Detection of Mycoplasma pneumoniaein simulated and true clinical throat swab specimens by nanorod array-surface-enhanced raman spectroscopy

PLoS ONE

Volumn 5, Issue 10, 2010, Pages

  Hennigan, Suzanne L ^a   Driskell, Jeremy D ^a   Dluhy, Richard A ^a   Zhao, Yiping ^a   Tripp, Ralph A ^a   Waites, Ken B ^b   Krause, Duncan C ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b UNIVERSITY OF ALABAMA AT BIRMINGHAM   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM DETECTION; BACTERIUM IDENTIFICATION; CONTROLLED STUDY; MYCOPLASMA PNEUMONIAE; NANOROD ARRAY SURFACE ENHANCED RAMAN SPECTROSCOPY; NONHUMAN; RAMAN SPECTROMETRY; REAL TIME POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; THROAT CULTURE; CLUSTER ANALYSIS; HUMAN; ISOLATION AND PURIFICATION; LIMIT OF DETECTION; METHODOLOGY; MICROBIOLOGY; PHARYNX; POLYMERASE CHAIN REACTION; PRINCIPAL COMPONENT ANALYSIS; REPRODUCIBILITY;

MYCOPLASMA; MYCOPLASMA PNEUMONIAE; PROKARYOTA;

NANOTUBE;

CLUSTER ANALYSIS; HUMANS; LIMIT OF DETECTION; MYCOPLASMA PNEUMONIAE; NANOTUBES; PHARYNX; POLYMERASE CHAIN REACTION; PRINCIPAL COMPONENT ANALYSIS; REPRODUCIBILITY OF RESULTS; SPECTRUM ANALYSIS, RAMAN;

EID: 78149431196     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0013633     Document Type: Article

References (47)

1. Waites KB, Balish MF, Atkinson TP (2008) New insights into the pathogenesis and detection of Mycoplasma pneumoniae infections. Future Microbiology 3: 635-648.
2. Daxboeck F, Krause R, Wenisch, C (2003) Laboratory diagnosis of Mycoplasma pneumoniae infection. Clinical Microbiology and Infection 9: 263-273.
3. Dorigo-Zetsma JW, Zaat SA, Wertheim-van Dillen PM, Spanjaard L, Rijntjes J, et al. (1999) Comparison of PCR, culture, and serological tests for diagnosis of Mycoplasma pneumoniae respiratory tract infection in children. Journal of Clinical Microbiology 37: 14-17.
4. Waites KB, Talkington DF (2004) Mycoplasma pneumoniae and its role as a human pathogen. Clinical Microbiology Reviews 17: 697-728.
5. Atkinson TP, Balish MF, Waites KB (2008) Epidemiology, clinical manifestations, pathogenesis and laboratory detection of Mycoplasma pneumoniae infections. FEMS Microbiology Reviews 32: 956-973.
6. Vo-Dinh T, Houck K, Stokes DL (1994) Surface-enhanced Raman gene probes. Analytical Chemistry 66: 3379-3383.
7. Chu H, Huang Y, Zhao YP (2008) Silver Nanorod Arrays as a Surface-Enhanced Raman Scattering Substrate for Foodborne Pathogenic Bacteria Detection. Applied Spectroscopy 62: 922-931.
8. Patel IS, Premasari WR, Moir DT, Ziegler LD (2008) Barcoding bacterial cells: a SERS-based methodlogy for pathogen identification. Journal of Raman Spectroscopy 39: 1660-1672.
9. Driskell JD, Shanmukh S, Liu Y, Chaney SB, Tang XJ, et al. (2008) The use of alligned silver nanorod arrays prepared by oblique angle deposition as surface enhanced Raman scattering substrates. Journal of Physical Chemistry C 112: 895-901.
10. Shanmukh S, Jones L, Driskell J, Zhao Y, Dluhy R, et al. (2006) Rapid and sensitive detection of respiratory virus molecular signatures using a silver nanorod array SERS substrate. Nano Letters 6: 2630-2636.
11. Driskell JD, Zhu Y, Kirkwood CD, Zhao Y, Dluhy RA, et al. (2010) Rapid and sensitive detection of rotavirus molecular signatures using surface enhanced Raman spectroscopy. PLoS One 5: e10222. doi:10.1371/journal.pone001022.
12. Jacobs E, Vonski M, Oberle K, Optiz O, Pietsch K (1996) Are outbreaks and sporadic respiratory infections by Mycoplasma pneumoniae due to two distinct subtypes? European Journal of Clinical Microbiology and Infectious Disease 15: 38-44.
13. Kenri T, Okazaki N, Yamazaki T, Narita M, Itzumikawa K, et al. (2008) Genotyping analysis of Mycoplasma pneumoniae clinical strains in Japan between 1995 and 2005: type shift phenomenon of M-pneumoniae clinical strains. Journal of Medical Microbiology 57: 469-475.
14. Dumke R, Catrein I, Pirkl E, Herrmann R, Jacobs E (2003) Subtyping of Mycoplasma pneumoniae isolates based on extended genome sequencing and on expression profiles. International Journal of Medical Microbiology 292: 513-525.
15. Krause DC, Leith DK, Wilson RM, Baseman JB (1982) Identification of Mycoplasma pneumoniae proteins associated with hemadsorption and virulence. Infection and Immunity 35: 809-817.
16. Dallo SF, Lazell AL, Chavoya A, Reddy SP, Baseman JB (1996) Biofunctional domains of the Mycoplasma pneumoniae P30 adhesin. Infection and Immunity 64: 2595-2601.
17. Tully JG, Whitcomb RF, Clark HF, Williamson DL (1977) Pathogenic mycoplasmas: cultivation and vertebrate pathogenicity of a new spiroplasma. Science 195: 892-894.
18. Lipman RP, Clyde WA, Jr., Denny FW (1969) Characteristics of virulent attenuated, and avirulent Mycoplasma pneumoniae strains. Journal of Bacteriology 100: 1037-1043.
19. Dumke R, Schurwanz N, Lenz M, Schuppler M, Luck C, Jacobs E (2007) Sensitive detection of Mycoplasma pneumoniae in human respiratory tract samples by optimized real-time PCR approach. Journal of Clinical Microbiology 45: 2726-2730.
20. Leverette CL, Jacobs SA, Shanmukh S, Chaney SB, Dluhy RA, et al. (2006) Aligned silver nanorod arrays as substrates for surface-enhanced infrared absorption spectroscopy. Applied Spectroscopy 60: 906-913.
21. Zhao YP, Chaney SB, Shanmukh S, Dluhy RA (2006) Polarized surface enhanced Raman and absorbance spectra of aligned silver nanorod arrays. Journal of Physical Chemistry B 110: 3153-3157.
22. Abell JL, Driskell JD, Dluhy RA, Tripp RA, Zhao YP (2009) Fabrication and characterization of a multiwall array SERS chip with biological applications. Biosensing and Bioelectronics 24: 3663-3670.
23. Savitsky A, Golay MJE (1964) Smoothing and differentiation of data by simplified least squares procedures. Analytical Chemistry 36: 1627-1639.
24. Alfassi ZB (2004) On the normalization of a mass spectrum for comparison of two spectra. Journal of the American Society for Mass Spectrometry 15: 383-387.
25. Esbensen KH (2004) Multivariate Data Analysis, In Practice, 5th ed. Oslo, Norway: CAMO Process.
26. Wold S, Sjostrom M, Eriksson L (2001) PLS Regression: a basic tool of chemometrics. Chemometrics and Intelligent Laboratory Systems 58: 109-130.
27. Barker M, Rayens W (2003) Partial least squares for discrimination. Journal of Chemometrics 17: 166-173.
28. VanKuppeveld FJM, VanDerLogt JTM, Angulo AF, VanZoest MJ, Quint MGV, et al. (1992) Genus- and species-specific identification of mycoplasmas by 16S rRNA amplification. Applied and Environmental Microbiology 58: 2606-2615.
29. nd edition. Barnett NW, ed. Cambridge: Royal Society of Chemistry.
30. Beebe KR, Pell RJ, Seasholtz MB (1998) Chemometrics: a Practical Guide. New York: John Wiley & Sons.
31. Alfassi ZB (2004) On the normalization of a mass spectrum for comparison of two spectra. Journal of the American Society for Mass Spectrometry 15: 383-387.
32. Musumarra G, Barresi V, Condorelli DF, Fortuna CG, Scire S (2004) Potentialities of multivariate approaches in genome-based cancer research: identification of candidate genes for new diagnostics by PLS discriminant analysis. Journal of Chemometrics 18: 125-132.
33. Loens K, Ursi D, Goossens H, Ieven M (2003) Molecular Diagnosis of Mycoplasma pneumoniae Respiratory Tract Infections. Journal of Clinical Microbiology 41: 4915-4923.
34. Waring AL, Halse TA, Csiza CK, Carlyn CJ, Arruda Musser K, et al. (2001) Development of a Genomics-Based PCR Assay for Detection of Mycoplasma pneumoniae in a Large Outbreak in New York State. Journal of Clinical Microbiology 39: 1385-1390.
35. Su CJ, Chavoya A, Dallo SF, Baseman JB (1990) Sequence divergency of the cytadhesin gene of Mycoplasma pneumoniae. Infection and Immunity 58: 2669-2674.
36. Proft T, Hilbert H, Layhschmitt G, Herrmann R (1995) The proline-rich P65 protein of Mycoplasma pneumoniae is a component of the TritonX-100-insoluble fraction and exhibits size polymorphism in the strains M129 AND FH. Journal of Bacteriology 177: 3370-3378.
37. Ruland K, Himmelreich R, Herrmann R (1994) Sequence divergence in the ORF6 gene of Mycoplasma pneumoniae. Journal of Bacteriology 176: 5202-5209.
38. Romero-Arroyo CE, Jordan J, Peacock SJ, Willby MJ, Farmer MA, et al. (1999) Mycoplasma pneumoniae protein P30 is required for cytadherence and associated with proper cell development. Journal of Bacteriology 181: 1079-1087.
39. Liu YJ, Zhang ZY, Zhao Q, Dluhy RA, Zhao YP (2009) Surface enhanced Raman scattering from an Ag nanorod array substrate: the site dependent enhancement and layer absorbance effect. The Journal of Physical Chemistry C 113: 9664-9669.
40. Loens K, Goossens H (2010) Acute respiratory infection due to Mycoplasma pneumoniae: current status of diagnostic methods. European Journal of Clinical Microbiology and Infectious Disease 29: 1055-1069.
41. Yakes BJ, Lipert RJ, Bannantine JP, Porter MD (2008) Impact of protein shedding on detection of Mycobacterium avium subsp paratuberculosis by a whole-cell immunoassay incorporating surface-enhanced Raman scattering. Clinical and Vaccine Immunology 15: 235-242.
42. Jarvis RM, Goodacre R (2004) Discrimination of bacteria using surface enhanced Raman spectroscopy. Analytical Chemistry 76: 40-47.
43. Demirel MC, Kao P, Malvadkar N, Wang H, Gong X, Poss M, Allara DL (2009) Bio-organism sensing via surface enhanced Raman spectroscopy on controlled metal/polymer nanostructured substrates. Biointerphases 4: 35-41.
44. Naumann D (2001) FT-Infrared and FT-Raman spectroscopy in biomedical research. Applied Spectroscopy Reviews 36: 239-298.
45. Ursi D, Dirven K, Loens K, Ieven M, Goossens H (2003) Detection of Mycoplasma pneumoniae in respiratory samples by real-time PCR using an inhibition control. Journal of Microbiological Methods 55: 149-153.
46. Maquelin K, Hoogenboezem T, Jachtenberg JW, Dumke R, Jacobs E, et al. (2009) Raman spcetroscopic typing reveals the presence of carotenoids in Mycoplasma pneumoniae. Microbiology 155: 2068-2077.
47. Premasiri WR, Moir DT, Klempner MS, Krieger N, Jones G, 2nd, et al. (2005) Characterization of the surface enhanced raman scattering (SERS) of bacteria. Journal of Physical Chemistry B 109: 312-320.