메뉴 건너뛰기




Volumn 26, Issue 22, 2010, Pages 2908-2909

TURNIP: Tracking unresolved nucleotide polymorphisms in large hard-to-assemble regions of repetitive DNA sequence

Author keywords

[No Author keywords available]

Indexed keywords

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 78149238569     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq557     Document Type: Article
Times cited : (3)

References (11)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped blast and PSI-BLAST: a new generation of protein database search programs
    • Altschul, S. et al. (1997) Gapped blast and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.1
  • 2
    • 55549089660 scopus 로고    scopus 로고
    • Accurate whole human genome sequencing using reversible terminator chemistry
    • Bentley, D. et al. (2008) Accurate whole human genome sequencing using reversible terminator chemistry. Nature, 456, 53-59.
    • (2008) Nature , vol.456 , pp. 53-59
    • Bentley, D.1
  • 3
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • Edgar, R. (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics, 5, 1-19.
    • (2004) BMC Bioinformatics , vol.5 , pp. 1-19
    • Edgar, R.1
  • 4
    • 10244239321 scopus 로고    scopus 로고
    • Life with 6000 genes
    • Goffeau, A. et al. (1996) Life with 6000 genes. Science, 274, 546-567.
    • (1996) Science , vol.274 , pp. 546-567
    • Goffeau, A.1
  • 5
    • 63849198290 scopus 로고    scopus 로고
    • Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing
    • James, S. et al. (2009) Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing. Genome Res., 19, 626-635.
    • (2009) Genome Res. , vol.19 , pp. 626-635
    • James, S.1
  • 6
    • 0032535478 scopus 로고    scopus 로고
    • Expansion and contraction of ribosomal DNA repeats in saccharomyces cerevisiae: requirement of replication fork blocking (FOB1) protein and the role of RNA polymerase I
    • Kobayashi, T. et al. (1998) Expansion and contraction of ribosomal DNA repeats in saccharomyces cerevisiae: requirement of replication fork blocking (FOB1) protein and the role of RNA polymerase I. Genes Dev., 12, 3821-3830.
    • (1998) Genes Dev. , vol.12 , pp. 3821-3830
    • Kobayashi, T.1
  • 7
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li, H. et al. (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res., 18, 1851-1858.
    • (2008) Genome Res. , vol.18 , pp. 1851-1858
    • Li, H.1
  • 8
    • 62649089109 scopus 로고    scopus 로고
    • Population genomics of domestic and wild yeasts
    • Liti, G. et al. (2009) Population genomics of domestic and wild yeasts. Nature, 458, 337-341.
    • (2009) Nature , vol.458 , pp. 337-341
    • Liti, G.1
  • 9
    • 0018423970 scopus 로고
    • Yeast ribosomal DNAgenes are located on chromosome-xii
    • Petes, T. (1979) Yeast ribosomal DNAgenes are located on chromosome-xii. Proc. Natl Acad.Sci. USA, 76, 410-414.
    • (1979) Proc. Natl Acad. Sci. USA , vol.76 , pp. 410-414
    • Petes, T.1
  • 10
    • 18644378331 scopus 로고    scopus 로고
    • The generic genome browser: a building block for a model organism system database
    • Stein, L. et al. (2002) The generic genome browser: a building block for a model organism system database. Genome Res., 12, 1599-1610.
    • (2002) Genome Res. , vol.12 , pp. 1599-1610
    • Stein, L.1
  • 11
    • 0037212880 scopus 로고    scopus 로고
    • TRAP: tandem repeat assembly program produces improved shotgun assemblies of repetitive sequences
    • Tammi, M. et al. (2003) TRAP: tandem repeat assembly program produces improved shotgun assemblies of repetitive sequences. Comput. Methods Programs Biomed., 70, 47-59.
    • (2003) Comput. Methods Programs Biomed. , vol.70 , pp. 47-59
    • Tammi, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.