Live cell segmentation in fluorescence microscopy via graph cut

Proceedings - International Conference on Pattern Recognition

Volumn , Issue , 2010, Pages 1485-1488

  Leskó, Milán ^a   Kato, Zoltan ^a   Nagy, Antal ^a   Gombos, Imre ^b   Török, Zsolt ^b   Vígh Jr , László ^b   Vígh, László ^b  

^a UNIVERSITY OF SZEGED   (Hungary)

^b INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

Author keywords

[No Author keywords available]

Indexed keywords

EDGE INFORMATION; ENERGY MINIMA; FLUORESCENCE MICROSCOPIC IMAGES; GRAPH CUT; LIVE CELL; MARKOVIAN SEGMENTATION; PAIRWISE INTERACTION; SUBMODULAR; SYNTHETIC IMAGES;

FLUORESCENCE; FLUORESCENCE MICROSCOPY;

PATTERN RECOGNITION;

EID: 78149486419     PISSN: 10514651     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICPR.2010.367     Document Type: Conference Paper

References (11)

1. S. Raman, B. Parvin, C. Maxwell, and M. H. Barcellos-Ho, "Geometric approach to segmentation and protein localization in cell cultured assays," in Advances in Visual Computing, Nov. 2005, pp. 427-436.
2. n Potts model with learning methods to segment live cell images," in International Conference on Computer Vision. IEEE, Oct. 2007, pp. 1-8.
3. C. Chen, H. Li, X. Zhou, and S. T. C. Wong, "Constraint factor graph cutbased active contour method for automated cellular image segmentation in RNAi screening," Journal of Microscopy, vol. 230, no. 2, pp. 177-191, May 2008.
4. T. R. Jones, I. H. Kang, D. B. Wheeler, R. A. Lindquist, A. Papallo, D. M. Sabatini, P. Golland, and A. E. Carpenter, "Cellprofiler analyst: data exploration and analysis software for complex image-based screens," BMC Bioinformatics, vol. 9, no. 1, p. 482, Nov. 2008.
5. S. Geman and D. Geman, "Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images," IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 6, no. 6, pp. 721-741, Nov. 1984.
6. V. Kolmogorov and R. Zabih, "What energy functions can be minimized via graph cuts?" IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 26, no. 2, pp. 147-159, Feb. 2004.
7. Y. Boykov and V. Kolmogorov, "An experimental comparison of min-cut/max-flow algorithms for energy minimization in vision," IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 26, no. 9, pp. 1124-1137, Sept. 2004.
8. A. Blake, C. Rother, M. Brown, P. Perez, and P. Torr, "Interactive image segmentation using an adaptive GMMRF model," in European Conference on Computer Vision, ser. LNCS, T. Pajdla and J. Matas, Eds., vol. 3021, 2004, pp. 428-441.
9. Y. Boykov and M.-P. Jolly, "Interactive graph cuts for optimal boundary & region segmentation of objects in N-D images," in International Conference on Computer Vision, vol. 1, July 2001, pp. 105-112.
10. K. Fish, "Total internal reflection fluorescence (TIRF) microscopy." Curr Protoc Cytom, vol. Chapter 12, 2009.
11. E. Nagy, Z. Balogi, I. Gombos, M. Akerfelt, A. Bjorkbom, G. Balogh, Z. Torok, A. Maslyanko, A. Fiszer-Kierzkowska, K. Lisowska, P. Slotte, L. Sistonen, I. Horvath, and L. Vigh, "Hyperfluidization-coupled membrane microdomain reorganization is linked to activation of the heat shock response in a murine melanoma cell line," in Proc. Natl. Acad. Sci. USA, vol. 104, 2007, pp. 7945-7950.