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Volumn 5, Issue 8, 2010, Pages

Presaging critical residues in protein interfaces-web server (PCRPi-W): A web server to chart Hot spots in protein interfaces

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BAYES THEOREM; COMPUTER PROGRAM; CONTROLLED STUDY; DRUG DESIGN; HOT SPOT; PREDICTION; PROTEIN INTERACTION; PROTEIN STRUCTURE; WEB SERVER;

EID: 78049492156     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0012352     Document Type: Article
Times cited : (23)

References (19)
  • 1
    • 0030028728 scopus 로고    scopus 로고
    • Principles of protein-protein interactions
    • Jones S, Thornton JM (1996) Principles of protein-protein interactions. ProcNatlAcadSciUSA 93: 13.
    • (1996) ProcNatlAcadSciUSA , vol.93 , pp. 13
    • Jones, S.1    Thornton, J.M.2
  • 2
    • 0003187567 scopus 로고    scopus 로고
    • The atomic structure of protein-protein recognition sites
    • Lo Conte L, Chothia C, Janin J (1999) The atomic structure of protein-protein recognition sites. JMolBiol 285: 2177.
    • (1999) JMolBiol , vol.285 , pp. 2177
    • Lo Conte, L.1    Chothia, C.2    Janin, J.3
  • 3
    • 37249004920 scopus 로고    scopus 로고
    • Reaching for high-hanging fruit in drug discovery at protein-protein interfaces
    • Wells JA, McClendon CL (2007) Reaching for high-hanging fruit in drug discovery at protein-protein interfaces. Nature 450: 1001-1009.
    • (2007) Nature , vol.450 , pp. 1001-1009
    • Wells, J.A.1    McClendon, C.L.2
  • 4
    • 0028916599 scopus 로고
    • A Hot Spot of Binding Energy in a Hormone- Receptor Interface
    • Clackson T, Wells JA (1995) A Hot Spot of Binding Energy in a Hormone- Receptor Interface. Science 267: 383-386.
    • (1995) Science , vol.267 , pp. 383-386
    • Clackson, T.1    Wells, J.A.2
  • 5
    • 0026350498 scopus 로고
    • Systematic mutational analyses of protein-protein interfaces
    • Wells JA (1991) Systematic mutational analyses of protein-protein interfaces. Methods Enzymol 202: 390-411.
    • (1991) Methods Enzymol , vol.202 , pp. 390-411
    • Wells, J.A.1
  • 6
    • 0028580678 scopus 로고
    • Dissecting the energetics of an antibody-antigen interface by alanine shaving and molecular grafting
    • Jin L, Wells JA (1994) Dissecting the energetics of an antibody-antigen interface by alanine shaving and molecular grafting. Protein Sci 3: 2351-2357.
    • (1994) Protein Sci , vol.3 , pp. 2351-2357
    • Jin, L.1    Wells, J.A.2
  • 7
    • 77951273638 scopus 로고    scopus 로고
    • PCRPi: Presaging Critical Residues in Protein interfaces, a new computational tool to chart hot spots in protein interfaces
    • Assi SA, Tanaka T, Rabbitts TH, Fernandez-Fuentes N (2009) PCRPi: Presaging Critical Residues in Protein interfaces, a new computational tool to chart hot spots in protein interfaces. Nucleic Acids Res 38(6): e86.
    • (2009) Nucleic Acids Res , vol.38 , Issue.6
    • Assi, S.A.1    Tanaka, T.2    Rabbitts, T.H.3    Fernandez-Fuentes, N.4
  • 9
    • 56349095598 scopus 로고    scopus 로고
    • SCWRL and MolIDE: Computer programs for side-chain conformation prediction and homology modeling
    • Wang Q, Canutescu AA, Dunbrack RL, Jr. (2008) SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling. Nat Protoc 3: 1832-1847.
    • (2008) Nat Protoc , vol.3 , pp. 1832-1847
    • Wang, Q.1    Canutescu, A.A.2    Dunbrack Jr., R.L.3
  • 10
    • 84875658949 scopus 로고    scopus 로고
    • last accessed 2010
    • http://www.pymol.org/ (last accessed 2010).
  • 12
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 13
    • 0036469060 scopus 로고    scopus 로고
    • Unraveling hot spots in binding interfaces: Progress and challenges
    • DeLano WL (2002) Unraveling hot spots in binding interfaces: progress and challenges. Curr Opin Struct Biol 12: 14-20.
    • (2002) Curr Opin Struct Biol , vol.12 , pp. 14-20
    • Delano, W.L.1
  • 16
    • 34447340960 scopus 로고    scopus 로고
    • Tumour prevention by a single antibody domain targeting the interaction of signal transduction proteins with RAS
    • Tanaka T, Williams RL, Rabbitts TH (2007) Tumour prevention by a single antibody domain targeting the interaction of signal transduction proteins with RAS. EMBO J 26: 3250-3259.
    • (2007) EMBO J , vol.26 , pp. 3250-3259
    • Tanaka, T.1    Williams, R.L.2    Rabbitts, T.H.3
  • 17
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt KD, Tatusova T, Maglott DR (2007) NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 35: D61-65.
    • (2007) Nucleic Acids Res , vol.35
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 18
    • 66349094681 scopus 로고    scopus 로고
    • Identification of computational hot spots in protein interfaces: Combining solvent accessibility and inter-residue potentials improves the accuracy
    • Tuncbag N, Gursoy A, Keskin O (2009) Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. Bioinformatics 25: 1513-1520.
    • (2009) Bioinformatics , vol.25 , pp. 1513-1520
    • Tuncbag, N.1    Gursoy, A.2    Keskin, O.3
  • 19
    • 0036291145 scopus 로고    scopus 로고
    • Predicting changes in the stability of proteins and protein complexes: A study of more than 1000 mutations
    • Guerois R, Nielsen JE, Serrano L (2002) Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. J Mol Biol 320: 369-387.
    • (2002) J Mol Biol , vol.320 , pp. 369-387
    • Guerois, R.1    Nielsen, J.E.2    Serrano, L.3


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