메뉴 건너뛰기




Volumn 5, Issue 10, 2010, Pages

Ecology driving genetic variation: A comparative phylogeography of jungle cat (Felis chaus) and leopard cat (Prionailurus bengalensis) in India

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME B; MITOCHONDRIAL DNA; PRIMER DNA;

EID: 78149444060     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0013724     Document Type: Article
Times cited : (44)

References (65)
  • 1
    • 0023496815 scopus 로고
    • Intraspecific phylogeography-the mitochondrial DNA bridge between population genetics and systematics
    • Avise JC, Arnold J, Ball RM, Bermingham E, Lamb T, et al. (1987) Intraspecific phylogeography-the mitochondrial DNA bridge between population genetics and systematics. Annu Rev Ecol Syst 18: 489-522.
    • (1987) Annu Rev Ecol Syst , vol.18 , pp. 489-522
    • Avise, J.C.1    Arnold, J.2    Ball, R.M.3    Bermingham, E.4    Lamb, T.5
  • 2
    • 0001141436 scopus 로고
    • Gene trees and organismal histories - a phylogenetic approach to population biology
    • Avise JC (1989) Gene trees and organismal histories - a phylogenetic approach to population biology. Evolution 43: 1192-1208.
    • (1989) Evolution , vol.43 , pp. 1192-1208
    • Avise, J.C.1
  • 3
    • 0036876576 scopus 로고    scopus 로고
    • Methods in comparative phylogeography and their application to studying evolution in the North American Aridlands
    • Zink RM (2002) Methods in comparative phylogeography and their application to studying evolution in the North American Aridlands. Integr Comp Biol 42: 953-959.
    • (2002) Integr Comp Biol , vol.42 , pp. 953-959
    • Zink, R.M.1
  • 4
    • 33745767361 scopus 로고    scopus 로고
    • The structure of biodiversity-insights from molecular phylogeography
    • Hewitt GM (2004) The structure of biodiversity-insights from molecular phylogeography. Front Zool 1: 1-16.
    • (2004) Front Zool , vol.1 , pp. 1-16
    • Hewitt, G.M.1
  • 5
    • 4444357275 scopus 로고    scopus 로고
    • Lack of phylogeography in European mammals before the last glaciation
    • Hofreiter M, Serre D, Rohland N, Rabeder G, Nagel D, et al. (2004) Lack of phylogeography in European mammals before the last glaciation. P Natl Acad Sci USA 101: 12963-12968.
    • (2004) P Natl Acad Sci USA , vol.101 , pp. 12963-12968
    • Hofreiter, M.1    Serre, D.2    Rohland, N.3    Rabeder, G.4    Nagel, D.5
  • 6
    • 34249022624 scopus 로고    scopus 로고
    • Molecular biogeography of Europe: Pleistocene cycles and postglacial trends
    • Schimtt T (2007) Molecular biogeography of Europe: Pleistocene cycles and postglacial trends. Front Zool 4: 1-13.
    • (2007) Front Zool , vol.4 , pp. 1-13
    • Schimtt, T.1
  • 9
    • 0041847295 scopus 로고    scopus 로고
    • Endemic fishes of the Western Ghats and the Satpura hypothesis
    • Daniels RJR (2001) Endemic fishes of the Western Ghats and the Satpura hypothesis. Current Science 81: 240-244.
    • (2001) Current Science , vol.81 , pp. 240-244
    • Daniels, R.J.R.1
  • 10
    • 4444356086 scopus 로고    scopus 로고
    • Evolution of disjunct distributions among wet-zone species of the Indian subcontinent: Testing various hypotheses using a phylogenetic approach
    • Karanth KP (2003) Evolution of disjunct distributions among wet-zone species of the Indian subcontinent: Testing various hypotheses using a phylogenetic approach. Current Sci 85: 1276-1283.
    • (2003) Current Sci , vol.85 , pp. 1276-1283
    • Karanth, K.P.1
  • 11
    • 33645673718 scopus 로고    scopus 로고
    • Phylogenetic tests of distribution patterns in South Asia: Towards an integrative approach
    • Biswas S, Pawar SS (2006) Phylogenetic tests of distribution patterns in South Asia: towards an integrative approach. J Biosci 31: 95-113.
    • (2006) J Biosci , vol.31 , pp. 95-113
    • Biswas, S.1    Pawar, S.S.2
  • 12
    • 0034702196 scopus 로고    scopus 로고
    • The genetic legacy of the Quaternary ice ages
    • Hewitt G (2000) The genetic legacy of the Quaternary ice ages. Nature 405: 907-913.
    • (2000) Nature , vol.405 , pp. 907-913
    • Hewitt, G.1
  • 16
    • 0003980457 scopus 로고
    • nd edn. (Reprint edition, 1985 New Delhi: Today and Tomorrow's Printers and Publishers) Chicago: University of Chicago Press
    • nd edn. (Reprint edition, 1985 New Delhi: Today and Tomorrow's Printers and Publishers) Chicago: University of Chicago Press. 463 p.
    • (1939) The Fauna of British India, Including Ceylon and Burma , pp. 463
    • Pocock, R.I.1
  • 18
    • 42349092083 scopus 로고    scopus 로고
    • Molecular biogeography: Towards an integrated framework for conserving pan-African biodiversity
    • Moodley Y, Bruford MW (2007) Molecular biogeography: towards an integrated framework for conserving pan-African biodiversity. PLoS One 2: 1-9.
    • (2007) PLoS One , vol.2 , pp. 1-9
    • Moodley, Y.1    Bruford, M.W.2
  • 19
    • 0003716525 scopus 로고
    • A report prepared for the Department of Environment, Forests and Wildlife, Government of India at the Wildlife Institute of India, Dehradun: Wildlife Institute of India
    • Rodgers WA, Panwar HS (1988) Planning a Wildlife Protected Area network in India, Volumes 1 and 2. A report prepared for the Department of Environment, Forests and Wildlife, Government of India at the Wildlife Institute of India. Dehradun: Wildlife Institute of India. 608 p.
    • (1988) Planning a Wildlife Protected Area Network In India , vol.1-2 , pp. 608
    • Rodgers, W.A.1    Panwar, H.S.2
  • 20
    • 77954152341 scopus 로고    scopus 로고
    • A PCR-RFLP technique to identify Indian felids and canids from scats
    • doi: 10.1186/1756-0500-3-159)
    • Mukherjee S, Ashalakshmi, Home C, Ramakrishnan U (2010) A PCR-RFLP technique to identify Indian felids and canids from scats. BMC Research Notes 3: 159. doi: 10.1186/1756-0500-3-159).
    • (2010) BMC Research Notes , vol.3 , pp. 159
    • Mukherjee, S.1    Ashalakshmi, H.C.2    Ramakrishnan, U.3
  • 21
    • 0031020676 scopus 로고    scopus 로고
    • Phylogenetic reconstruction of the Felidae using 16S rRNA and NADH-5 mitochondrial genes
    • DOI: 10.1007/PL00000060
    • Johnson WE, O'Brien SJ (1997) Phylogenetic reconstruction of the Felidae using 16S rRNA and NADH-5 mitochondrial genes. J Mol Evol 44(suppl 1): S98-S116. DOI: 10.1007/PL00000060.
    • (1997) J Mol Evol , vol.44 , Issue.SUPPL. 1
    • Johnson, W.E.1    O'Brien, S.J.2
  • 22
    • 36148964033 scopus 로고    scopus 로고
    • Rapid multiplex PCR based species identification of wild tigers using non-invasive samples
    • Mukherjee, N, Mondol S, Andheria A, Ramakrishnan U (2007) Rapid multiplex PCR based species identification of wild tigers using non-invasive samples. Conserv Genet 8: 1465-1470.
    • (2007) Conserv Genet , vol.8 , pp. 1465-1470
    • Mukherjee, N.1    Mondol, S.2    Andheria, A.3    Ramakrishnan, U.4
  • 23
    • 41949109266 scopus 로고    scopus 로고
    • Molecular diversity and phylogeography of the Asian leopard cat, Felis bengalensis, inferred from mitochondrial and Y-chromosomal DNA sequences
    • Tamada T, Siriaroonrat B, Subramaniam V, Hamachi M, Lin LK, et al. (2008) Molecular diversity and phylogeography of the Asian leopard cat, Felis bengalensis, inferred from mitochondrial and Y-chromosomal DNA sequences. Zool Sci 25: 154-163.
    • (2008) Zool Sci , vol.25 , pp. 154-163
    • Tamada, T.1    Siriaroonrat, B.2    Subramaniam, V.3    Hamachi, M.4    Lin, L.K.5
  • 24
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 26
    • 0000501656 scopus 로고
    • Information theory as an extension of the maximum likelihood principle
    • In: Petrov BN, Csaki F, eds, Hungary: Akademiai Kiado
    • Akaike H (1973) Information theory as an extension of the maximum likelihood principle. In: Petrov BN, Csaki F, eds. Second International Symposium on Information Theory. Hungary: Akademiai Kiado. pp 267-281.
    • (1973) Second International Symposium On Information Theory , pp. 267-281
    • Akaike, H.1
  • 27
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 28
    • 33747828694 scopus 로고    scopus 로고
    • Model Test Server: A web-based tool for the statistical selection of models of nucleotide substitution online
    • Posada D (2006) Model Test Server: a web-based tool for the statistical selection of models of nucleotide substitution online. Nucleic Acids Res 34: W700-W703.
    • (2006) Nucleic Acids Res , vol.34
    • Posada, D.1
  • 29
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for constructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for constructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 30
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368-376.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 31
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt H-J, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48.
    • (1999) Mol Biol Evol , vol.16 , pp. 37-48
    • Bandelt, H.-J.1    Forster, P.2
  • 33
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 34
    • 0029980416 scopus 로고    scopus 로고
    • New statistical tests of neutrality of mutations
    • Fu YX (1996) New statistical tests of neutrality of mutations. Genetics 143: 557-570.
    • (1996) Genetics , vol.143 , pp. 557-570
    • Fu, Y.X.1
  • 35
    • 0032814604 scopus 로고    scopus 로고
    • Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA
    • Schneider S, Excoffier L (1999) Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA. Genetics 152: 1079-1089.
    • (1999) Genetics , vol.152 , pp. 1079-1089
    • Schneider, S.1    Excoffier, L.2
  • 36
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers AR, Harpending HC (1992) Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9: 552-569.
    • (1992) Mol Biol Evol , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.C.2
  • 37
    • 0030341925 scopus 로고    scopus 로고
    • Molecular phylogeny of mitochondrial cytochrome b and 12S rRNA sequences in the Felidae: Ocelot and domestic cat lineages
    • Masuda R, Lopez JV, Pecon-Slattery J, Yuhki N, O'Brien SJ (1996) Molecular phylogeny of mitochondrial cytochrome b and 12S rRNA sequences in the Felidae: Ocelot and domestic cat lineages. Mol Phylogenet Evol 6: 351-365.
    • (1996) Mol Phylogenet Evol , vol.6 , pp. 351-365
    • Masuda, R.1    Lopez, J.V.2    Pecon-Slattery, J.3    Yuhki, N.4    O'Brien, S.J.5
  • 39
    • 58249117394 scopus 로고    scopus 로고
    • version 1.2.3. American Museum of Natural History, Accessed 2009 December 16 2009
    • Ersts PJ Geographic Distance Matrix Generator, version 1.2.3. American Museum of Natural History. Available: http://biodiversityinformatics.amnh.org/open_source/gdmg/download.php.Ac cessed 2009 December 16 2009.
    • Geographic Distance Matrix Generator
    • Ersts, P.J.1
  • 40
    • 0036318165 scopus 로고    scopus 로고
    • IBD (Isolation By Distance): A program for analyses of isolation by distance
    • Bohonak AJ (2002) IBD (Isolation By Distance): A program for analyses of isolation by distance. J Hered 93: 153-154.
    • (2002) J Hered , vol.93 , pp. 153-154
    • Bohonak, A.J.1
  • 41
    • 74949129855 scopus 로고
    • On the status of the leopard cat (Felis bengalensis) in Sumatra
    • Santhiapillai C, Supraham H (1985) On the status of the leopard cat (Felis bengalensis) in Sumatra. Tigerpaper XII: 8-13.
    • (1985) Tigerpaper XII , pp. 8-13
    • Santhiapillai, C.1    Supraham, H.2
  • 43
    • 41249092053 scopus 로고    scopus 로고
    • Modelling distribution of Amazonian tree species and diversity using remote sensing measurements
    • Saatchi S, Buermann W, ter Steege H, Mori S, Smith TB (2008) Modelling distribution of Amazonian tree species and diversity using remote sensing measurements. Remote Sens Environ 112: 2000-2017.
    • (2008) Remote Sens Environ , vol.112 , pp. 2000-2017
    • Saatchi, S.1    Buermann, W.2    ter Steege, H.3    Mori, S.4    Smith, T.B.5
  • 44
    • 67749108456 scopus 로고    scopus 로고
    • Ecological Niche Models and Coalescent Analysis of Gene Flow Support Recent Allopatric Isolation of Parasitoid Wasp Populations in the Mediterranean
    • doi:10.1371/journal.pone. 0005901
    • Lozier JD, Mills NJ (2009) Ecological Niche Models and Coalescent Analysis of Gene Flow Support Recent Allopatric Isolation of Parasitoid Wasp Populations in the Mediterranean. PLoS ONE 4(6): e5901. doi:10.1371/journal.pone. 0005901.
    • (2009) PLoS ONE , vol.4 , Issue.6
    • Lozier, J.D.1    Mills, N.J.2
  • 45
    • 27944446350 scopus 로고    scopus 로고
    • Maximum entropy modeling of species geographic distributions
    • Phillips SJ, Anderson RP, Schapire RE (2006) Maximum entropy modeling of species geographic distributions. Ecol Model 190: 231-259.
    • (2006) Ecol Model , vol.190 , pp. 231-259
    • Phillips, S.J.1    Anderson, R.P.2    Schapire, R.E.3
  • 46
    • 33645917058 scopus 로고    scopus 로고
    • Novel methods improve prediction of species' distributions from occurrence data
    • Elith J, Graham CH, Anderson RP, Dudi'k M, Ferrier S, et al. (2006) Novel methods improve prediction of species' distributions from occurrence data. Ecography 29: 129-151.
    • (2006) Ecography , vol.29 , pp. 129-151
    • Elith, J.1    Graham, C.H.2    Anderson, R.P.3    Dudi'k, M.4    Ferrier, S.5
  • 47
    • 0002965463 scopus 로고
    • A biogeogaphic analysis of Australian Elapid snakes
    • in Longmore, R. (ed.), Australian Flora and Fauna Series
    • Nix HA (1986) A biogeogaphic analysis of Australian Elapid snakes, in Longmore, R. (ed.) Atlas of Australian Elapid Snakes. Australian Flora and Fauna Series 8: 4-15.
    • (1986) Atlas of Australian Elapid Snakes , vol.8 , pp. 4-15
    • Nix, H.A.1
  • 48
    • 0020083498 scopus 로고
    • The meaning and use of the area under a Receiver Operating Characteristic (ROC) curve
    • Hanley JA, McNeil BJ (1982) The meaning and use of the area under a Receiver Operating Characteristic (ROC) curve. Radiology 143: 29-36.
    • (1982) Radiology , vol.143 , pp. 29-36
    • Hanley, J.A.1    McNeil, B.J.2
  • 49
    • 0033907676 scopus 로고    scopus 로고
    • On the relationship between niche and distribution
    • Pulliam HR (2000) On the relationship between niche and distribution. Ecol Lett 3: 349-361.
    • (2000) Ecol Lett , vol.3 , pp. 349-361
    • Pulliam, H.R.1
  • 50
    • 39749129344 scopus 로고    scopus 로고
    • Sex-biased gene flow and colonization in the Formosan lesser horseshoe bat: Inference from nuclear and mitochondrial markers
    • Chen SF, Jones G, Rossiter SJ (2008) Sex-biased gene flow and colonization in the Formosan lesser horseshoe bat: inference from nuclear and mitochondrial markers. J Zool 274: 207-215.
    • (2008) J Zool , vol.274 , pp. 207-215
    • Chen, S.F.1    Jones, G.2    Rossiter, S.J.3
  • 51
    • 0035561920 scopus 로고    scopus 로고
    • Determinants of effective population size for loci with different modes of inheritance
    • Storz JF, Ramakrishnan U, Alberts SC (2001) Determinants of effective population size for loci with different modes of inheritance. J Hered 92: 497-502.
    • (2001) J Hered , vol.92 , pp. 497-502
    • Storz, J.F.1    Ramakrishnan, U.2    Alberts, S.C.3
  • 52
    • 0029909630 scopus 로고    scopus 로고
    • Effective sizes and dynamics of uniparentally and diparentally inherited genes
    • Chesser R, Baker R (1996) Effective sizes and dynamics of uniparentally and diparentally inherited genes. Genetics 144: 1225-1235.
    • (1996) Genetics , vol.144 , pp. 1225-1235
    • Chesser, R.1    Baker, R.2
  • 53
    • 0000456480 scopus 로고
    • Mating systems, philopatry and dispersal in birds and mammals
    • Greenwood PJ (1980) Mating systems, philopatry and dispersal in birds and mammals. Anim Behav 28: 1140-1162.
    • (1980) Anim Behav , vol.28 , pp. 1140-1162
    • Greenwood, P.J.1
  • 54
    • 58149403755 scopus 로고
    • Competition for mates and predominant juvenile dispersal in mammals
    • Dobson FS (1982) Competition for mates and predominant juvenile dispersal in mammals. Anim Behav 30: 1183-1192.
    • (1982) Anim Behav , vol.30 , pp. 1183-1192
    • Dobson, F.S.1
  • 55
    • 0021061417 scopus 로고
    • Natal philopatry among solitary mammals
    • Waser PM, Jones WT (1983) Natal philopatry among solitary mammals. The Q Rev Biol 58: 355-390.
    • (1983) The Q Rev Biol , vol.58 , pp. 355-390
    • Waser, P.M.1    Jones, W.T.2
  • 56
    • 4544372569 scopus 로고    scopus 로고
    • Home range size and social organisation of black footed cats
    • Sliwa A (2002) Home range size and social organisation of black footed cats. Mamm Biol 69: 96-107.
    • (2002) Mamm Biol , vol.69 , pp. 96-107
    • Sliwa, A.1
  • 58
    • 0037376204 scopus 로고    scopus 로고
    • Landscape genetics: Combining landscape ecology and population genetics
    • Manel S, Schwartz MK, Luikart G, Taberlet P (2003) Landscape genetics: combining landscape ecology and population genetics. Trends Ecol. Evol 18: 189-197.
    • (2003) Trends Ecol. Evol , vol.18 , pp. 189-197
    • Manel, S.1    Schwartz, M.K.2    Luikart, G.3    Taberlet, P.4
  • 59
    • 18144415876 scopus 로고    scopus 로고
    • The Jungle Cat Felis chaus in Indochina: A threatened population of a widespread and adaptable species
    • Duckworth JW, Poole CM, Tizard RJ, Walston JL, Timmins RJ (2005) The Jungle Cat Felis chaus in Indochina: a threatened population of a widespread and adaptable species. Biodivers Conserv 14: 1263-1280.
    • (2005) Biodivers Conserv , vol.14 , pp. 1263-1280
    • Duckworth, J.W.1    Poole, C.M.2    Tizard, R.J.3    Walston, J.L.4    Timmins, R.J.5
  • 60
    • 0024187905 scopus 로고
    • Photosynthetic pathways, distribution, and ecological characteristics of grass species in Egypt
    • Batanouny KH, Stichler W, Ziegler H (1988) Photosynthetic pathways, distribution, and ecological characteristics of grass species in Egypt. Oecologia 75: 539-548.
    • (1988) Oecologia , vol.75 , pp. 539-548
    • Batanouny, K.H.1    Stichler, W.2    Ziegler, H.3
  • 61
    • 0031414421 scopus 로고    scopus 로고
    • Preliminary vegetation maps of the world since the Last Glacial Maximum: An aid to archaeological understanding
    • Adams JM, Faure H (1997) Preliminary vegetation maps of the world since the Last Glacial Maximum: An aid to archaeological understanding. J Archaeol Sci 24: 623-647.
    • (1997) J Archaeol Sci , vol.24 , pp. 623-647
    • Adams, J.M.1    Faure, H.2
  • 63
    • 0242439709 scopus 로고    scopus 로고
    • A GIS-based vegetation map of the world at the Last Glacial Maximum (25,000 to 15, 000 BP)
    • Ray N, Adams JM (2001) A GIS-based vegetation map of the world at the Last Glacial Maximum (25,000 to 15, 000 BP). IntArch 11: 1-44.
    • (2001) IntArch , vol.11 , pp. 1-44
    • Ray, N.1    Adams, J.M.2
  • 64
    • 38649087986 scopus 로고    scopus 로고
    • Climate, phylogeny and ecological distribution of C4 grasses
    • Edwards EJ, Still JS (2008) Climate, phylogeny and ecological distribution of C4 grasses. Ecol Lett 11: 266-276.
    • (2008) Ecol Lett , vol.11 , pp. 266-276
    • Edwards, E.J.1    Still, J.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.