne ^a  

^a NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

^b Graminor AS   (Norway)

Author keywords

Cold acclimation; Expressed sequence tags; Festuca pratensis; Frost tolerance; Perennial ryegrass; Winter survival

Indexed keywords

ARTICLE; COLD; EXPRESSED SEQUENCE TAG; FESCUE; GENE EXPRESSION REGULATION; GENETICS; PHYSIOLOGY;

COLD TEMPERATURE; EXPRESSED SEQUENCE TAGS; FESTUCA; GENE EXPRESSION REGULATION, PLANT;

FESTUCA PRATENSIS; LOLIUM PERENNE; POACEAE;

EID: 78149498878     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2010.07.014     Document Type: Article

References (65)

1. Thomashow M.F. Plant cold acclimation: freezing tolerance genes and regulatory mechanisms. Annu. Rev. Plant. Phys. 1999, 50:571-599.
2. Li P.H. Subzero temperature stress physiology of herbaceous plants. Hort. Rev. 1984, 6:373-416.
3. Fowler S., Thomashow M.F. Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell 2002, 14:1675-1690.
4. Kreps J.A., Wu Y., Chang H.S., Zhu T., Wang X., Harper J.F. Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiol. 2002, 130:2129-2141.
5. Herman E.M, Rotter K., Premakumar R., Elwinger G., Bae H., Ehler-King L., Chen S., Livingston D.P. Additional freeze hardiness in wheat acquired by exposure to -3 degrees is associated with extensive physiological, morphological, and molecular changes. J. Exp. Bot. 2006, 57:3601-3618.
6. Svensson J.T., Crosatti C., Campoli C., Bassi R., Stanca A.M., Close T.J., Cattivelli L. Transcriptome analysis of cold acclimation in barley albina and xantha mutants. Plant Physiol. 2006, 141:257-270.
7. Winfield M.O., Lu C., Wilson I.D., Coghill J.A., Edwards K.J. Plant responses to cold: transcriptome analysis of wheat. Plant Biotechnol. J. 2010, 1-23.
8. Zhang J.Z., Creelman R.A., Zhu J.K. From laboratory to field. Using information from Arabidopsis to engineer salt, cold, and drought tolerance in crops. Plant Physiol. 2004, 135:615-621.
9. Chinnusamy V., Schumaker K., Zhu J.K. Molecular genetic perspectives on cross-talk and specificity in abiotic stress signalling in plants. J. Exp. Bot. 2004, 55:225-236.
10. Nakashima K., Ito Y., Yamaguchi-Shinozaki K. Transcriptional regulatory networks in response to abiotic stresses in Arabidopsis and grasses. Plant Physiol. 2009, 149:88-95.
11. Sawbridge T., Ong E.-K., Binnion C., Emmerling M., McInnes R., Meath K., Nguyen N., O'Neill M., O'Toole F., Rhodes C., Simmonds J., Tian P., Wearne K., Webster T., Winkworth A., Spangenberg G. Generation and analysis of expressed sequence tags in perennial ryegrass (Lolium perenne L.). Plant Sci. 2003, 165:1089-1100.
12. Zhang C., Fei S.Z., Warnke S., Li L., Hannapel D. Identification of genes associated with cold acclimation in perennial ryegrass. J. Plant Physiol. 2009, 166:1436-1445.
13. Xiong Y.W., Fei S.Z., Arora R., Brummer E.C., Barker R.E., Jung G.W., Warnke S.E. Identification of quantitative trait loci controlling winter hardiness in an annual x perennial ryegrass interspecific hybrid population. Mol. Breeding 2007, 19:125-136.
14. Yamada T., Jones E.S., Cogan N.O.I., Vecchies A.C., Nomura T., Hisano H., Shimamoto Y., Smith K.F., Hayward M.D., Forster J.W. QTL analysis of morphological, developmental, and winter hardiness-associated traits in perennial ryegrass. Crop Sci. 2004, 44:925-935.
15. Fricano A, Rizza F., Faccioli P., Pagani D., Pavan P., Stella A., Rossini L., Piffanelli P., Cattivelli L. Genetic variants of HvCbf14 are statistically associated with frost tolerance in a European germplasm collection of Hordeum vulgare. Theor. Appl. Genet. 2009, 119:1335-1348.
16. Sutton F., Chen D.G., Ge X., Kenefick D. Cbf genes of the Fr-A2 allele are differentially regulated between long-term cold acclimated crown tissue of freeze-resistant and-susceptible, winter wheat mutant lines. BMC Plant Biol. 2009, 9:34.
17. Hoekstra H.E, Coyne J.A. The locus of evolution: evo devo and the genetics of adaptation. Evolution 2007, 61:995-1016.
18. Shapiro M.D., Marks M.E., Peichel C.L., Blackman B.K., Nereng K.S., Jonsson B., Schluter D., Kingsley D.M. Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks. Nature 2004, 428:717-723.
19. Wray G.A. The evolutionary significance of cis-regulatory mutations. Nat. Rev. Genet. 2007, 8:206-216.
20. Alm V., Fang C., Busso C.S., Devos K.M., Vollan K., Grieg Z., Rognli O.A. A linkage map of meadow fescue (Festuca pratensis Huds.) and comparative mapping with other Poaceae species. Theor. Appl. Genet. 2003, 108:25-40.
21. Larsen A. Freezing tolerance in grasses. Methods for testing in controlled environments. Meld Norg Landbr Høgsk 1978, 57:1-56.
22. Diatchenko L., Lau Y-F.C., Campbell A.P., Chenchik A., Moqadam F., Huang B., Lukyanov S., Lukyanov K., Gurskaya N., Sverdlov E.D., Siebert P.D. Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc. Natl. Acad. Sci. U.S.A. 1996, 93:6025-6030.
23. Lübberstedt T A.B., Holm P.B. Development of ryegrass allele-specific (grasp) markers for sustainable grassland improvement-a new EU Framework V Project. Czech J. Genet. Plant Breed 2003, 39:125-128.
24. Aharoni A., Keizer P.L.C., Bouwmeester H.J., Sun Z., Alvarez-Huerta M., Verhoeven H.A., Blaas J., van Houwelingen A.M.M.L., De Vos R.C.H., van der Voet H., Jansen R.C., Guis M., Mol J., Davis R.W., Schena M., van Tunen A.J., O'Connell A.P. Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays. Plant Cell 2000, 12:647-662.
25. de la Bastide M., McCombie W.R. Assembling genomic DNA sequences with PHRAP. Current Protocols in Bioinformatics 2007, John Wiley.
26. Ewing B, Hillier L., Wendl M.C., Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998, 8:175-185.
27. Gordon D., Abajian C., Green P. Consed: a graphical tool for sequence finishing. Genome Res. 1998, 8:195-202.
28. Donnison I.S., O'Sullivan D.M., Thomas A., Canter P., Moore B., Armstead I., Thomas H., Edwards K.J., King I.P. Construction of a Festuca pratensis BAC library for map-based cloning in Festulolium substitution lines. Theor. Appl. Genet. 2005, 110:846-851.
29. Nishimura M., Kaminishi T., Takemoto C., Kawazoe M., Yoshida T., Tanaka A., Sugano S., Shirouzu M., Ohkubo T., Yokoyama S., Kobayashi Y. Crystal structure of human ribosomal protein L10 core domain reveals eukaryote-specific motifs in addition to the conserved fold. J. Mol. Biol. 2008, 377:421-430.
30. Brautigam M., Lindlof A., Zakhrabekova S., Gharti-Chhetri G., Olsson B., Olsson O. Generation and analysis of 9792 EST sequences from cold acclimated oat, Avena sativa. BMC Plant Biol. 2005, 5. 10.1186/1471-2229-1185-1118.
31. Houde M., Belcaid M., Ouellet F., Danyluk J., Monroy A.F., Dryanova A., Gulick P., Bergeron A., Laroche A., Links M.G., MacCarthy L., Crosby W.L., Sarhan F. Wheat EST resources for functional genomics of abiotic stress. BMC Genomics 2006, 7/149. 10.1186/1471-2164-1187-1149.
32. Monroy A.F., Dryanova A., Malette B., Oren D.H., Farajalla M.R., Liu W., Danyluk J., Ubayasena L.W.C., Kane K., Scoles G.J., Sarhan F., Gulick P.J. Regulatory gene candidates and gene expression analysis of cold acclimation in winter and spring wheat. Plant Mol. Biol. 2007, 64:409-423.
33. Vogel J.T., Zarka D.G., Van Buskirk H.A., Fowler S.G., Thomashow M.F. Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis. Plant J. 2005, 41:195-211.
34. Lee B.H., Henderson D.A., Zhu J.K. The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. Plant Cell 2005, 17:3155-3175.
35. Sandve S., Rudi H., Asp T., Rognli O. Tracking the evolution of a cold stress associated gene family in cold tolerant grasses. BMC Evol. Biol. 2008, 8:245.
36. Sidebottom C., Buckley S., Pudney P., Twigg S., Jarman C., Holt C., Telford J., McArthur A., Worrall D., Hubbard R., Lillford P. Phytochemistry: heat-stable antifreeze protein from grass. Nature 2000, 406:256.
37. Zhang C., Fei S.-Z., Arora R., Hannapel D. Ice recrystallization inhibition proteins of perennial ryegrass enhance freezing tolerance. Planta 2010, 232:155-164.
38. Lee H., Xiong L., Ishitani M., Stevenson B., Zhu J.K. Cold-regulated gene expression and freezing tolerance in an Arabidopsis thaliana mutant. Plant J. 1999, 17:301-308.
39. Pritchard J.K., Pickrell J.K., Coop G. The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation. Curr. Biol. 2010, 20:R208-R215.
40. Sørensen J.G, Nielsen M.M., Loeschcke V. Gene expression profile analysis of Drosophila melanogaster selected for resistance to environmental stressors. J. Evol. Biol. 2007, 20:1624-1636.
41. Oh H.S., Kwon H., Sun H.K., Yang C.H. QM, a putative tumor suppressor, regulates proto-oncogene c-Yes. J. Biol. Chem. 2002, 277:36489-36498.
42. Monteclaro F.S, Vogt P.K. A Jun-Binding protein related to a putative tumor-suppressor. Proc. Natl. Acad. Sci. U.S.A. 1993, 90:6726-6730.
43. Farmer A.A., Loftus T.M., Mills A.A., Sato K.Y., Neill J.D., Tron T., Yang M., Trumpower B.L., Stanbridge E.J. Extreme evolutionary conservation of QM, a novel c-Jun associated transcription factor. Hum. Mol. Genet. 1994, 3:723-728.
44. Loftus T.M., Nguyen Y.H., Stanbridge E.J. The QM protein associates with ribosomes in the rough endoplasmic reticulum. Biochemistry 1997, 36:8224-8230.
45. Lillico S.G., Mottram J.C., Murphy N.B., Welburn S.C. Characterisation of the QM gene of Trypanosoma brucei. FEMS Microbiol. Lett. 2002, 211:123-128.
46. Wen Y., Shao J.-Z., Pan X.-X., Xiang L.-X. Molecular cloning, characterization and expression analysis of QM gene from grass carp (Ctenopharyngodon idellus) homologous to Wilms' tumor suppressor. Comp. Biochem. Physiol. B: Biochem. Mol. Biol. 2005, 141:356-365.
47. Xio-Chun G.E, Hui Z., Shu-Xuan Z., Ji-Chao C., Chong-Rong S., Kai-Ming C. Cloning and expression analysis of a human putative tumor suppressor gene homologue from rice. Acta. Bot. Sin. 2002, 44:562-566.
48. Bhardwaj P.K., Ahuha P.S., Kumar S. Characterization of gene expression of QM from Caragana jubata, a plant species that grows under extreme cold. Mol. Biol. Rep. 2010, 37:1003-1010.
49. Chen C., Wanduragala S., Becker D.F., Dickman M.B. Tomato QM-like protein protects saccharomyces cerevisiae cells against oxidative stress by regulating intracellular proline levels. Appl. Environ. Microbiol. 2006, 72:4001-4006.
50. Warner J.R., McIntosh K.B. How common are extra-ribosomal functions of ribosomal proteins?. Mol. Cell 2009, 34:3-11.
51. Walters R.G., Ibrahim D.G., Horton P., Kruger N.J. A mutant of arabidopsis lacking the triose-phosphate/phosphate translocator reveals metabolic regulation of starch breakdown in the light. Plant Physiol. 2004, 135:891-906.
52. Klotke J., Kopka J., Gatzke N., Heyer A.G. Impact of soluble sugar concentrations on the acquisition of freezing tolerance in accessions of Arabidopsis thaliana with contrasting cold adaptation-evidence for a role of raffinose in cold acclimation. Plant Cell Environ. 2004, 27:1395-1404.
53. Strand A., Foyer C.H., Gustafsson P., Gardestrom P., Hurry V. Altering flux through the sucrose biosynthesis pathway in transgenic Arabidopsis thaliana modifies photosynthetic acclimation at low temperatures and the development of freezing tolerance. Plant Cell Environ. 2003, 26:523-535.
54. Bravo L.A., Baschunan-Godoy L., Perez-Torres E., Corcuera L.J. Cold hardiness in antarctic vascular plants in; Plant cold hardiness from laboratory to the field. ISBN-13: 978-1-84593-513-9 2009, 198-213.
55. Levitt J. Responses of Plants to Environmental Stresses 1980, 1. Academic Press, New York.
56. Santarius K.A. Freezing of isolated thylakoid membranes in complex media. VIII. Differential cryoprotection by sucrose, proline and glycerol. Physiol. Plant. 1992, 84:87-93.
57. Crowe J.H., Crowe L.M., Carpenter J.F., Rudolph A.S., Wistrom C.A., Spargo B.J., Anchordoguy T.J. Interactions of sugars with membranes. BBA-Rev Biomembranes 1988, 947:367-384.
58. Caffrey M., Fonseca V., Leopold A.C. Lipid-sugar interactions: relevance to anhydrous biology. Plant Physiol. 1988, 86:754-758.
59. Anchordoguy T.J., Rudolph A.S., Carpenter J.F., Crowe J.H. Modes of interaction of cryoprotectants with membrane phospholipids during freezing. Cryobiology 1987, 24:324-331.
60. Carpenter J.F., Crowe J.H. The mechanism of cryoprotection of proteins by solutes. Cryobiology 1988, 25:244-255.
61. Parvanova D., Popova A., Zaharieva I., Lambrev P., Konstantinova T., Taneva S., Atanassov A., Goltsev V., Djilianov D. Low temperature tolerance of tobacco plants transformed to accumulate proline, fructans, or glycine betaine. Variable chlorophyll fluorescence evidence. Photosynthetica 2004, 42:179-185.
62. Li H.J., Yang A.F., Zhang X.C., Gao F., Zhang J.R. Improving freezing tolerance of transgenic tobacco expressing-sucrose: sucrose 1-fructosyltransferase gene from Lactuca sativa. Plant Cell Tiss. Org. 2007, 89:37-48.
63. Kawakami A., Sato Y., Yoshida M. Genetic engineering of rice capable of synthesizing fructans and enhancing chilling tolerance. J. Exp. Bot. 2008, 59:793-802.
64. Hisano H., Kanazawa A., Kawakami A., Yoshida M., Shimamoto Y., Yamada T. Transgenic perennial ryegrass plants expressing wheat fructosyltransferase genes accumulate increased amounts of fructan and acquire increased tolerance on a cellular level to freezing. Plant Sci. 2004, 167:861-868.
65. Livingston D., Hincha D., Heyer A. Fructan and its relationship to abiotic stress tolerance in plants. Cell. Mol. Life Sci. 2009, 66:2007-2023.