Theoretical predictions for ionization cross sections of DNA nucleobases impacted by light ions

Physics in Medicine and Biology

Volumn 55, Issue 20, 2010, Pages 6053-6067

  Champion, C ^a   Lekadir, H ^a   Galassi, M E ^b   Fojon O ^b   Rivarola, R D ^b   Hanssen, J ^a  

^a UNIVERSITÉ DE LORRAINE   (France)

^b INSTITUTO DE FÍSICA ROSARIO   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; DNA; ION; PROTON;

ALPHA RADIATION; ARTICLE; CHEMISTRY; DNA DAMAGE; GENETICS; QUANTUM THEORY;

ALPHA PARTICLES; CARBON; DNA; DNA DAMAGE; IONS; PROTONS; QUANTUM THEORY;

EID: 78149302910     PISSN: 00319155     EISSN: 13616560     Source Type: Journal    
DOI: 10.1088/0031-9155/55/20/002     Document Type: Article

References (58)

1. Abbas I, Champion C, Zarour B, Lasri B and Hanssen J 2008 Single and multiple cross sections for ionizing processes of biological molecules by protons and α-particle impact: a classical Monte Carlo approach Phys. Med. Biol. 53 N41
2. Aflatooni K, Scheer A M and Burrow P D 2006 Total dissociative electron attachment cross sections for molecular constituents of DNA J. Chem. Phys. 125 054301
3. Allan R J, Courbin C, Salas P and Wahnon P 1990 State-selective effects in the differential cross section for electron capture from laser-excited sodium atoms by protons J. Phys. B: At. Mol. Opt. Phys. 23 L461
4. Alvadaro F, Bari S, Hoekstra R and Schalthölter T 2007 Interactions of neutral and singly charged keV atomic particles with gas-phase adenine molecules J. Chem. Phys. 127 034301
5. Bacchus-Montabonel M C, Łabuda M, Tergiman Y S and Sienkiewicz J E 2005 Theoretical treatment of chargetransfer processes induced by collision of Cq+ ions with uracil Phys. Rev. A 72 052706
6. Belkić D 1978 A quantum theory of ionisation in fast collisions between ions and atomic systems J. Phys. B: At. Mol. Phys. 11 3529
7. Belkić D, Gayet R, Hanssen J and Salin A 1986 The first Born approximation for charge transfer collisions J. Phys. B: At. Mol. Phys. 19 2945
8. Belkić D, Gayet R and Salin A 1979 Electron capture in high-energy ion-atom collisions Phys. Rep. 56 279
9. Belkić D, Mančev I and Hanssen J 2008 Four-body methods for high-energy ion-atom collisions Rev. Mod. Phys. 80 249
10. Bernard J, Brédy R, Chan L, Martin S and Wei B 2006 Relative partial cross-sections and target fragmentation in ion-adenine collisions at 56 keV Nucl. Instrum. Methods Phys. Res. B 245 103
11. Bernhardt P and Paretzke H G 2003 Calculation of electron impact ionisation cross sections of DNA using the Deutsch-Märk and Binary-Encounter-Bethe formalisms Int. J. Mass Spectr. 223-224 599
12. Boudrioua O, Champion C, Dal Cappello C and Popov Y V 2007 Ab-initio calculation of differential and total cross sections for the ionization of water vapor by protons Phys. Rev. A 75 022720
13. Brédy R, Bernard J, Chen L, Buchet-Poulizac M C and Martin S 2007 Dissociation of charge selected biomolecules induced by electronic capture processes in collisions with positive ions Nucl. Instrum. Methods Phys. Res. B 261 114
14. 2+ ions Nucl. Instrum. Methods Phys. Res. B 235 392
15. Champion C 2010a Electron impact ionization of liquid and gaseous water: a single-centre partial wave approach Phys. Med. Biol. 55 11
16. 2O collision Phys. Rev. A 75 032724
17. Champion C, Hanssen J and Rivarola R D 2010b Theories on high-energy heavy ion collisions with applications in hadrontherapy. The first Born approximation for ionization and charge transfer in energetic collision of multiply charged ions with water Book Series: Advances in Quantum Chemistry submitted
18. Clementi E 1965 Tables of atomic functions IBM J. Res. Dev. (Suppl.) 9
19. Colyer C J, Stevenson M A and Lohmann B 2009 Dynamical (e, 2e) studies using tetrahydrofuran as a DNA analogue J. Phys: Conf. Ser. 194 052022
20. Coupier B et al 2002 Inelastic interactions of protons and electrons with biologically relevant molecules Eur. Phys. J. D 20 459
21. Crothers D S F and McCann J F 1983 Ionisation of atoms by ion impact J. Phys. B: At. Mol. Phys. 16 3229
22. 2O collisions Nucl. Instrum. Methods Phys. Res. B 267 781
23. Dal Cappello C, Hervieux P-A, Charpentier I and Ruiz-López F 2008 Ionization of the cytosine molecule by protons: ab initio calculation of differential and total cross sections Phys. Rev. A 78 042702
24. Deutsch H, Becker K, Matt S and Märk T D 2000 Theoretical determination of absolute electron-impact ionization cross sections of molecules Int. J. Mass Spectrom. 197 37
25. q+ ions Eur. Phys. J. D 24 161
26. de Vries J, Hoekstra R, Morgenstern R and Schalthölter T 2003b Charge driven fragmentation of nucleobases Phys. Rev. Lett. 91 053401
27. de Vries J, Hoekstra R, Morgenstern R and Schlathölter T 2004 Ionization and fragmentation modes of nucleobases after collisions with multiply charged ions Phys. Scr. T 110 336
28. Fainstein P D, Ponce V H and Rivarola R D 1988 A theoretical model for ionization in ion-atom collisions. Application for the impact of multicharged projectiles on helium J. Phys. B: At. Mol. Opt. Phys. 21 287
29. Fainstein P D, Ponce V H and Rivarola R D 1990 Ionisation of the first excited state of hydrogen by bare ions at intermediate and high velocities J. Phys. B: At. Mol. Opt. Phys. 23 1481
30. Fainstein P D, Ponce V H and Rivarola R D 1991 Two-centre effects in ionization by ion impact J. Phys. B: At. Mol. Opt. Phys. 24 3091
31. Feil S, Gluch K, Matt-Leubner S, Scheier P, Limtrakul J, Probst M, Deutsch H, Becker K, Stamatovic A and Märk T D 2004 Partial cross sections fir positive and negative ion formation following electron impact on uracil J. Phys. B: At. Mol. Opt. Phys. 37 3013
32. Galassi M E, Rivarola R D, Beuve M, Olivera G H and Fainstein P D 2000 Theoretical calculation of single ionization in collisions between protons and low-Z molecules at intermediate and high energies Phys. Rev. A 62 022701
33. 2 molecules by ion impact Phys. Rev. A 70 032721
34. Gu J, Xie Y and Schaefer H F 2007 Electron attachment to DNA single strands: gas phase and aqueous solution Nucleic Acid Res. 35 5165
35. Heinrichs A 2009 DNA repairs: persistent breaks Nat. Rev. Mol. Cell Biol. 10 239
36. Huels M A, Hahndorf I, Illenberger E and Sanche L 1998 Resonant dissociation of DNA bases by subionization electrons J. Chem. Phys. 108 1309
37. Hunniford C A, Timson D J, Davies R J H and McCullough R W 2008 Effects of low energy carbon ions on plasmid DNA J. Phys. Conf. Ser. 101 012012
38. Kim Y K and Rudd M E 1994 Binary-encounter-dipole model for electron-impact ionization Phys. Rev. A 50 3954
39. Lacombe S, Le Sech C and Esaulov V A 2004 DNA strand breaks induced by low keV energy heavy ions Phys. Med. Biol. 49 N65
40. Lekadir H, Abbas I, Champion C, Fojón O, Rivarola R and Hanssen J 2009 Single electron loss cross sections of DNA/RNA bases impacted by energetic multi-charge ions: a classical Monte Carlo approach Phys. Rev. A 79 062710
41. Le Padellec A, Moretto-Capelle P, Richard-Viard M, Champeaux JP and Cafarelli P 2008 Ionization and fragmentation of DNA, RNA bases induced by proton impact J. Phys: Conf. Ser. 101 012007
42. 2S, and HCl. J. Chem. Phys. 40 2186
43. Moretto-Capelle P and Le Padellec A 2006 Electron spectroscopy in proton collisions with dry gas-phase uracil base Phys. Rev. A 74 062705
44. Nikjoo H and Lindborg L 2010 RBE of low energy electrons and photons Phys. Med. Biol. 55 R65
45. Olivera G H, Martinez A E, Rivarola R D and Fainstein P D 1995 Theoretical calculation of electronic stopping power of water vapor by proton impact Radiat. Res. 144 241
46. Ptasińska S, Denifl S, Scheier P and Märk T D 2004 Inelastic electron interaction (attachment/ionization) with deoxyribose J. Chem. Phys. 120 8505
47. Salin 1969 Ionization of atomic hydrogen by proton impact J. Phys. B: At. Mol. Phys. 2 631
48. Scheer A M, Mozejko P, Gallup G A and Burrow P D 2007 Total dissociative electron attachment cross sections of selected amino acids J. Chem. Phys. 126 174301
49. Schlathölter T, Alvarado F, Bari S and Hoekstra R 2006a Ion-induced ionization and fragmentation of DNA building blocks Phys. Scr. 73 C113
50. Schlathölter T, Alvarado F, Bari S, Lecointre A, Hoekstra R, Bernigaud V, Manil B, Rangama J and Huber B 2006b Ion-induced biomolecular radiation damage: from isolated nucleobases to nucleobase clusters Chem. Phys. Chem. 7 2339
51. Shafranyosh I I, Sukhoviya M I and Shafranyosh M I 2006 Absolute cross sections of positive-and negative-ion production in electron collision with cytosine molecules J. Phys. B: At. Mol. Opt. Phys. 39 4155
52. Stolterforht N, DuBois R D and Rivarola R D 1997 Electron Emission in Heavy Ion-Atom Collisions ed G Ecker, P Lambropoulos, I I Sobel'man and H Walther (Berlin: Springer)
53. Tabet J, Eden S, Feil S, Abdoul-Carime H, Farizon B, Farizon M, Ouaskit S and Märk T D 2010 Absolute total and partial cross sections for ionization of nucleobases by proton impact in the Bragg peak velocity range Phys. Rev. A 82 022703
54. Tung C J, Chan W T, Chao T C, Tu Y H and Kwei C M 2007 Inelastic interactions of low-energy electrons with biological media Nucl. Instrum. Methods Phys. Res. A 580 598
55. Vinodkumar M, Joshipura K N, Limbachiya C and Mason N 2006 Theoretical calculations of the total and ionization cross sections for electron impact on some simple biomolecules Phys. Res. A 74 022721
56. Winstead C and McKoy V 2006 Low-energy electron collisions with gas-phase uracil J. Chem. Phys. 125 174304
57. Yokoya A, Shikazono N, Fujii K, Urushibara A, Akamatsu K and Watanabe R 2008 DNA damage induced by the direct effect of radiation Radiat. Phys. Chem. 77 1280
58. Zheng Y, Wagner J R and Sanche L 2006 DNA damage induced by low-energy electrons: electron transfer and diffraction Phys. Rev. Lett. 96 208101