Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs

BMC Bioinformatics

Volumn 11, Issue , 2010, Pages

  Kundeti, Vamsi K ^a   Rajasekaran, Sanguthevar ^a   Dinh, Hieu ^a   Vaughn, Matthew ^b   Thapar, Vishal ^c  

^a University of Connecticut   (United States)

^b UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^c Howard Hughes Medical Institute Cold Spring Harbor Laboratory Cold Spring Harbor   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALL-TO-ALL COMMUNICATION; ASSEMBLY PROBLEMS; COMMUNICATION COMPLEXITY; COMPUTATIONAL BIOLOGY; EULERIAN APPROACH; GRAPH CONSTRUCTION; OUT-OF-CORE ALGORITHMS; SEQUENCE ASSEMBLIES;

BIOINFORMATICS; DATA STRUCTURES; PARALLEL ALGORITHMS; PARALLEL ARCHITECTURES; SCALABILITY; SILK;

INTERCONNECTION NETWORKS;

ALGORITHM; ARTICLE; BIOLOGY; DNA SEQUENCE; GENOME; METHODOLOGY; NUCLEOTIDE SEQUENCE;

ALGORITHMS; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; GENOME; SEQUENCE ANALYSIS, DNA;

EID: 78149461474     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-11-560     Document Type: Article

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