MicroRNAs control intestinal epithelial differentiation, architecture, and barrier function

Gastroenterology

Volumn 139, Issue 5, 2010, Pages

  McKenna, Lindsay B ^a   Schug, Jonathan ^a   Vourekas, Anastassios ^a   McKenna, Jaime B ^a   Bramswig, Nuria C ^a   Friedman, Joshua R ^a   Kaestner, Klaus H ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

Epithelial Barrier Function; Intestinal Epithelium; MicroRNA; miRNA

Indexed keywords

DICER; MESSENGER RNA; MICRORNA; TRANSCRIPTOME;

ANIMAL EXPERIMENT; ANIMAL MODEL; APOPTOSIS; ARTICLE; CELL DIFFERENTIATION; CELL INFILTRATION; CELL MIGRATION; CONTROLLED STUDY; CRYPT CELL; CYTOARCHITECTURE; DNA CROSS LINKING; ENTERITIS; GENE EXPRESSION; GENE TARGETING; GOBLET CELL; HOMEOSTASIS; IMMUNOPRECIPITATION; INTESTINE EPITHELIUM; INTESTINE MUCOSA; JEJUNUM; LYMPHOCYTE; MAMMAL; MOUSE; MOUSE MUTANT; NEUTROPHIL; NONHUMAN; PRIORITY JOURNAL; RNA PROCESSING; RNA SEQUENCE;

EID: 78049468823     PISSN: 00165085     EISSN: None     Source Type: Journal    
DOI: 10.1053/j.gastro.2010.07.040     Document Type: Article

References (33)

1. D. Bartel MicroRNAs: target recognition and regulatory functions Cell 136 2009 215 233
2. B.P. Lewis, C.B. Burge, and D.P. Bartel Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets Cell 120 2005 15 20
3. D. Bartel MicroRNAs: genomics, biogenesis, mechanism, and function Cell 116 2004 281 297
4. B.S. Cobb, T.B. Nesterova, and E. Thompson T-cell lineage choice and differentiation in the absence of the RNase III enzyme Dicer J Exp Med 201 2005 1367 1373
5. N.J. Hand, Z.R. Master, and J. Le Lay Hepatic function is preserved in the absence of mature microRNAs Hepatology 49 2009 618 626
6. S. Sekine, R. Ogawa, and R. Ito Disruption of Dicer1 induces dysregulated fetal gene expression and promotes hepatocarcinogenesis Gastroenterology 136 2009 2304 2315
7. Y. Akao, Y. Nakagawa, and T. Naoe let-7 microRNA functions as a potential growth supressor in human colon cancer cells Biol Pharm Bull 29 2006 903 906
8. F. Wu, M. Zikusoka, and A. Trindade MicroRNAs are differentially expressed in ulcerative colitis and alter expression of macrophage inflammatory peptide-2a Gastroenterology 135 2008 1624 1635
9. P. Landgraf, M. Rusu, and R. Sheridan A mammalian microRNA expression atlas based on small RNA library sequencing Cell 129 2007 1401 1414
10. J.M. Cummins, Y. He, and R.J. Leary The colorectal microRNAome Proc Natl Acad Sci U S A 103 2006 3687 3692
11. B.B. Madison, L. Dunbar, and X.T. Qiao Cis elements of the villin gene control expression in restricted domains of the vertical (crypt) and horizontal (duodenum, cecum) axes of the intestine J Biol Chem 277 2002 33275 33283
12. R.K. Gupta, N. Gao, and R.K. Gorski Expansion of adult β-cell mass in response to increased metabolic demand is dependent on HNF-4α Genes Dev 21 2007 756 769
13. N. Gao, J. Le Lay, and M.Z. Vatamaniuk Dynamic regulation of Pdx1 enhancers by Foxa1 and Foxa2 is essential for pancreas development Genes Dev 22 2008 3435 3448
14. R.C.V. Gentleman, W. Huber, and R. Irizarry Bioinformatics and computational biology solutions using R and Bioconductor 2005 Springer New York, NY 55 66
15. V.G. Tusher, R. Tibshirani, and G. Chu Significance analysis of microarrays applied to the ionizing radiation response Proc Natl Acad Sci U S A 98 2001 5116 5121
16. S. Griffiths-Jones, H.K. Saini, and S. van Dongen miRbase: tools for microRNA genomics Nucelic Acids Res 36 2003 D154 D158
17. S.W. Chi, J.B. Zang, and A. Mele Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps Nature 460 2009 479 486
18. K. Hino, T. Fukao, and M. Watanabe Regulatory interaction of HNF-1a to microRNA-194 gene during intestinal epithelial cell differentiation Nucleic Acids Symp Ser 51 2007 415 416
19. P.A. Gregory, A.G. Bert, and E.L. Paterson The miR-200 family and miR-205 regulate epithelial to mesenchymal transition by targeting ZEB1 and SIP1 Nat Cell Biol 10 2008 593 601
20. V.K. Mootha, C.M. Lindgren, and K.F. Eriksson PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately down-regulated in human diabetes Nat Genet 34 2003 267 273
21. S. Travis, and I. Menzies Intestinal permeability: functional assessment and significance Clin Sci (Lond) 1992 471 488
22. J.P. Katz, N. Perreault, and B.G. Goldstein The zinc-finger transcription factor Klf4 is required for terminal differentiation of goblet cells in the colon Development 129 2002 2619 2628
23. K. Menzel, M. Hausmann, and F. Obermeier Cathepsins B, L, and D in inflammatory bowel disease macrophages and potential therapeutic effects of cathepsin inhibition in vivo Clin Exp Immunol 146 2006 169 180
24. S.P. Hogan, L. Seidu, and C. Blanchard Resistin-like molecule β regulates innate colonic function: barrier integrity and inflammation susceptibility J Allergy Clin Immunol 118 2006 257 268
25. M. Gironella, J.L. Iovanna, and M. Sans Anti-inflammatory effects of pancreatitis associated protein in inflammatory bowel disease Gut 54 2005 1244 1253
26. D. Artis, M.L. Wang, and S.A. Keilbaugh RELMβ/FIZZ2 is a goblet cell-specific immune-effector molecule in the gastrointestinal tract Proc Natl Acad Sci U S A 101 2004 13596 13600
27. D.L. van den Berg, T. Snoek, and N.P. Mullin An Oct4-centered protein interaction network in embryonic stem cells Cell Stem Cell 6 2010 329 381
28. D.X. Nguyen, A.C. Chiang, and X.H. Zhang WNT/TCF signaling through LEF1 and HOXB9 mediates lung adenocarcinoma metastasis Cell 138 2009 51 62
29. N. Oshima, S. Ishihara, and M.A. Rumi A20 is an early responding negative regulator of Toll-like receptor 5 signalling in intestinal epithelial cells during inflammation Clin Exp Immunol 159 2010 185 198
30. T. Yamada, C.S. Park, and M. Mamonkin Transcription factor ELF4 controls the proliferation and homing of CD8+ T cells via the Krppel-like factors KLF4 and KLF2 Nat Immunol 10 2009 618 626
31. Y. Liu, C.V. Hedvat, and S. Mao The ETS protein MEF is regulated by phosphorylation-dependent proteolysis via the protein-ubiquitin ligase SCFSkp2 Mol Cell Biol 26 2006 3114 3123
32. V. Vanhorenbeeck, M. Jenny, and J.F. Cornut Role of the Onecut transcription factors in pancreas morphogenesis and in pancreatic and enteric endocrine differentiation Dev Biol 305 2007 685 694
33. A. Simion, I. Laudadio, and P.P. Prvot miR-495 and miR-218 regulate the expression of the Onecut transcription factors HNF-6 and OC-2 Biochem Biophys Res Commun 301 2010 293 298