DNA condensates organized by the capsid protein VP15 in White Spot Syndrome Virus

Virology

Volumn 408, Issue 2, 2010, Pages 197-203

  Liu, Yingjie ^a,b   Wu, Jinlu ^a   Chen, Hu ^b   Hew, Choy Leong ^a,b   Yan, Jie ^a,b,c  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^c NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

AFM; DNA condensation; Magnetic tweezers; VP15; WSSV

Indexed keywords

CAPSID PROTEIN; DOUBLE STRANDED DNA; PROTEIN VP15; UNCLASSIFIED DRUG; VIRUS DNA;

ARTICLE; ATOMIC FORCE MICROSCOPY; CHROMOSOME CONDENSATION; CONTROLLED STUDY; DNA PACKAGING; GENETIC MANIPULATION; GENOME ANALYSIS; IN VITRO STUDY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN FUNCTION; QUALITATIVE ANALYSIS; VIRUS GENOME; WHITE SPOT SYNDROME VIRUS;

ANIMALS; DNA PACKAGING; DNA, VIRAL; GENOME, VIRAL; MICROSCOPY, ATOMIC FORCE; NUCLEOCAPSID PROTEINS; PENAEIDAE; TENSILE STRENGTH; VIRUS ASSEMBLY; WHITE SPOT SYNDROME VIRUS 1;

MIRIDAE; SHRIMP WHITE SPOT SYNDROME VIRUS;

EID: 78149414315     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2010.09.008     Document Type: Article

References (31)

1. Borca M.V., Irusta P.M., Kutish G.F., Carillo C., Afonso C.L., Burrage A.T., Neilan J.G., Rock D.L. A structural DNA binding protein of African swine fever virus with similarity to bacterial histone-like proteins. Arch. Virol. 1996, 141(2):301-313.
2. Braunagel S.C., Russell W.K., Rosas-Acosta G., Russell D.H., Summers M.D. Determination of the protein composition of the occlusion-derived virus of Autographa californica nucleopolyhedrovirus. Proc. Natl Acad. Sci. USA 2003, 100(17):9797-9802.
3. Bud H.M., Kelly D.C. An electron microscope study of partially lysed baculovirus nucleocapsids: the intranucleocapsid packaging of viral DNA. J. Ultra. Res. 1980, 73(3):361-368.
4. Dame R.T. The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin. Mol. Microbiol. 2005, 56(4):858-870.
5. Deng F., Wang R., Fang M., Jiang Y., Xu X., Wang H., Chen X., Arif B.M., Guo L., Hu Z. Proteomics analysis of Helicoverpa armigera single nucleocapsid nucleopolyhedrovirus identified two new occlusion-derived virus-associated proteins, HA44 and HA100. J. Virol. 2007, 81(17):9377-9385.
6. Durand S., Lightner D.V., Bonami J.R. Differentiation of BP-type baculovirus strains using in situ hybridization. Dis. Aquat. Org. 1998, 32(3):237-239.
7. Fu H., Chen H., Marko J.F., Yan J. Two distinct overstretched DNA states. Nucleic Acids Res. 2010, 38(16):5594-5600.
8. Fu W.B., Wang X.L., Zhang X.H., Ran S.Y., Yan J., Li M. Compaction dynamics of single DNA molecules under tension. J. Am. Chem. Soc. 2006, 128(47):15,040-15,041.
9. Huang C., Zhang L., Zhang J., Xiao L., Wu Q., Chen D., Li J.K. Purification and characterization of White Spot syndrome virus (WSSV) produced in an alternate host: crayfish, Cambarus clarkii. Virus Res. 2001, 76(2):115-125.
10. Hud N.V., Downing K.H. Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids. Proc. Natl Acad. Sci. U. S. A. 2001, 98(26):14,925-14,930.
11. Hunt M. Virology - Chapter Three. Microbiology and Immunology 2010, http://pathmicro.med.sc.edu/mhunt/dna1.htm (accessed 22 September 2010).
12. Ke J., Wang J., Deng R., Wang X. Autographa californica multiple nucleopolyhedrovirus ac66 is required for the efficient egress of nucleocapsids from the nucleus, general synthesis of preoccluded virions and occlusion body formation. Virology 2008, 374(2):421-431.
13. Krishnamoorthy G., Roques B., Darlix J.L., Mely Y. DNA condensation by the nucleocapsid protein of HIV-1: a mechanism ensuring DNA protection. Nucleic Acids Res. 2003, 31(18):5425-5432.
14. Lanier L.M., Volkman L.E. Actin binding and nucleation by Autographa california M nucleopolyhedrovirus. Virology 1998, 243(1):167-177.
15. Li Z., Lin Q., Chen J., Wu J.L., Lim T.K., Loh S.S., Tang X., Hew C.L. Shotgun identification of the structural proteome of shrimp white spot syndrome virus and iTRAQ differentiation of envelope and nucleocapsid subproteomes. Mol. Cell. Proteomics 2007, 6(9):1609-1620.
16. Liu Y., Chen H., Kenney L.J., Yan J. A divalent switch drives H-NS/DNA-binding conformations between stiffening and bridging modes. Genes Dev. 2010, 24(4):339-344.
17. Luijsterburg M.S., White M.F., van Driel R., Dame R.T. The major architects of chromatin: architectural proteins in bacteria, archaea and eukaryotes. Crit. Rev. Biochem. Mol. Biol. 2008, 43(6):393-418.
18. Marko J.F., Siggia E.D. Stretch DNAs. Macromolecules 1995, 28:8759-8770.
19. Mayo M.A. A summary of taxonomic changes recently approved by ICTV. Arch. Virol. 2002, 147(8):1655-1663.
20. Skoko D., Yan J., Johnson R.C., Marko J.F. Low-force DNA condensation and discontinuous high-force decondensation reveal a loop-stabilizing function of the protein Fis. Phys. Rev. Lett. 2005, 95(20):208-210.
21. Smith S.B., Finzi L., Bustamante C. Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads. Science 1992, 258(5085):1122-1126.
22. Sun S., Kondabagil K., Draper B., Alam T.I., Bowman V.D., Zhang Z., Hegde S., Fokine A., Rossmann M.G., Rao V.B. The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces. Cell 2008, 135(7):1251-1262.
23. Tweeten K.A., Bulla L.A., Consigli R.A. Characterization of an extremely basic protein derived from granulosis virus nucleocapsids. J. Virol. 1980, 33(2):866-876.
24. van Hulten M.C., Reijns M., Vermeesch A.M., Zandbergen F., Vlak J.M. Identification of VP19 and VP15 of white spot syndrome virus (WSSV) and glycosylation status of the WSSV major structural proteins. J. Gen. Virol. 2002, 83(Pt 1):257-265.
25. Wang H., Bash R., Lindsay S.M., Lohr D. Solution AFM studies of human Swi-Snf and its interactions with MMTV DNA and chromatin. Biophys. J. 2005, 89(5):3386-3398.
26. Wilson M.E., Miller L.K. Changes in the nucleoprotein complexes of a baculovirus DNA during infection. Virology 1986, 151(2):315-328.
27. Wilson M.E., Mainprize T.H., Friesen P.D., Miller L.K. Location, transcription, and sequence of a baculovirus gene encoding a small arginine-rich polypeptide. J. Virol. 1987, 61(3):661-666.
28. Witteveldt J., Vermeesch A.M., Langenhof M., de Lang A., Vlak J.M., van Hulten M.C. Nucleocapsid protein VP15 is the basic DNA binding protein of white spot syndrome virus of shrimp. Arch. Virol. 2005, 150(6):1121-1133.
29. Yan J., Skoko D., Marko J.F. Near-field-magnetic-tweezer manipulation of single DNA molecules. Phys. Rev. E. Stat. Nonlin. Soft. Matter. Phys. 2004, 70(1 Pt 1):011905.
30. Yan J., Maresca T.J., Skoko D., Adams C.D., Xiao B., Christensen M.O., Heald R., Marko J.F. Micromanipulation studies of chromatin fibers in Xenopus egg extracts reveal ATP-dependent chromatin assembly dynamics. Mol. Biol. Cell 2007, 18(2):464-474.
31. Zhang X., Xu X., Hew C.L. The structure and function of a gene encoding a basic peptide from prawn white spot syndrome virus. Virus Res. 2001, 79(1-2):137-144.