Detection of somaclonal variation by random amplified polymorphic DNA analysis during micropropagation of phalaenopsis bellina (Rchb.f.) christenson

African Journal of Biotechnology

Volumn 9, Issue 40, 2010, Pages 6632-6639

  Khoddamzadeh, A A ^a   Sinniah, U R ^a   Kadir, M A ^a   Kadzimin, S B ^a   Mahmood, M ^a   Sreeramanan, S ^b  

^a UNIVERSITY PUTRA MALAYSIA   (Malaysia)

^b SCHOOL OF PHYSICS   (Malaysia)

Author keywords

Moth orchid; Protocorm like bodies; Random amplified polymorphic DNA; Somaclonal variation

Indexed keywords

ARTICLE; CONTROLLED STUDY; GENETIC SIMILARITY; GENETIC STABILITY; MICROPROPAGATION; NONHUMAN; ORCHIDACEAE; PHALAENOPSIS BELLINA; PLANT GROWTH; PLANT TISSUE CULTURE; PROTOCORM LIKE BODY; RANDOM AMPLIFIED POLYMORPHIC DNA; SOMACLONAL VARIATION;

ORCHIDACEAE; PHALAENOPSIS; PHALAENOPSIS BELLINA;

EID: 78049465770     PISSN: 16845315     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (38)

1. Alou AH, Azaiez MJ, Belzile FJ (2004). Involvement of the Arabidopsis thaliana AtPMS1 gene in somatic repeat instability. Plant Mol. Biol. 56: 339-349.
2. Bajaj YPS (1990). Somaclonal variation-origin, induction, cryopreservation, and implications in plant breeding. In: Bajaj YPS (ed). Biotechnology in agriculture and forestry, vol. 2: somaclonal variation in crop improvement I. Springer, Berlin Heidelberg New York. pp. 3-48.
3. Chen JT, Chang WC (2004). Induction of repetitive embryogenesis from seed-derived protocorms of Phalaenopsis amabilis var. formosa Shimadzu. In Vitro Cell. Dev. Biol. 40: 290-293.
4. Chen WH, Chen TM, Fu YM, Hsieh RM, Chen WS (1998). Studies on somaclonal variation in Phalaenopsis. Plant Cell Rep. 18: 7-13.
5. Christenson EA (2001). Ecology and distribution Phalaenopsis a monograph. Portland: Timber Press.
6. Damasco OP, Graham GC, Henry RJ, Adkins SW, Godwin ID (1996). Random amplified polymorphic DNA (RAPD) detection of dwarf off- types in micropropagated Cavendish (Musa spp. AAA) bananas. Plant Cell Rep. 16: 118-123.
7. Devarumath RM, Nandy S, Ravi V, Marimuthu S, Muraleedharan N, Raina SN (2002). RAPD ISSR and RFLP fingerprints as useful markers to evaluate genetic integrity of micropropagated plants of three diploid and triploid elite tea clones representing Camellia sinensis (China type) and C. assamica ssp. Assamica (Assam-India type). Plant Cell Rep. 21: 166-173.
8. Doyle JJ, Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus, 12: 13-15.
9. Gimenez C, Garcia ED, Enrech NXD, Blanca I (2001). Somaclonal variation in banana: cytogenetic and molecular characterization of somaclonal variant CIEN BTA-03. In Vitro Cell Dev. Biol. Plant, 37: 217-222.
10. Hirochika H (1993). Activation of tobacco retrotransposons during tissue further culture. EMBO J. 12: 2521-2528.
11. Hsiao YY, Tsai WC, Kuoh CS, Huang TH, Wang HC, Wu TS, Leu YL, Chen WH, Chen HH (2006). Comparison of transcripts in Phalaenopsis bellina and Phalaenopsis equestris (Orchidaceae) flowers to deduce monoterpene biosynthesis pathway. BMC Plant Biol. 6: 14.
12. Isabel N, Bovin R, Levassevr C, Charest PM, Bousquet J, Tremblay FM (1996). Occurrence of somaclonal variation among somatic embryo- derived white spruce (Picea glauca, Pinaceae). Am. J. Bot. 83: 1121-1130.
13. Islam MO, Rahman ARMM, Matsui S, Prodhan AKMA (2003). Effects of complex organic extracts on callus growth and PLB regeneration through embryogenesis in the Doritaenopsis orchid. Japan Agric. Res. Quart. 37(4): 229-235.
14. Jaligot E, Beule T, Rival A (2002). Methylation- sensitive RFLPs Characterisation of two oil palm markers showing somaclonal variation-associated polymorphism. Theor. Appl. Genet. 104: 1263-1269.
15. Jaligot E, Rival A, Beule T, Dussert S, Verdeil JL (2000). Somaclonal variation in oil palm (Elaeis guineensis Jacq.): the DNA methylation hypothesis. Plant Cell Rep. 7: 684-690.
16. Kubis SE, Castilho AM, Vershinin AV, Heslop-Harrison JS (2003). Retroelements, transposons and methylation status in the genome of oil palm (Elaeis guineensis) and the relationship to somaclonal variation. Plant Mol. Biol. 52: 69-79.
17. Larkin PJ, Scowcroft WR (1981). Somaclonal variation- a novel source of variability from cell cultures for plant improvement. Theor. Appl. Genet. 60: 197-214.
18. Li A, Luo YB, Xiong ZT, Song GE (2002). A preliminary study on conservation genetics of three endangered orchid species. Acta Bot. Sin. 44: 250-252.
19. Modgil M, Mahajan K, Chakrabarti SK (2004). Molecular analysis of genetic stability in micropropagated apple rootstock MM106. Sci. Horticult. 104(2005): 151-160.
20. Munthali MJ, Newburg HJ, Lioyd F (1996). The detection of somaclonal variation of beet using RAPD. Plant Cell Rep. 15: 474-478.
21. Murashige T, Skoog F (1962). A revised medium for rapid growth and bioassay with tobacco tissue culture. Physiol. Plant, 15: 473-497.
22. Price Z, Dumortier F, MacDonald W, Mayes S (2002). Characterisation of copia-like retrotransposons in oil palm (Elaeis guineensis Jacq.). Theor. Appl. Genet. 104: 860-867.
23. Rajeswari S, Thirugnanakumar S, Anandan A, Krishnamurthi M (2009). Somaclonal variation in sugarcane through tissue culture and evaluation for quantitative and quality traits. Euphytica, 168: p. 1.
24. Rani V, Parida A, Raina SN (1995). Random amplified polymorphic DNA (RAPD) markers for genetic analysis in micropropagated plants of Populus deltoides Marsh. Plant Cell Rep. 14: 459-462.
25. Reuveni O, Israeli Y, Degani H, Eshdat Y (1986). Genetic variability in banana plants multiplied via in vitro techniques. In: International board for plant genetic resources meeting, Rome. Resumos. Rome: IBPGR, p. 36.
26. Rival A, Bertrand L, Beale T, Combes MC, Touslot P, Leshermes P (1998). Suitability of RAPD analysis for detection of somaclonal variation in oil palm (Elaeis guineensis Jacq.). Plant Breed. 117: 73-76.
27. Rohlf FJ (1993). NTSYS-pc, Numerical Taxonomy and Multivariate Analysis System. Version 1.80. Exeter Software: Setauket, NY.
28. Sheidai M, Aminpoor H, Noormohammadi Z, Farahanei F (2008). RAPD analysis of somaclonal variation in banana (Musa acuminate L.) cultivar Valery. Acta Biol. Szeged, 52(2): 307-311
29. Sheidai M, Yahyazadeh, Farahanei F, Noormohammadi Z (2008). Genetic and morphological variations induced by tissue culture in tetraploid cotton (Gossypium hirsutum L.) Acta Biol. Szeged, 52(1): 33-38.
30. Shen XL, Chen JJ, Kane ME, Henry RJ (2007). Assessment of somaclonal variation in Dieffenbachia plants regenerated through indirect shoot organogenesis. Plant Cell, Tissue Organ Cult. 91: p. 1.
31. Sneath PHA, Sokal RR (1973). A statistical method for evaluation systematic relationships. University Kansas Sci. Bull. 38: 1409-1438.
32. Soniya EV, Banerjee NS, Das MR (2001). Genetic analysis of somaclonal variation among callus-derived plants of tomato. Curr. Sci. 80: 1213-1215.
33. Sun M, Wong KC (2001). Genetic structure of three orchid species with contrasting breeding systems using RAPD and allozyme markers. Am. J. Bot. 88: 2180-2188.
34. Teob ES (1989). Orchids of Asia. Singapore: Times Books International. pp. 125-134.
35. Tokuhara K, Mii M (1993). Micropropagation of Phalaenopsis and Doritaenopsis by culturing shoot tips of flower stalk buds. Plant Cell Rep. 13: 7-11.
36. Tokuhara K (1992). Somaclonal variation of flowers in micropropagated plants through flower stalk bud culture. In: Ichihashi S, Nagata H (eds). Proc Nagoya Int Orchid Show 92, Nagoya, Japan, pp. 317-319.
37. Tokuhara K, Mii M (2003). Highly-efficient somatic embryogenesis from cell suspension cultures of Phalaenopsis orchids by adjusting carbohydrate sources. In Vitro Cell. Dev. Biol. 39: 635-639.
38. William JGK, Kubelik AR, Livak KJ (1990). Polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535.