Spoligotype-based comparative population structure analysis of multidrug-resistant and isoniazid-monoresistant Mycobacterium tuberculosis complex clinical isolates in Poland

Journal of Clinical Microbiology

Volumn 48, Issue 11, 2010, Pages 3899-3909

  Jagielski, Tomasz ^a   Augustynowicz Kopeć, Ewa ^a   Zozio, Thierry ^b   Rastogi, Nalin ^b   Zwolska, Zofia ^a  

^a NATIONAL TUBERCULOSIS AND LUNG DISEASES RESEARCH INSTITUTE   (Poland)

^b Institut Pasteur de Guadeloupe   (Guadeloupe)

Author keywords

[No Author keywords available]

Indexed keywords

ETHAMBUTOL; ISONIAZID; RIFAMPICIN; STREPTOMYCIN;

ADULT; AGED; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL STRAIN; BACTERIAL TRANSMISSION; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CZECH REPUBLIC; FEMALE; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHICAL VARIATION (SPECIES); GERMANY; HUMAN; MALE; MULTIDRUG RESISTANCE; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; POLAND; POPULATION GENETIC STRUCTURE; POPULATION STRUCTURE; PRIORITY JOURNAL; RUSSIAN FEDERATION; SWEDEN;

ADULT; AGED; ANTITUBERCULAR AGENTS; BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; DNA FINGERPRINTING; DRUG RESISTANCE, BACTERIAL; FEMALE; GENOTYPE; HUMANS; ISONIAZID; MALE; MIDDLE AGED; MOLECULAR EPIDEMIOLOGY; MYCOBACTERIUM TUBERCULOSIS; POLAND; TUBERCULOSIS;

BACILLI (CLASS); MYCOBACTERIUM TUBERCULOSIS; MYCOBACTERIUM TUBERCULOSIS COMPLEX;

EID: 78049513291     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00572-10     Document Type: Article

References (50)

1. Alland, D., G. E. Kalkut, A. R. Moss, R. A. McAdam, J. A. Hahn, W. Bosworth, E. Drucker, and B. R. Bloom. 1994. Transmission of tuberculosis in New York City. An analysis by DNA fingerprinting and conventional epidemiologic methods. N. Engl. J. Med. 330:1710-1716.
2. Almeida, D., C. Rodrigues, T. F. Ashavaid, A. Lalvani, Z. F. Udwadia, and A. Mehta. 2005. High incidence of the Beijing genotype among multidrugresistant isolates of Mycobacterium tuberculosis in a tertiary care center in Mumbai, India. Clin. Infect. Dis. 40:881-886.
3. Augustynowicz-Kopeć E., Z. Zwolska, A. Jaworski, E. Kostrzewa, and M. Klatt. 2003. Drug-resistant tuberculosis in Poland in 2000: second national survey and comparison with the 1997 survey. Int. J. Tuberc. Lung Dis. 7:645-651.
4. Augustynowicz-Kopeć, E., T. Jagielski, and Z. Zwolska. 2008. Genetic diversity of isoniazid-resistant Mycobacterium tuberculosis isolates collected in Poland and assessed by spoligotyping. J. Clin. Microbiol. 46:4041-4044.
5. Augustynowicz-Kopeć, E., T. Jagielski, M. Kozińska, A. Zabost, M. Klatt, and Z. Zwolska. 2008. Molecular analysis of drug-resistant Mycobacterium tuberculosis isolates collected in central Poland. Clin. Microbiol. Infect. 14: 605-607.
6. Bezanahary, H., M. C. Baclet, C. Sola, V. Gazaille, P. Turlure, P. Weinbreck, F. Denis, and C. Martin. 2006. Intérêt du typage moléculaire pour l'épidémiologie de la tuberculose en Limousin (1998-2006). Med. Mal. Infect. 38:309-317.
7. Borgdorff, M. W., P. de Haas, K. Kremer, and D. van Soolingen. 2003. Mycobacterium tuberculosis Beijing genotype, the Netherlands. Emerg. Infect. Dis. 9:1310-1313.
8. Brudey, K., I. Filliol, S. Ferdinand, V. Guernier, P. Duval, B. Maubert, C. Sola, and N. Rastogi. 2006. Long-term population-based genotyping study of Mycobacterium tuberculosis complex isolates in the French departments of the Americas. J. Clin. Microbiol. 44:183-191.
9. Brudey, K., J. R. Driscoll, L. Rigouts, W. M. Prodinger, A. Gori, S. A. Al-Hajoj, C. Allix, L. Aristimuño, J. Arora, V. Baumanis, L. Binder, P. Cafrune, A. Cataldi, S. Cheong, R. Diel, C. Ellermeier, J. T. Evans, M. Fauville-Dufaux, S. Ferdinand, D. Garcia de Viedma, C. Garzelli, L. Gazzola, H. M. Gomes, M. C. Guttierez, P. M. Hawkey, P. D. van Helden, G. V. Kadival, B. N. Kreiswirth, K. Kremer, M. Kubin, S. P. Kulkarni, B. Liens, T. Lillebaek, M. L. Ho, C. Martin, I. Mokrousov, O. Narvskaïa, Y. F. Ngeow, L. Naumann, S. Niemann, I. Parwati, Z. Rahim, V. Rasolofo-Razanamparany, T. Rasolonavalona, M. L. Rossetti, S. Rüsch-Gerdes, A. Sajduda, S. Samper, I. G. Shemyakin, U. B. Singh, A. Somoskovi, R. A. Skuce, D. van Soolingen, E. M. Streicher, P. N. Suffys, E. Tortoli, T. Tracevska, V. Vincent, T. C. Victor, R. M. Warren, S. F. Yap, K. Zaman, F. Portaels, N. Rastogi, and C. Sola. 2006. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol. 6:23.
10. Brudey, K., M. Gordon, P. Moström, L. Svensson, B. Jonsson, C. Sola, M. Ridell, and N. Rastogi. 2004. Molecular epidemiology of Mycobacterium tuberculosis in Western Sweden. J. Clin. Microbiol. 42:3046-3051.
11. David, S., D. R. Ribeiro, A. Antunes, C. Portugal, L. Sancho, and J. G. de Sousa. 2007. Contribution of spoligotyping to the characterization of the population structure of Mycobacterium tuberculosis isolates in Portugal. Infect. Genet. Evol. 7:609-617.
12. Dye, C., and M. A. Espinal. 2001. Will tuberculosis become resistant to all antibiotics? Proc. R. Soc. Lond. B 268:45-52.
13. European Concerted Action on New Generation Genetic Markers and Techniques for the Epidemiology and Control of Tuberculosis. 2006. Beijing/W genotype Mycobacterium tuberculosis and drug resistance. Emerg. Infect. Dis. 12:736-743.
14. EuroTB. 2006. Surveillance of tuberculosis in Europe: report on tuberculosis cases notified in 2004. EuroTB-Institut de Veille Sanitaire, Saint-Maurice, France.
15. Farnia, P., M. R. Masjedi, M. Mirsaeidi, F. Mohammadi, Jallaledin-Ghanavi, V. Vincent, M. Bahadori, and A. A. Velayati. 2006. Prevalence of Haarlem I and Beijing types of Mycobacterium tuberculosis strains in Iranian and Afghan MDR-TB patients. J. Infect. 53:331-336.
16. Faustini, A., A. J. Hall, and C. A. Perucci. 2006. Risk factors for multidrug resistant tuberculosis in Europe: a systemic review. Thorax 61:158-163.
17. Filliol, I., J. R. Driscoll, D. van Soolingen, B. N. Kreiswirth, K. Kremer, G. Valétudie, D. A. Dang, R. Barlow, D. Banerjee, P. J. Bifani, K. Brudey, A. Cataldi, R. C. Cooksey, D. V. Cousins, J. W. Dale, O. A. Dellagostin, F. Drobniewski, G. Engelmann, S. Ferdinand, D. Gascoyne-Binzi, M. Gordon, M. C. Gutierrez, W. H. Haas, H. Heersma, E. Kassa-Kelembho, M. L. Ho, A. Makristathis, C. Mammina, G. Martin, P. Moström, I. Mokrousov, V. Narbonne, O. Narvskaya, A. Nastasi, S. N. Niobe-Eyangoh, J. W. Pape, V. Rasolofo-Razanamparany, M. Ridell, M. L. Rossetti, F. Stauffer, P. N. Suffys, H. Takiff, J. Texier-Maugein, V. Vincent, J. H. de Waard, C. Sola, and N. Rastogi. 2003. Snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study. J. Clin. Microbiol. 41:1963-1970.
18. Gagneux, S., K. DeRiemer, T. Van, M. Kato-Maeda, B. C. de Jong, S. Narayanan, M. Nicol, S. Niemann, K. Kremer, M. C. Gutierrez, M. Hilty, P. C. Hopewell, and P. M. Small. 2006. Variable host-pathogen compatibility in Mycobacterium tuberculosis. Proc. Natl. Acad. Sci. U. S. A. 103:2869-2873.
19. Ghebremichael, S., R. Petersson, T. Koivula, A. Pennhag, V. Romanus, I. Berggren, B. Petrini, S. Hoffner, and G. Källenius. 2008. Molecular epidemiology of drug-resistant tuberculosis in Sweden. Microbes Infect. 10:699-705.
20. Glynn, J. R., J. Bauer, A. S. de Boer, M. W. Borgdorff, P. E. Fine, P. Godfrey-Faussett, and E. Vynnycky. 1999. Interpreting DNA fingerprint clusters of Mycobacterium tuberculosis. European Concerted Action on Molecular Epidemiology and Control of Tuberculosis. Int. J. Tuberc. Lung Dis. 3:1055-1060.
21. Glynn, J. R., J. Whiteley, P. J. Bifani, K. Kremer, and D. van Soolingen. 2002. Worldwide occurrence of Beijing/W strains of Mycobacterium tuberculosis: a systematic review. Emerg. Infect. Dis. 8:843-849.
22. Goguet de la Salmonière, Y. O., H. M. Li, G. Torrea, A. Bunschoten, J. D. A. van Embden, and B. Gicquel. 1997. Evaluation of spoligotyping in a study of the transmission of Mycobacterium tuberculosis. J. Clin. Microbiol. 35:2210-2214.
23. Gori, A., A. Bandera, G. Marchetti, A. Degli Esposti, L. Catozzi, G. P. Nardi, L. Gazzola, G. Ferrario, J. D. van Embden, D. van Soolingen, M. Moroni, and F. Franzetti. 2005. Spoligotyping and Mycobacterium tuberculosis. Emerg. Infect. Dis. 11:1242-1248.
24. Goyal, M., N. A. Saunders, J. D. A. van Embden, D. B. Young, and R. J. Shaw. 1997. Differentiation of Mycobacterium tuberculosis isolates by spoligotyping and IS6110 restriction fragment length polymorphism. J. Clin. Microbiol. 35:647-651.
25. Granich, R. M., P. Oh, B. Lewis, T. C. Porco, and J. Flood. 2005. Multidrug resistance among persons with tuberculosis in California, 1994-2003. JAMA 293:2732-2739.
26. Ignatova, A., S. Dubiley, V. Stepanshina, and I. Shemyakin. 2006. Predominance of multi-drug-resistant LAM and Beijing family strains among Mycobacterium tuberculosis isolates recovered from prison inmates in Tula Region, Russia. J. Med. Microbiol. 55:1413-1418.
27. Kamerbeek, J., L. Schouls, A. Kolk, M. van Agterveld, D. van Soolingen, S. Kuijper, A. Bunschoten, H. Molhuizen, R. Shaw, M. Goyal, and J. D. A. van Embden. 1997. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J. Clin. Microbiol. 35:907-914.
28. Ködmön, C., S. Niemann, J. Lukács, E. Sör, S. Dávid, and A. Somoskövi. 2006. Molecular epidemiology of drug-resistant tuberculosis in Hungary. J. Clin. Microbiol. 44:4258-4261.
29. Krüüner, A., S. E. Hoffner, H. Sillastu, M. Danilovits, K. Levina, S. B. Svenson, S. Ghebremichael, T. Koivula, and G. Källenius. 2001. Spread of drug-resistant pulmonary tuberculosis in Estonia. J. Clin. Microbiol. 39: 3339-3345.
30. Kubín, M., M. Havelková, I. Hyncicová, Z. Svecová, J. Kaustová, K. Kremer, and D. van Soolingen. 1999. A multidrug-resistant tuberculosis microepidemic caused by genetically closely related Mycobacterium tuberculosis strains. J. Clin. Microbiol. 37:2715-2716.
31. Lari, N., L. Rindi, D. Bonanni, N. Rastogi, C. Sola, E. Tortoli, and C. Garzelli. 2007. Three-year longitudinal study of genotypes of Mycobacterium tuberculosis isolates in Tuscany, Italy. J. Clin. Microbiol. 45:1851-1857.
32. Lillebaek, T., A. B. Andersen, A. Dirksen, J. R. Glynn, and K. Kremer. 2003. Mycobacterium tuberculosis Beijing genotype. Emerg. Infect. Dis. 9:1553-1557.
33. Lipin, M. Y., V. N. Stepanshina, I. G. Shemyakin, and T. M. Shinnick. 2007. Association of specific mutations in katG, rpoB, rpsL and rrs genes with spoligotypes of multidrug-resistant Mycobacterium tuberculosis isolates in Russia. Clin. Microbiol. Infect. 13:620-626.
34. Mardassi, H., A. Namouchi, R. Haltiti, M. Zarrouk, B. Mhenni, A. Karboul, N. Khabouchi, N. C. Gey van Pittius, E. M. Streicher, J. Rauzier, B. Gicquel, and K. Dellagi. 2005. Tuberculosis due to resistant Haarlem strain, Tunisia. Emerg. Infect. Dis. 11:957-961.
35. Murray, M., and D. Alland. 2002. Methodological problems in the molecular epidemiology of tuberculosis. Am. J. Epidemiol. 155:565-571.
36. Nivin, B., J. Driscoll, T. Glaser, P. Bifani, and S. Munsiff. 2000. Use of spoligotype analysis to detect laboratory cross-contamination. Infect. Control Hosp. Epidemiol. 21:525-527.
37. Ritacco, V., M. Di Lonardo, A. Reniero, M. Ambroggi, L. Barrera, A. Dambrosi, B. Lopez, N. Isola, and I. N. de Kantor. 1997. Nosocomial spread of human immunodeficiency virus-related multidrug-resistant tuberculosis in Buenos Aires. J. Infect. Dis. 176:637-642.
38. Sajduda, A., A. Brzostek, M. Popławska, N. Rastogi, C. Sola, E. Augustynowicz- Kopeć, Z. Zwolska, J. Dziadek, and F. Portaels. 2004. Molecular epidemiology of drug-resistant Mycobacterium tuberculosis strains isolated from patients with pulmonary tuberculosis in Poland: a 1-year study. Int. J. Tuberc. Lung Dis. 8:1448-1457.
39. Samper, S., M. J. Iglesias, M. J. Rabanaque, L. I. Gómez, M. C. Lafoz, M. S. Jiménez, A. Ortega, M. A. Lezcano, D. van Soolingen, C. Martín, and the Spanish Working Group on MDR-TB. 2005. Systematic molecular characterization of multidrug-resistant Mycobacterium tuberculosis complex isolates from Spain. J. Clin. Microbiol. 43:1220-1227.
40. Sola, C., A. Devallois, L. Horgen, J. Maïsetti, I. Filliol, E. Legrand, and N. Rastogi. 1999. Tuberculosis in the Caribbean: using spacer oligonucleotide typing to understand strain origin and transmission. Emerg. Infect. Dis. 5:404-414.
41. Sola, C., I. Filliol, M. C. Gutierrez, I. Mokrousov, V. Vincent, and N. Rastogi. 2001. Spoligotype database of Mycobacterium tuberculosis: biogeographic distribution of shared types and epidemiologic and phylogenetic perspectives. Emerg. Infect. Dis. 7:390-396.
42. Sreevatsan, S., X. Pan, K. E. Stockbauer, N. D. Connell, B. N. Kreiswirth, T. S. Whittam, and J. M. Musser. 1997. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc. Natl. Acad. Sci. U. S. A. 94:9869-9874.
43. Szczuka, I. 2005. Incidence of tuberculosis in Poland 2004 and its trends. Pneumonol. Alergol. Pol. 73:221-227.
44. Toungoussova, O. S., P. Sandven, A. O. Mariandyshev, N. I. Nizovtseva, G. Bjune, and D. A. Caugant. 2002. Spread of drug-resistant Mycobacterium tuberculosis strains of the Beijing genotype in the Archangel Oblast, Russia. J. Clin. Microbiol. 40:1930-1937.
45. Tracevska, T., I. Jansone, V. Baumanis, O. Marga, and T. Lillebaek. 2003. Prevalence of Beijing genotype in Latvian multidrug-resistant Mycobacterium tuberculosis isolates. Int. J. Tuberc. Lung Dis. 7:1097-1103.
46. van Doorn, H. R., P. E. de Haas, K. Kremer, C. M. Vandenbroucke-Grauls, M. W. Borgdorff, and D. van Soolingen. 2006. Public health impact of isoniazid-resistant Mycobacterium tuberculosis strains with a mutation at amino-acid position 315 of katG: a decade of experience in the Netherlands. Clin. Microbiol. Infect. 12:769-775.
47. van Embden, J. D. A., M. D. Cave, J. T. Crawford, J. W. Dale, K. D. Eisenach, B. Gicquel, P. Hermans, C. Martin, R. McAdam, T. M. Schinnick, and P. M. Small. 1993. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J. Clin. Microbiol. 31:406-409.
48. van Soolingen, D., M. W. Borgdorff, P. E. de Haas, M. M. Sebek, J. Veen, M. Dessens, K. Kremer, and J. D. van Embden. 1999. Molecular epidemiology of tuberculosis in the Netherlands: a nationwide study from 1993 through 1997. J. Infect. Dis. 180:726-736.
49. World Health Organization and International Union against Tuberculosis and Lung Disease. 2008. The WHO/IUATLD Global Project on Anti-Tuberculosis Drug Resistance Surveillance, 2002-2007: anti-tuberculosis drug resistance in the world, 4th global report. WHO/HTM/TB/2008.394. WHO, Geneva, Switzerland.
50. World Health Organization. 2006. Global tuberculosis control: surveillance, planning, financing. WHO, Geneva, Switzerland.