-
1
-
-
62149130752
-
Exposure to sediment enhances primary acquisition of Symbiodinium by asymbiotic coral larvae
-
Adams LM, Cumbo VR, Takabayashi M (2009) Exposure to sediment enhances primary acquisition of Symbiodinium by asymbiotic coral larvae. Mar Ecol Prog Ser 377: 149-156.
-
(2009)
Mar Ecol Prog Ser
, vol.377
, pp. 149-156
-
-
Adams, L.M.1
Cumbo, V.R.2
Takabayashi, M.3
-
2
-
-
34250788243
-
Traditional microalgae isolation techniques
-
R. A. Andersen (Ed.), Hong Kong: Academic Press
-
Andersen RA, Kawachi M (2005) Traditional microalgae isolation techniques. In: Andersen RA (ed) Algal culture techniques. Academic Press, Hong Kong, pp 83-100.
-
(2005)
Algal Culture Techniques
, pp. 83-100
-
-
Andersen, R.A.1
Kawachi, M.2
-
3
-
-
0034492205
-
Conspecificity and Indo-Pacific distribution of Symbiodinium genotypes (Dinophyceae) from giant clams
-
Baillie BK, Belda-Baillie CA, Maruyama T (2000) Conspecificity and Indo-Pacific distribution of Symbiodinium genotypes (Dinophyceae) from giant clams. J Phycol 36: 1153-1161.
-
(2000)
J Phycol
, vol.36
, pp. 1153-1161
-
-
Baillie, B.K.1
Belda-Baillie, C.A.2
Maruyama, T.3
-
4
-
-
0032727278
-
Phylogenetic position of Symbiodinium (Dinophyceae) isolates from tridacnids (Bivalvia), cardiids (Bivalvia), a sponge (Porifera), a soft coral (Anthozoa), and a free-living strain
-
Carlos AA, Baillie BK, Kawachi M, Maruyama T (1999) Phylogenetic position of Symbiodinium (Dinophyceae) isolates from tridacnids (Bivalvia), cardiids (Bivalvia), a sponge (Porifera), a soft coral (Anthozoa), and a free-living strain. J Phycol 35: 1054-1062.
-
(1999)
J Phycol
, vol.35
, pp. 1054-1062
-
-
Carlos, A.A.1
Baillie, B.K.2
Kawachi, M.3
Maruyama, T.4
-
5
-
-
33751438997
-
Environmental populations of symbiotic dinoflagellates in the genus Symbiodinium can initiate symbiosis with reef cnidarians
-
Coffroth MA, Lewis CL, Santos SR, Weaver JL (2006) Environmental populations of symbiotic dinoflagellates in the genus Symbiodinium can initiate symbiosis with reef cnidarians. Curr Biol 16: R985-R988.
-
(2006)
Curr Biol
, vol.16
-
-
Coffroth, M.A.1
Lewis, C.L.2
Santos, S.R.3
Weaver, J.L.4
-
6
-
-
59449091103
-
Understanding diversity in coral-algal symbiosis: a cluster-based approach to interpreting fine-scale genetic variation in the genus Symbiodinium
-
Correa AMS, Baker AC (2009) Understanding diversity in coral-algal symbiosis: a cluster-based approach to interpreting fine-scale genetic variation in the genus Symbiodinium. Coral Reefs 28: 81-93.
-
(2009)
Coral Reefs
, vol.28
, pp. 81-93
-
-
Correa, A.M.S.1
Baker, A.C.2
-
7
-
-
33750978418
-
Patterns of association between Symbiodinium and members of the Montastraea annularis species complex on spatial scales ranging from within colonies to between geographic regions
-
Garren M, Walsh SM, Caccone A, Knowlton N (2006) Patterns of association between Symbiodinium and members of the Montastraea annularis species complex on spatial scales ranging from within colonies to between geographic regions. Coral Reefs 25: 503-512.
-
(2006)
Coral Reefs
, vol.25
, pp. 503-512
-
-
Garren, M.1
Walsh, S.M.2
Caccone, A.3
Knowlton, N.4
-
8
-
-
0142020819
-
Phylogenetic analysis of a free-living strain of Symbiodinium isolated from Jiaozhou Bay, P.R. China
-
Gou WL, Sun J, Li XQ, Zhen Y, Xin Z, Yu ZG, Li RX (2003) Phylogenetic analysis of a free-living strain of Symbiodinium isolated from Jiaozhou Bay, P. R. China. J Exp Mar Biol Ecol 296: 135-144.
-
(2003)
J Exp Mar Biol Ecol
, vol.296
, pp. 135-144
-
-
Gou, W.L.1
Sun, J.2
Li, X.Q.3
Zhen, Y.4
Xin, Z.5
Yu, Z.G.6
Li, R.X.7
-
9
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biol 52: 696-704.
-
(2003)
Systematic Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
10
-
-
46649113104
-
Phylogenetic analyses of potentially free-living Symbiodinium spp. from coral reef sand in Okinawa, Japan
-
Hirose M, Reimer JD, Hidaka M, Suda S (2008) Phylogenetic analyses of potentially free-living Symbiodinium spp. from coral reef sand in Okinawa, Japan. Mar Biol 155: 105-112.
-
(2008)
Mar Biol
, vol.155
, pp. 105-112
-
-
Hirose, M.1
Reimer, J.D.2
Hidaka, M.3
Suda, S.4
-
11
-
-
33846909074
-
Structure and evolution of the rDNA internal transcribed spacer (ITS) region 2 in the symbiotic dinoflagellates (Symbiodinium, Dinophyta)
-
Hunter RL, LaJeunesse TC, Santos SR (2007) Structure and evolution of the rDNA internal transcribed spacer (ITS) region 2 in the symbiotic dinoflagellates (Symbiodinium, Dinophyta). J Phycol 43: 120-128.
-
(2007)
J Phycol
, vol.43
, pp. 120-128
-
-
Hunter, R.L.1
Lajeunesse, T.C.2
Santos, S.R.3
-
12
-
-
77954202143
-
NIES-collection, list of strains, 8th edn
-
Kasai F, Kawachi M, Erata M, Mori F, Yumoto K, Sto M, Ishimoto M (2009) NIES-collection, list of strains, 8th edn. Jpn J Phycol 57(SUPPL): 1-350.
-
(2009)
Jpn J Phycol
, vol.57
, Issue.SUPPL.
, pp. 1-350
-
-
Kasai, F.1
Kawachi, M.2
Erata, M.3
Mori, F.4
Yumoto, K.5
Sto, M.6
Ishimoto, M.7
-
13
-
-
62149141260
-
A quantitative real-time PCR method for monitoring Symbiodinium in the water column
-
Koike K, Yamashita H, Oh-Uchi A, Tamaki M, Hayashibara T (2007) A quantitative real-time PCR method for monitoring Symbiodinium in the water column. Galaxea JCRS 9: 1-12.
-
(2007)
Galaxea JCRS
, vol.9
, pp. 1-12
-
-
Koike, K.1
Yamashita, H.2
Oh-Uchi, A.3
Tamaki, M.4
Hayashibara, T.5
-
14
-
-
0034761933
-
Investigating the biodiversity, ecology, and phylogeny of endosymbiotic dinoflagellates of the genus Symbiodinium using the ITS region: in search of a 'species' level marker
-
LaJeunesse TC (2001) Investigating the biodiversity, ecology, and phylogeny of endosymbiotic dinoflagellates of the genus Symbiodinium using the ITS region: in search of a 'species' level marker. J Phycol 37: 866-880.
-
(2001)
J Phycol
, vol.37
, pp. 866-880
-
-
Lajeunesse, T.C.1
-
15
-
-
0036944045
-
Diversity and community structure of symbiotic dinoflagellates from Caribbean coral reefs
-
LaJeunesse TC (2002) Diversity and community structure of symbiotic dinoflagellates from Caribbean coral reefs. Mar Biol 141: 387-400.
-
(2002)
Mar Biol
, vol.141
, pp. 387-400
-
-
Lajeunesse, T.C.1
-
16
-
-
14544306214
-
"Species" radiations of symbiotic dinoflagellates in the Atlantic and Indo-Pacific since the Miocene-Pliocene transition
-
LaJeunesse TC (2005) "Species" radiations of symbiotic dinoflagellates in the Atlantic and Indo-Pacific since the Miocene-Pliocene transition. Mol Biol Evol 22: 570-581.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 570-581
-
-
Lajeunesse, T.C.1
-
17
-
-
0141540390
-
Low symbiont diversity in southern Great Barrier Reef corals, relative to those of the Caribbean
-
LaJeunesse TC, Loh WKW, van Woesik R, Hoegh-Guldberg O, Schmidt GW, Fitt WK (2003) Low symbiont diversity in southern Great Barrier Reef corals, relative to those of the Caribbean. Limnol Oceanogr 48: 2046-2054.
-
(2003)
Limnol Oceanogr
, vol.48
, pp. 2046-2054
-
-
Lajeunesse, T.C.1
Loh, W.K.W.2
van Woesik, R.3
Hoegh-Guldberg, O.4
Schmidt, G.W.5
Fitt, W.K.6
-
18
-
-
12344304652
-
Closely-related Symbiodinium spp. differ in relative dominance in coral reef host communities across environmental, latitudinal, and biogeographic gradients
-
LaJeunesse TC, Bhagooli R, Hidaka M, deVantier L, Done T, Schmidt GW, Fitt WK, Hoegh-Guldberg O (2004) Closely-related Symbiodinium spp. differ in relative dominance in coral reef host communities across environmental, latitudinal, and biogeographic gradients. Mar Ecol Prog Ser 284: 147-161.
-
(2004)
Mar Ecol Prog Ser
, vol.284
, pp. 147-161
-
-
Lajeunesse, T.C.1
Bhagooli, R.2
Hidaka, M.3
Devantier, L.4
Done, T.5
Schmidt, G.W.6
Fitt, W.K.7
Hoegh-Guldberg, O.8
-
19
-
-
0029136832
-
Could foraminiferal Symbiodinium be derived from environmental pools contributed to by different coelenterate hosts?
-
Lee JJ, Wray CG, Lawrence C (1995) Could foraminiferal Symbiodinium be derived from environmental pools contributed to by different coelenterate hosts? Acta Protozool 34: 75-85.
-
(1995)
Acta Protozool
, vol.34
, pp. 75-85
-
-
Lee, J.J.1
Wray, C.G.2
Lawrence, C.3
-
20
-
-
50049117183
-
Methods for sampling free-living Symbiodinium (zooxanthellae) and their distribution and abundance at Lizard Island (Great Barrier Reef)
-
Littman RA, van Oppen MJH, Willis BL (2008) Methods for sampling free-living Symbiodinium (zooxanthellae) and their distribution and abundance at Lizard Island (Great Barrier Reef). J Exp Mar Biol Ecol 364: 48-53.
-
(2008)
J Exp Mar Biol Ecol
, vol.364
, pp. 48-53
-
-
Littman, R.A.1
van Oppen, M.J.H.2
Willis, B.L.3
-
21
-
-
52149089833
-
Diversity in populations of free-living Symbiodinium from a Caribbean and Pacific reef
-
Manning MM, Gates RD (2008) Diversity in populations of free-living Symbiodinium from a Caribbean and Pacific reef. Limnol Oceanogr 53: 1853-1861.
-
(2008)
Limnol Oceanogr
, vol.53
, pp. 1853-1861
-
-
Manning, M.M.1
Gates, R.D.2
-
22
-
-
38549136465
-
On dinoflagellate phylogeny and classification
-
J. Brodie and J. Lewis (Eds.), Boca Raton: CRC Press
-
Moestrup O, Daugbjerg N (2007) On dinoflagellate phylogeny and classification. In: Brodie J, Lewis J (eds) Unravelling the algae: the past, present, and future of algae systematics. CRC Press, Boca Raton, pp 215-230.
-
(2007)
Unravelling the Algae: The past, Present, and Future of Algae Systematics
, pp. 215-230
-
-
Moestrup, O.1
Daugbjerg, N.2
-
24
-
-
0035005111
-
Molecular identification of algal endosymbionts in large miliolid Foraminifera: 2. Dinoflagellates
-
Pawlowski J, Holzmann M, Fahrni JF, Pochon X, Lee JJ (2001) Molecular identification of algal endosymbionts in large miliolid Foraminifera: 2. Dinoflagellates. J Eukaryot Microbiol 48: 368-373.
-
(2001)
J Eukaryot Microbiol
, vol.48
, pp. 368-373
-
-
Pawlowski, J.1
Holzmann, M.2
Fahrni, J.F.3
Pochon, X.4
Lee, J.J.5
-
25
-
-
0035688587
-
High genetic diversity and relative specificity among Symbiodinium-like endosymbiotic dinoflagellates in soritid foraminiferans
-
Pochon X, Pawlowski J, Zaninetti L, Rowan RG (2001) High genetic diversity and relative specificity among Symbiodinium-like endosymbiotic dinoflagellates in soritid foraminiferans. Mar Biol 139: 1069-1078.
-
(2001)
Mar Biol
, vol.139
, pp. 1069-1078
-
-
Pochon, X.1
Pawlowski, J.2
Zaninetti, L.3
Rowan, R.G.4
-
26
-
-
11244305473
-
Biogeographic partitioning and host specialization among foraminiferan dinoflagellate symbionts (Symbiodinium; Dinophyta)
-
Pochon X, LaJeunesse TC, Pawlowski J (2004) Biogeographic partitioning and host specialization among foraminiferan dinoflagellate symbionts (Symbiodinium; Dinophyta). Mar Biol 146: 17-27.
-
(2004)
Mar Biol
, vol.146
, pp. 17-27
-
-
Pochon, X.1
Lajeunesse, T.C.2
Pawlowski, J.3
-
27
-
-
47749118791
-
Macroalgal-associated dinoflagellates belonging to the genus Symbiodinium in Caribbean reefs
-
Porto I, Granados C, Restropo JC, Sanchez JA (2008) Macroalgal-associated dinoflagellates belonging to the genus Symbiodinium in Caribbean reefs. PLoS One 3: e2160.
-
(2008)
PLoS One
, vol.3
-
-
Porto, I.1
Granados, C.2
Restropo, J.C.3
Sanchez, J.A.4
-
28
-
-
78049478785
-
Preliminary molecular examination of zooxanthellate zoanthid (Hexacorallia, Zoantharia) and associated zooxanthellae (Symbiodinium spp.) diversity in Singapore
-
Reimer JD, Todd PA (2009) Preliminary molecular examination of zooxanthellate zoanthid (Hexacorallia, Zoantharia) and associated zooxanthellae (Symbiodinium spp.) diversity in Singapore. Raffles Bull Zool Suppl 22: 103-120.
-
(2009)
Raffles Bull Zool
, Issue.SUPPL. 22
, pp. 103-120
-
-
Reimer, J.D.1
Todd, P.A.2
-
29
-
-
33744479387
-
Latitudinal and intracolony ITS-rDNA sequence variation in the symbiotic dinoflagellate genus Symbiodinium (Dinophyceae) in Zoanthus sansibaricus (Anthozoa: Hexacorallia)
-
Reimer JD, Takishita K, Ono S, Maruyama T, Tsukahara J (2006) Latitudinal and intracolony ITS-rDNA sequence variation in the symbiotic dinoflagellate genus Symbiodinium (Dinophyceae) in Zoanthus sansibaricus (Anthozoa: Hexacorallia). Phycol Res 54: 122-132.
-
(2006)
Phycol Res
, vol.54
, pp. 122-132
-
-
Reimer, J.D.1
Takishita, K.2
Ono, S.3
Maruyama, T.4
Tsukahara, J.5
-
31
-
-
0041386108
-
Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP (2003) Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxford) 19: 1572-1574.
-
(2003)
Bioinformatics (Oxford)
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
32
-
-
0028902078
-
Intraspecific diversity and ecological zonation in coral-algal symbiosis
-
Rowan R, Knowlton N (1995) Intraspecific diversity and ecological zonation in coral-algal symbiosis. Proc Natl Acad Sci USA 92: 2850-2853.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 2850-2853
-
-
Rowan, R.1
Knowlton, N.2
-
33
-
-
70349847397
-
Bleaching response of corals and their Symbiodinium communities in southern Africa
-
Ruiz Sebastian C, Sink KJ, McClanahan TR, Cowan DA (2009) Bleaching response of corals and their Symbiodinium communities in southern Africa. Mar Biol 156: 2049-2062.
-
(2009)
Mar Biol
, vol.156
, pp. 2049-2062
-
-
Ruiz Sebastian, C.1
Sink, K.J.2
McClanahan, T.R.3
Cowan, D.A.4
-
34
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
35
-
-
0034752450
-
Genetic comparisons of freshly isolated versus cultured symbiotic dinoflagellates: implications for extrapolating to the intact symbiosis
-
Santos SR, Taylor DJ, Coffroth MA (2001) Genetic comparisons of freshly isolated versus cultured symbiotic dinoflagellates: implications for extrapolating to the intact symbiosis. J Phycol 37: 900-912.
-
(2001)
J Phycol
, vol.37
, pp. 900-912
-
-
Santos, S.R.1
Taylor, D.J.2
Coffroth, M.A.3
-
36
-
-
0035983962
-
Molecular phylogeny of symbiotic dinoflagellates inferred from partial chloroplast large subunit (23S)-rDNA sequences
-
Santos SR, Taylor DJ, Kinzie RAIII, Hidaka M, Sakai K, Coffroth MA (2002) Molecular phylogeny of symbiotic dinoflagellates inferred from partial chloroplast large subunit (23S)-rDNA sequences. Mol Phylogenet Evol 23: 97-111.
-
(2002)
Mol Phylogenet Evol
, vol.23
, pp. 97-111
-
-
Santos, S.R.1
Taylor, D.J.2
Kinzie, R.A.I.I.I.3
Hidaka, M.4
Sakai, K.5
Coffroth, M.A.6
-
37
-
-
0348226830
-
Molecular characterization of nuclear small subunit (18S)-rDNA pseudogenes in a symbiotic dinoflagellate (Symbiodinium, Dinophyta)
-
Santos SR, Kinzie RA III, Sakai K, Coffroth MA (2003) Molecular characterization of nuclear small subunit (18S)-rDNA pseudogenes in a symbiotic dinoflagellate (Symbiodinium, Dinophyta). J Eukaryot Microbiol 50: 417-421.
-
(2003)
J Eukaryot Microbiol
, vol.50
, pp. 417-421
-
-
Santos, S.R.1
Kinzie III, R.A.2
Sakai, K.3
Coffroth, M.A.4
-
38
-
-
78049478962
-
-
PAUP* 4. 0b7a, Phylogenetic analysis using parsimony (*and other methods). Sinauer, Sunderland
-
Swofford D (2000) PAUP* 4. 0b7a, Phylogenetic analysis using parsimony (*and other methods). Sinauer, Sunderland.
-
(2000)
-
-
Swofford, D.1
-
39
-
-
33645227135
-
Acquiring scanning electron microscopical, light microscopical, and multiple gene sequence data from a single dinoflagelate cell
-
Takano Y, Horiguchi T (2005) Acquiring scanning electron microscopical, light microscopical, and multiple gene sequence data from a single dinoflagelate cell. J Phycol 42: 251-256.
-
(2005)
J Phycol
, vol.42
, pp. 251-256
-
-
Takano, Y.1
Horiguchi, T.2
-
40
-
-
37249027666
-
Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates
-
Thornhill DJ, LaJeunesse TC, Santos SR (2007) Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates. Mol Ecol 16: 5326-5340.
-
(2007)
Mol Ecol
, vol.16
, pp. 5326-5340
-
-
Thornhill, D.J.1
Lajeunesse, T.C.2
Santos, S.R.3
-
41
-
-
0035543253
-
Zooxanthellae of the Montastraea annularis species complex: patterns of distribution of four taxa of Symbiodinium on different reefs and across depths
-
Toller WW, Rowan R, Knowlton N (2001) Zooxanthellae of the Montastraea annularis species complex: patterns of distribution of four taxa of Symbiodinium on different reefs and across depths. Biol Bull 201: 348-359.
-
(2001)
Biol Bull
, vol.201
, pp. 348-359
-
-
Toller, W.W.1
Rowan, R.2
Knowlton, N.3
-
42
-
-
34347251919
-
-
Tsuchiya M, Nadaoka K, Kayanne H, Yamano H (eds), Ministry of the Environment, Tokyo
-
Tsuchiya M, Nadaoka K, Kayanne H, Yamano H (eds) (2004) Coral reefs of Japan. Ministry of the Environment, Tokyo.
-
(2004)
Coral reefs of Japan
-
-
|