-
1
-
-
77952938726
-
Global dynamics of proteins: Bridging between structure and function
-
Bahar I, Lezon TR, Yang LW, Eyal E (2010) Global dynamics of proteins: bridging between structure and function. Annu Rev Biophys 39: 23-42.
-
(2010)
Annu Rev Biophys
, vol.39
, pp. 23-42
-
-
Bahar, I.1
Lezon, T.R.2
Yang, L.W.3
Eyal, E.4
-
2
-
-
64849101493
-
Protein dynamism and evolvability
-
Tokuriki N, Tawfik DS (2009) Protein dynamism and evolvability. Science 324: 203-207.
-
(2009)
Science
, vol.324
, pp. 203-207
-
-
Tokuriki, N.1
Tawfik, D.S.2
-
3
-
-
0032489016
-
The Hsp70 and Hsp60 chaperone machines
-
Bukau B, Horwich AL (1998) The Hsp70 and Hsp60 chaperone machines. Cell 92: 351-366.
-
(1998)
Cell
, vol.92
, pp. 351-366
-
-
Bukau, B.1
Horwich, A.L.2
-
5
-
-
0037040541
-
Molecular chaperones in the cytosol: From nascent chain to folded protein
-
Hartl FU, Hayer-Hartl M (2002) Molecular chaperones in the cytosol: from nascent chain to folded protein. Science 295: 1852-1858.
-
(2002)
Science
, vol.295
, pp. 1852-1858
-
-
Hartl, F.U.1
Hayer-Hartl, M.2
-
6
-
-
17044387386
-
Hsp70 chaperones: Cellular functions and molecular mechanism
-
Mayer MP, Bukau B (2005) Hsp70 chaperones: cellular functions and molecular mechanism. Cell Mol Life Sci 62: 670-684.
-
(2005)
Cell Mol Life Sci
, vol.62
, pp. 670-684
-
-
Mayer, M.P.1
Bukau, B.2
-
7
-
-
66849143696
-
Converging concepts of protein folding in vitro and in vivo
-
Hartl FU, Hayer-Hartl M (2009) Converging concepts of protein folding in vitro and in vivo. Nat Struct Mol Biol 16: 574-581.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 574-581
-
-
Hartl, F.U.1
Hayer-Hartl, M.2
-
8
-
-
33646847503
-
The diverse roles of J-proteins, the obligate Hsp70 co-chaperone
-
Craig EA, Huang P, Aron R, Andrew A (2006) The diverse roles of J-proteins, the obligate Hsp70 co-chaperone. Rev Physiol Biochem Pharmacol 156: 1-21.
-
(2006)
Rev Physiol Biochem Pharmacol
, vol.156
, pp. 1-21
-
-
Craig, E.A.1
Huang, P.2
Aron, R.3
Andrew, A.4
-
9
-
-
67650151030
-
Structural and functional diversity among eukaryotic Hsp70 nucleotide exchange factors
-
Kabani M (2009) Structural and functional diversity among eukaryotic Hsp70 nucleotide exchange factors. Protein Pept Lett 16: 623-660.
-
(2009)
Protein Pept Lett
, vol.16
, pp. 623-660
-
-
Kabani, M.1
-
10
-
-
0030936995
-
Crystal structure of the nucleotide exchange factor GrpE bound to the ATPase domain of the molecular chaperone DnaK
-
Harrison CJ, Hayer Hartl M, DiLiberto M, Hartl FU, Kuriyan J (1997) Crystal structure of the nucleotide exchange factor GrpE bound to the ATPase domain of the molecular chaperone DnaK. Science 276: 431-435.
-
(1997)
Science
, vol.276
, pp. 431-435
-
-
Harrison, C.J.1
Hayer Hartl, M.2
DiLiberto, M.3
Hartl, F.U.4
Kuriyan, J.5
-
11
-
-
0344443774
-
BAG-1-a nucleotide exchange factor of Hsc70 with multiple cellular functions
-
Alberti S, Esser C, Hohfeld J (2003) BAG-1-a nucleotide exchange factor of Hsc70 with multiple cellular functions. Cell Stress Chaperones 8: 225-231.
-
(2003)
Cell Stress Chaperones
, vol.8
, pp. 225-231
-
-
Alberti, S.1
Esser, C.2
Hohfeld, J.3
-
12
-
-
0038482018
-
HspBP1, an Hsp70 cochaperone, has two structural domains and is capable of altering the conformation of the Hsp70 ATPase domain
-
McLellan CA, Raynes DA, Guerriero V (2003) HspBP1, an Hsp70 cochaperone, has two structural domains and is capable of altering the conformation of the Hsp70 ATPase domain. J Biol Chem 278: 19017-19022.
-
(2003)
J Biol Chem
, vol.278
, pp. 19017-19022
-
-
McLellan, C.A.1
Raynes, D.A.2
Guerriero, V.3
-
13
-
-
44049083594
-
Hsp110 is a nucleotide-activated exchange factor for Hsp70
-
Andreasson C, Fiaux J, Rampelt H, Mayer MP, Bukau B (2008) Hsp110 is a nucleotide-activated exchange factor for Hsp70. J Biol Chem 283: 8877-8884.
-
(2008)
J Biol Chem
, vol.283
, pp. 8877-8884
-
-
Andreasson, C.1
Fiaux, J.2
Rampelt, H.3
Mayer, M.P.4
Bukau, B.5
-
14
-
-
38549146894
-
The Pfam protein families database
-
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, et al. (2008) The Pfam protein families database. Nucleic Acids Res 36: D281-D288.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
Coggill, P.C.4
Sammut, S.J.5
-
15
-
-
0028938819
-
How potassium affects the activity of the molecular chaperone Hsc70. II. Potassium binds specifically in the ATPase active site
-
Wilbanks SM, McKay DB (1995) How potassium affects the activity of the molecular chaperone Hsc70. II. Potassium binds specifically in the ATPase active site. J Biol Chem 270: 2251-2257.
-
(1995)
J Biol Chem
, vol.270
, pp. 2251-2257
-
-
Wilbanks, S.M.1
McKay, D.B.2
-
16
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith TF, Waterman MS (1981) Identification of common molecular subsequences. J Mol Biol 147: 195-197.
-
(1981)
J Mol Biol
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
17
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Res 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
-
18
-
-
0035936826
-
Structure of a Bag/Hsc70 complex: Convergent functional evolution of Hsp70 nucleotide exchange factors
-
Sondermann H, Scheufler C, Schneider C, Hohfeld J, Hartl FU, et al. (2001) Structure of a Bag/Hsc70 complex: convergent functional evolution of Hsp70 nucleotide exchange factors. Science 291: 1553-1557.
-
(2001)
Science
, vol.291
, pp. 1553-1557
-
-
Sondermann, H.1
Scheufler, C.2
Schneider, C.3
Hohfeld, J.4
Hartl, F.U.5
-
19
-
-
13244278043
-
Regulation of Hsp70 function by HspBP1: Structural analysis reveals an alternate mechanism for Hsp70 nucleotide exchange
-
Shomura Y, Dragovic Z, Chang HC, Tzvetkov N, Young JC, et al. (2005) Regulation of Hsp70 function by HspBP1: structural analysis reveals an alternate mechanism for Hsp70 nucleotide exchange. Mol Cell 17: 367-379.
-
(2005)
Mol Cell
, vol.17
, pp. 367-379
-
-
Shomura, Y.1
Dragovic, Z.2
Chang, H.C.3
Tzvetkov, N.4
Young, J.C.5
-
20
-
-
44649110104
-
Structural basis for the cooperation of Hsp70 and Hsp110 chaperones in protein folding
-
Polier S, Dragovic Z, Hartl FU, Bracher A (2008) Structural basis for the cooperation of Hsp70 and Hsp110 chaperones in protein folding. Cell 133: 1068-1079.
-
(2008)
Cell
, vol.133
, pp. 1068-1079
-
-
Polier, S.1
Dragovic, Z.2
Hartl, F.U.3
Bracher, A.4
-
21
-
-
0031569356
-
Human Hsp70 molecular chaperone binds two calcium ions within the ATPase domain
-
Sriram M, Osipiuk J, Freeman B, Morimoto R, Joachimiak A (1997) Human Hsp70 molecular chaperone binds two calcium ions within the ATPase domain. Structure 5: 403-414.
-
(1997)
Structure
, vol.5
, pp. 403-414
-
-
Sriram, M.1
Osipiuk, J.2
Freeman, B.3
Morimoto, R.4
Joachimiak, A.5
-
22
-
-
0030623823
-
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential
-
Bahar I, Atilgan AR, Erman B (1997) Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential. Fold Des 2: 173-181.
-
(1997)
Fold Des
, vol.2
, pp. 173-181
-
-
Bahar, I.1
Atilgan, A.R.2
Erman, B.3
-
23
-
-
33747829284
-
oGNM: Online computation of structural dynamics using the Gaussian Network Model
-
Yang LW, Rader AJ, Liu X, Jursa CJ, Chen SC, et al. (2006) oGNM: online computation of structural dynamics using the Gaussian Network Model. Nucleic Acids Res 34: W24-W31.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Yang, L.W.1
Rader, A.J.2
Liu, X.3
Jursa, C.J.4
Chen, S.C.5
-
24
-
-
0035132230
-
Anisotropy of fluctuation dynamics of proteins with an elastic network model
-
Atilgan AR, Durell SR, Jernigan RL, Demirel MC, Keskin O, et al. (2001) Anisotropy of fluctuation dynamics of proteins with an elastic network model. Biophys J 80: 505-515.
-
(2001)
Biophys J
, vol.80
, pp. 505-515
-
-
Atilgan, A.R.1
Durell, S.R.2
Jernigan, R.L.3
Demirel, M.C.4
Keskin, O.5
-
25
-
-
33750407288
-
Anisotropic network model: Systematic evaluation and a new web interface
-
Eyal E, Yang LW, Bahar I (2006) Anisotropic network model: systematic evaluation and a new web interface. Bioinformatics 22: 2619-2627.
-
(2006)
Bioinformatics
, vol.22
, pp. 2619-2627
-
-
Eyal, E.1
Yang, L.W.2
Bahar, I.3
-
26
-
-
66249135330
-
Allosteric transitions of supramolecular systems explored by network models: Application to chaperonin GroEL
-
Yang Z, Majek P, Bahar I (2009) Allosteric transitions of supramolecular systems explored by network models: application to chaperonin GroEL. PLoS Comput Biol 5: e1000360.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Yang, Z.1
Majek, P.2
Bahar, I.3
-
27
-
-
84893482610
-
A solution for the best rotation to relate two sets of vectors
-
Kabsch W (1976) A solution for the best rotation to relate two sets of vectors. Acta Crystallogr A 32: 922-923.
-
(1976)
Acta Crystallogr A
, vol.32
, pp. 922-923
-
-
Kabsch, W.1
-
28
-
-
0029913807
-
An evolutionary trace method defines binding surfaces common to protein families
-
Lichtarge O, Bourne HR, Cohen FE (1996) An evolutionary trace method defines binding surfaces common to protein families. J Mol Biol 257: 342-358.
-
(1996)
J Mol Biol
, vol.257
, pp. 342-358
-
-
Lichtarge, O.1
Bourne, H.R.2
Cohen, F.E.3
-
29
-
-
0036468670
-
Evolutionary predictions of binding surfaces and interactions
-
Lichtarge O, Sowa ME (2002) Evolutionary predictions of binding surfaces and interactions. Curr Opin Struct Biol 12: 21-27.
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 21-27
-
-
Lichtarge, O.1
Sowa, M.E.2
-
30
-
-
0034459679
-
Evolutionary trace analysis of TGF-beta and related growth factors: Implications for site-directed mutagenesis
-
Innis CA, Shi J, Blundell TL (2000) Evolutionary trace analysis of TGF-beta and related growth factors: implications for site-directed mutagenesis. Protein Eng 13: 839-847.
-
(2000)
Protein Eng
, vol.13
, pp. 839-847
-
-
Innis, C.A.1
Shi, J.2
Blundell, T.L.3
-
31
-
-
0037423759
-
An accurate, sensitive, and scalable method to identify functional sites in protein structures
-
Yao H, Kristensen DM, Mihalek I, Sowa ME, Shaw C, et al. (2003) An accurate, sensitive, and scalable method to identify functional sites in protein structures. J Mol Biol 326: 255-261.
-
(2003)
J Mol Biol
, vol.326
, pp. 255-261
-
-
Yao, H.1
Kristensen, D.M.2
Mihalek, I.3
Sowa, M.E.4
Shaw, C.5
-
32
-
-
2542445427
-
ConSurf: Identification of functional regions in proteins by surface-mapping of phylogenetic information
-
Glaser F, Pupko T, Paz I, Bell RE, Bechor-Shental D, et al. (2003) ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information. Bioinformatics 19: 163-164.
-
(2003)
Bioinformatics
, vol.19
, pp. 163-164
-
-
Glaser, F.1
Pupko, T.2
Paz, I.3
Bell, R.E.4
Bechor-Shental, D.5
-
33
-
-
0032711731
-
Analysis of heregulin symmetry by weighted evolutionary tracing
-
Landgraf R, Fischer D, Eisenberg D (1999) Analysis of heregulin symmetry by weighted evolutionary tracing. Protein Eng 12: 943-951.
-
(1999)
Protein Eng
, vol.12
, pp. 943-951
-
-
Landgraf, R.1
Fischer, D.2
Eisenberg, D.3
-
34
-
-
0036300444
-
Structural clusters of evolutionary trace residues are statistically significant and common in proteins
-
Madabushi S, Yao H, Marsh M, Kristensen DM, Philippi A, et al. (2002) Structural clusters of evolutionary trace residues are statistically significant and common in proteins. J Mol Biol 316: 139-154.
-
(2002)
J Mol Biol
, vol.316
, pp. 139-154
-
-
Madabushi, S.1
Yao, H.2
Marsh, M.3
Kristensen, D.M.4
Philippi, A.5
-
35
-
-
0028295169
-
Correlated mutations and residue contacts in proteins
-
Gobel U, Sander C, Schneider R, Valencia A (1994) Correlated mutations and residue contacts in proteins. Proteins 18: 309-317.
-
(1994)
Proteins
, vol.18
, pp. 309-317
-
-
Gobel, U.1
Sander, C.2
Schneider, R.3
Valencia, A.4
-
36
-
-
0028084754
-
Can 3-Dimensional Contacts in Protein Structures be Predicted by Analysis of Correlated Mutations
-
Shindyalov IN, Kolchanov NA, Sander C (1994) Can 3-Dimensional Contacts in Protein Structures be Predicted by Analysis of Correlated Mutations. Protein Eng 7: 349-358.
-
(1994)
Protein Eng
, vol.7
, pp. 349-358
-
-
Shindyalov, I.N.1
Kolchanov, N.A.2
Sander, C.3
-
37
-
-
0033977832
-
Correlations among amino acid sites in bHLH protein domains: An information theoretic analysis
-
Atchley WR, Wollenberg KR, Fitch WM, Terhalle W, Dress AW (2000) Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis. Mol Biol Evol 17: 164-178.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 164-178
-
-
Atchley, W.R.1
Wollenberg, K.R.2
Fitch, W.M.3
Terhalle, W.4
Dress, A.W.5
-
38
-
-
0033536602
-
Evolutionarily conserved pathways of energetic connectivity in protein families
-
Lockless SW, Ranganathan R (1999) Evolutionarily conserved pathways of energetic connectivity in protein families. Science 286: 295-299.
-
(1999)
Science
, vol.286
, pp. 295-299
-
-
Lockless, S.W.1
Ranganathan, R.2
-
39
-
-
0028832687
-
Covariation of Residues in the Homeodomain Sequence Family
-
Clarke ND (1995) Covariation of Residues in the Homeodomain Sequence Family. Protein Sci 4: 2269-2278.
-
(1995)
Protein Sci
, vol.4
, pp. 2269-2278
-
-
Clarke, N.D.1
-
40
-
-
0141571239
-
Covariation of amino acid positions in HIV-1 protease
-
Hoffman NG, Schiffer CA, Swanstrom R (2003) Covariation of amino acid positions in HIV-1 protease. Virology 314: 536-548.
-
(2003)
Virology
, vol.314
, pp. 536-548
-
-
Hoffman, N.G.1
Schiffer, C.A.2
Swanstrom, R.3
-
41
-
-
27944458910
-
Using information theory to search for co-evolving residues in proteins
-
Martin LC, Gloor GB, Dunn SD, Wahl LM (2005) Using information theory to search for co-evolving residues in proteins. Bioinformatics 21: 4116-4124.
-
(2005)
Bioinformatics
, vol.21
, pp. 4116-4124
-
-
Martin, L.C.1
Gloor, G.B.2
Dunn, S.D.3
Wahl, L.M.4
-
42
-
-
20444409186
-
Coupling between catalytic site and collective dynamics: A requirement for mechanochemical activity of enzymes
-
Yang LW, Bahar I (2005) Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes. Structure 13: 893-904.
-
(2005)
Structure
, vol.13
, pp. 893-904
-
-
Yang, L.W.1
Bahar, I.2
-
43
-
-
0033642945
-
Structural stability of binding sites: Consequences for binding affinity and allosteric effects
-
Luque I, Freire E (2000) Structural stability of binding sites: consequences for binding affinity and allosteric effects. Proteins Suppl 4: 63-71.
-
(2000)
Proteins Suppl
, vol.4
, pp. 63-71
-
-
Luque, I.1
Freire, E.2
-
44
-
-
34250745809
-
Compensating enthalpic and entropic changes hinder binding affinity optimization
-
Lafont V, Armstrong AA, Ohtaka H, Kiso Y, Mario AL, et al. (2007) Compensating enthalpic and entropic changes hinder binding affinity optimization. Chem Biol Drug Des 69: 413-422.
-
(2007)
Chem Biol Drug Des
, vol.69
, pp. 413-422
-
-
Lafont, V.1
Armstrong, A.A.2
Ohtaka, H.3
Kiso, Y.4
Mario, A.L.5
-
45
-
-
84873054389
-
Toward understanding allosteric signaling mechanisms in the ATPase domain of molecular chaperones
-
Liu Y, Bahar I (2010) Toward understanding allosteric signaling mechanisms in the ATPase domain of molecular chaperones. Pac Symp Biocomput. pp 269-280.
-
(2010)
Pac Symp Biocomput
, pp. 269-280
-
-
Liu, Y.1
Bahar, I.2
-
46
-
-
12944331889
-
Small-world network approach to identify key residues in protein-protein interaction
-
del SA, O'Meara P (2005) Small-world network approach to identify key residues in protein-protein interaction. Proteins 58: 672-682.
-
(2005)
Proteins
, vol.58
, pp. 672-682
-
-
del, S.A.1
O'Meara, P.2
-
47
-
-
33745461893
-
Residues crucial for maintaining short paths in network communication mediate signaling in proteins
-
del Sol A, Fujihashi H, Amoros D, Nussinov R (2006) Residues crucial for maintaining short paths in network communication mediate signaling in proteins. Mol Syst Biol 2: 2006.0019.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 20060019
-
-
del Sol, A.1
Fujihashi, H.2
Amoros, D.3
Nussinov, R.4
-
48
-
-
45849091944
-
Structure of the Hsp110: Hsc70 Nucleotide Exchange Machine
-
Schuermann JP, Jiang J, Cuellar J, Llorca O, Wang L, et al. (2008) Structure of the Hsp110:Hsc70 Nucleotide Exchange Machine. Mol Cell 31: 232-243.
-
(2008)
Mol Cell
, vol.31
, pp. 232-243
-
-
Schuermann, J.P.1
Jiang, J.2
Cuellar, J.3
Llorca, O.4
Wang, L.5
-
49
-
-
30044434744
-
Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state
-
Tobi D, Bahar I (2005) Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state. Proc Natl Acad Sci U S A 102: 18908-18913.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 18908-18913
-
-
Tobi, D.1
Bahar, I.2
-
50
-
-
48249097986
-
Intrinsically disordered proteins in human diseases: Introducing the D2 concept
-
Uversky VN, Oldfield CJ, Dunker AK (2008) Intrinsically disordered proteins in human diseases: introducing the D2 concept. Annu Rev Biophys 37: 215-246.
-
(2008)
Annu Rev Biophys
, vol.37
, pp. 215-246
-
-
Uversky, V.N.1
Oldfield, C.J.2
Dunker, A.K.3
-
52
-
-
64649089001
-
Allostery in Hsp70 chaperones is transduced by subdomain rotations
-
Bhattacharya A, Kurochkin AV, Yip GN, Zhang Y, Bertelsen EB, et al. (2009) Allostery in Hsp70 chaperones is transduced by subdomain rotations. J Mol Biol 388: 475-490.
-
(2009)
J Mol Biol
, vol.388
, pp. 475-490
-
-
Bhattacharya, A.1
Kurochkin, A.V.2
Yip, G.N.3
Zhang, Y.4
Bertelsen, E.B.5
-
53
-
-
31544442176
-
Allosteric regulation of Hsp70 chaperones by a proline switch
-
Vogel M, Bukau B, Mayer MP (2006) Allosteric regulation of Hsp70 chaperones by a proline switch. Mol Cell 21: 359-367.
-
(2006)
Mol Cell
, vol.21
, pp. 359-367
-
-
Vogel, M.1
Bukau, B.2
Mayer, M.P.3
-
54
-
-
0035041855
-
Tuning of chaperone activity of Hsp70 proteins by modulation of nucleotide exchange
-
Brehmer D, Rudiger S, Gassler CS, Klostermeier D, Packschies L, et al. (2001) Tuning of chaperone activity of Hsp70 proteins by modulation of nucleotide exchange. Nat Struct Biol 8: 427-432.
-
(2001)
Nat Struct Biol
, vol.8
, pp. 427-432
-
-
Brehmer, D.1
Rudiger, S.2
Gassler, C.S.3
Klostermeier, D.4
Packschies, L.5
-
55
-
-
68749107059
-
Protein sectors: Evolutionary units of three-dimensional structure
-
Halabi N, Rivoire O, Leibler S, Ranganathan R (2009) Protein sectors: evolutionary units of three-dimensional structure. Cell 138: 774-786.
-
(2009)
Cell
, vol.138
, pp. 774-786
-
-
Halabi, N.1
Rivoire, O.2
Leibler, S.3
Ranganathan, R.4
-
56
-
-
20844452182
-
Detection and reduction of evolutionary noise in correlated mutation analysis
-
Noivirt O, Eisenstein M, Horovitz A (2005) Detection and reduction of evolutionary noise in correlated mutation analysis. Protein Eng 18: 247-253.
-
(2005)
Protein Eng
, vol.18
, pp. 247-253
-
-
Noivirt, O.1
Eisenstein, M.2
Horovitz, A.3
-
58
-
-
0033550256
-
Effective use of sequence correlation and conservation in fold recognition
-
Olmea O, Rost B, Valencia A (1999) Effective use of sequence correlation and conservation in fold recognition. J Mol Biol 293: 1221-1239.
-
(1999)
J Mol Biol
, vol.293
, pp. 1221-1239
-
-
Olmea, O.1
Rost, B.2
Valencia, A.3
-
59
-
-
0027764344
-
Protein sequence alignments: A strategy for the hierarchical analysis of residue conservation
-
Livingstone CD, Barton GJ (1993) Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation. Comput Appl Biosci 9: 745-756.
-
(1993)
Comput Appl Biosci
, vol.9
, pp. 745-756
-
-
Livingstone, C.D.1
Barton, G.J.2
-
60
-
-
0026687729
-
An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins
-
Bork P, Sander C, Valencia A (1992) An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins. Proc Natl Acad Sci U S A 89: 7290-7294.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 7290-7294
-
-
Bork, P.1
Sander, C.2
Valencia, A.3
-
61
-
-
77957274298
-
An Interdomain Sector Mediating Allostery in Hsp70 Molecular Chaperones
-
(in press)
-
Smock RG, Rivoire O, Russ WP, Swain JF, Leibler S, et al. (2010) An Interdomain Sector Mediating Allostery in Hsp70 Molecular Chaperones. Nat Struct Mol Biol, (in press).
-
(2010)
Nat Struct Mol Biol
-
-
Smock, R.G.1
Rivoire, O.2
Russ, W.P.3
Swain, J.F.4
Leibler, S.5
-
62
-
-
45849131354
-
Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution
-
Lange OF, Lakomek NA, Fares C, Schroder GF, Walter KF, et al. (2008) Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution. Science 320: 1471-1475.
-
(2008)
Science
, vol.320
, pp. 1471-1475
-
-
Lange, O.F.1
Lakomek, N.A.2
Fares, C.3
Schroder, G.F.4
Walter, K.F.5
-
63
-
-
36849048228
-
Intrinsic motions along an enzymatic reaction trajectory
-
Henzler-Wildman KA, Thai V, Lei M, Ott M, Wolf-Watz M, et al. (2007) Intrinsic motions along an enzymatic reaction trajectory. Nature 450: 838-844.
-
(2007)
Nature
, vol.450
, pp. 838-844
-
-
Henzler-Wildman, K.A.1
Thai, V.2
Lei, M.3
Ott, M.4
Wolf-Watz, M.5
-
64
-
-
70149090164
-
The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding
-
Bakan A, Bahar I (2009) The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding. Proc Natl Acad Sci U S A 106: 14349-14354.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 14349-14354
-
-
Bakan, A.1
Bahar, I.2
-
65
-
-
36549043024
-
Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation
-
Bahar I, Chennubhotla C, Tobi D (2007) Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation. Curr Opin Struct Biol 17: 633-640.
-
(2007)
Curr Opin Struct Biol
, vol.17
, pp. 633-640
-
-
Bahar, I.1
Chennubhotla, C.2
Tobi, D.3
-
66
-
-
32344434479
-
The changing landscape of protein allostery
-
Swain JF, Gierasch LM (2006) The changing landscape of protein allostery. Curr Opin Struct Biol 16: 102-108.
-
(2006)
Curr Opin Struct Biol
, vol.16
, pp. 102-108
-
-
Swain, J.F.1
Gierasch, L.M.2
-
67
-
-
64849111005
-
Sending signals dynamically
-
Smock RG, Gierasch LM (2009) Sending signals dynamically. Science 324: 198-203.
-
(2009)
Science
, vol.324
, pp. 198-203
-
-
Smock, R.G.1
Gierasch, L.M.2
-
68
-
-
0037470496
-
Antibody multispecificity mediated by conformational diversity
-
James LC, Roversi P, Tawfik DS (2003) Antibody multispecificity mediated by conformational diversity. Science 299: 1362-1367.
-
(2003)
Science
, vol.299
, pp. 1362-1367
-
-
James, L.C.1
Roversi, P.2
Tawfik, D.S.3
-
69
-
-
0025100372
-
Three-dimensional structure of the ATPase fragment of a 70K heat-shock cognate protein
-
Flaherty KM, Luca-Flaherty C, McKay DB (1990) Three-dimensional structure of the ATPase fragment of a 70K heat-shock cognate protein. Nature 346: 623-628.
-
(1990)
Nature
, vol.346
, pp. 623-628
-
-
Flaherty, K.M.1
Luca-Flaherty, C.2
McKay, D.B.3
-
70
-
-
35649024724
-
Structural basis of J cochaperone binding and regulation of Hsp70
-
Jiang J, Maes EG, Taylor AB, Wang L, Hinck AP, et al. (2007) Structural basis of J cochaperone binding and regulation of Hsp70. Mol Cell 28: 422-433.
-
(2007)
Mol Cell
, vol.28
, pp. 422-433
-
-
Jiang, J.1
Maes, E.G.2
Taylor, A.B.3
Wang, L.4
Hinck, A.P.5
-
71
-
-
49449105092
-
The structure of CCT-Hsc70 NBD suggests a mechanism for Hsp70 delivery of substrates to the chaperonin
-
Cuellar J, Martin-Benito J, Scheres SH, Sousa R, Moro F, et al. (2008) The structure of CCT-Hsc70 NBD suggests a mechanism for Hsp70 delivery of substrates to the chaperonin. Nat Struct Mol Biol 15: 858-864.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 858-864
-
-
Cuellar, J.1
Martin-Benito, J.2
Scheres, S.H.3
Sousa, R.4
Moro, F.5
-
72
-
-
33846020582
-
Allosteric regulation of Hsp70 chaperones involves a conserved interdomain linker
-
Vogel M, Mayer MP, Bukau B (2006) Allosteric regulation of Hsp70 chaperones involves a conserved interdomain linker. J Biol Chem 281: 38705-38711.
-
(2006)
J Biol Chem
, vol.281
, pp. 38705-38711
-
-
Vogel, M.1
Mayer, M.P.2
Bukau, B.3
-
73
-
-
34047268015
-
Hsp70 chaperone ligands control domain association via an allosteric mechanism mediated by the interdomain linker
-
Swain JF, Dinler G, Sivendran R, Montgomery DL, Stotz M, et al. (2007) Hsp70 chaperone ligands control domain association via an allosteric mechanism mediated by the interdomain linker. Mol Cell 26: 27-39.
-
(2007)
Mol Cell
, vol.26
, pp. 27-39
-
-
Swain, J.F.1
Dinler, G.2
Sivendran, R.3
Montgomery, D.L.4
Stotz, M.5
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