A novel six-rhodopsin system in a single archaeon

Journal of Bacteriology

Volumn 192, Issue 22, 2010, Pages 5866-5873

  Fu, Hsu Yuan ^a   Lin, Yu Cheng ^a   Chang, Yung Ning ^a   Tseng, Hsiaochu ^b   Huang, Ching Che ^a   Liu, Kang Cheng ^a   Huang, Ching Shin ^a   Su, Che Wei ^a   Weng, Rueyhung Roc ^b   Lee, Yin Yu ^c   Ng, Wailap Victor ^b   Yang, Chii Shen ^a  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^b TAIPEI CITY HOSPITAL   (Taiwan)

^c NATIONAL SYNCHROTRON RADIATION RESEARCH CENTER   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; OPSIN; RHODOPSIN;

ARCHAEBACTERIUM; ARTICLE; ESCHERICHIA COLI; GENE OVEREXPRESSION; HALOARCULA MARISMORTUI; ION TRANSPORT; LIGHT; MOLECULAR CLONING; NONHUMAN; PHOTOLYSIS; PHOTOTAXIS; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN PURIFICATION; PROTON TRANSPORT; SEQUENCE ANALYSIS; SPECTRAL SENSITIVITY;

ARCHAEAL PROTEINS; BIOLOGICAL TRANSPORT; CLONING, MOLECULAR; ESCHERICHIA COLI; GENE EXPRESSION; GENE EXPRESSION PROFILING; HALOARCULA MARISMORTUI; LIGHT; MOVEMENT; RECOMBINANT PROTEINS; RHODOPSIN; SPECTRUM ANALYSIS;

ARCHAEA; ESCHERICHIA COLI; EUKARYOTA; HALOARCULA MARISMORTUI;

EID: 78049432113     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00642-10     Document Type: Article

References (37)

1. Alexander, R. P., and I. B. Zhulin. 2007. Evolutionary genomics reveals conserved structural determinants of signaling and adaptation in microbial chemoreceptors. Proc. Natl. Acad. Sci. U. S. A. 104:2885-2890.
2. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
3. Baliga, N. S., R. Bonneau, M. T. Facciotti, M. Pan, G. Glusman, E. W. Deutsch, P. Shannon, Y. Chiu, R. S. Weng, R. R. Gan, P. Hung, S. V. Date, E. Marcotte, L. Hood, and W. V. Ng. 2004. Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Res. 14:2221-2234.
4. Bogomolni, R. A., and J. L. Spudich. 1982. Identification of a third rhodopsin- like pigment in phototactic Halobacterium halobium. Proc. Natl. Acad. Sci. U. S. A. 79:6250-6254.
5. Bolhuis, H., P. Palm, A. Wende, M. Falb, M. Rampp, F. Rodriguez-Valera, F. Pfeiffer, and D. Oesterhelt. 2006. The genome of the square archaeon Haloquadratum walsbyi: life at the limits of water activity. BMC Genomics 7:169.
6. Chen, X., and J. L. Spudich. 2004. Five residues in the HtrI transducer membrane-proximal domain close the cytoplasmic proton-conducting channel of sensory rhodopsin I. J. Biol. Chem. 279:42964-42969.
7. Chizhov, I., and M. Engelhard. 2001. Temperature and halide dependence of the photocycle of halorhodopsin from Natronobacterium pharaonis. Biophys. J. 81:1600-1612.
8. Chizhov, I., G. Schmies, R. Seidel, J. R. Sydor, B. Luttenberg, and M. Engelhard. 1998. The photophobic receptor from Natronobacterium pharaonis: temperature and pH dependencies of the photocycle of sensory rhodopsin II. Biophys. J. 75:999-1009.
9. Fain, G. L., R. Hardie, and S. B. Laughlin. 2010. Phototransduction and the evolution of photoreceptors. Curr. Biol. 20:R114-R124.
10. Falb, M., K. Muller, L. Konigsmaier, T. Oberwinkler, P. Horn, S. von Gronau, O. Gonzalez, F. Pfeiffer, E. Bornberg-Bauer, and D. Oesterhelt. 2008. Metabolism of halophilic archaea. Extremophiles 12:177-196.
11. Galperin, M. Y., A. N. Nikolskaya, and E. V. Koonin. 2001. Novel domains of the prokaryotic two-component signal transduction systems. FEMS Microbiol. Lett. 203:11-21.
12. Gish, W., and D. J. States. 1993. Identification of protein coding regions by database similarity search. Nat. Genet. 3:266-272.
13. Hildebrand, E., and N. Dencher. 1975. Two photosystems controlling behavioural responses of Halobacterium halobium. Nature 257:46-48.
14. Hohenfeld, I. P., A. A. Wegener, and M. Engelhard. 1999. Purification of histidine tagged bacteriorhodopsin, pharaonis halorhodopsin and pharaonis sensory rhodopsin II functionally expressed in Escherichia coli. FEBS Lett. 442:198-202.
15. Hou, S., A. Brooun, H. S. Yu, T. Freitas, and M. Alam. 1998. Sensory rhodopsin II transducer HtrII is also responsible for serine chemotaxis in the archaeon Halobacterium salinarum. J. Bacteriol. 180:1600-1602.
16. Letunic, I., T. Doerks, and P. Bork. 2009. SMART 6: recent updates and new developments. Nucleic Acids Res. 37:D229-D232.
17. Lin, Y. C., H. Y. Fu, and C. S. Yang. 2010. Phototaxis of Haloarcula marismortui revealed through a novel microbial motion analysis algorithm. Photochem. Photobiol. 86:1084-1090.
18. Madden, T. L., R. L. Tatusov, and J. Zhang. 1996. Applications of network BLAST server. Methods Enzymol. 266:131-141.
19. Matsuno-Yagi, A., and Y. Mukohata. 1980. ATP synthesis linked to light-dependent proton uptake in a rad mutant strain of Halobacterium lacking bacteriorhodopsin. Arch. Biochem. Biophys. 199:297-303.
20. Mukohata, Y., K. Ihara, T. Tamura, and Y. Sugiyama. 1999. Halobacterial rhodopsins. J. Biochem. 125:649.
21. Oesterhelt, D., and W. Stoeckenius. 1971. Rhodopsin-like protein from the purple membrane of Halobacterium halobium. Nat. New Biol. 233:149-152.
22. Parkinson, J. S. 2003. Bacterial chemotaxis: a new player in response regulator dephosphorylation. J. Bacteriol. 185:1492-1494.
23. Robb, F. T. 1995. Archaea: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
24. Sasaki, J., L. S. Brown, Y. S. Chon, H. Kandori, A. Maeda, R. Needleman, and J. K. Lanyi. 1995. Conversion of bacteriorhodopsin into a chloride ion pump. Science 269:73-75.
25. Sasaki, J., and J. L. Spudich. 2008. Signal transfer in haloarchaeal sensory rhodopsin-transducer complexes. Photochem. Photobiol. 84:863-868.
26. Scharf, B., and M. Engelhard. 1994. Blue halorhodopsin from Natronobacterium pharaonis: wavelength regulation by anions. Biochemistry 33:6387-6393.
27. Schmies, G., I. Chizhov, and M. Engelhard. 2000. Functional expression of His-tagged sensory rhodopsin I in Escherichia coli. FEBS Lett. 466:67-69.
28. Schobert, B., and J. K. Lanyi. 1982. Halorhodopsin is a light-driven chloride pump. J. Biol. Chem. 257:10306-10313.
29. Schultz, J., F. Milpetz, P. Bork, and C. P. Ponting. 1998. SMART, a simple modular architecture research tool: identification of signaling domains. Proc. Natl. Acad. Sci. U. S. A. 95:5857-5864.
30. Sineshchekov, O. A., E. G. Govorunova, and J. L. Spudich. 2009. Photosensory functions of channel rhodopsins in native algal cells. Photochem. Photobiol. 85:556-563.
31. Sineshchekov, O. A., K. H. Jung, and J. L. Spudich. 2002. Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. U. S. A. 99:8689-8694.
32. Spudich, J. L. 2006. The multitalented microbial sensory rhodopsins. Trends Microbiol. 14:480-487.
33. Spudich, J. L., and R. A. Bogomolni. 1984. Mechanism of colour discrimination by a bacterial sensory rhodopsin. Nature 312:509-513.
34. Spudich, J. L., C. S. Yang, K. H. Jung, and E. N. Spudich. 2000. Retinylidene proteins: structures and functions from archaea to humans. Annu. Rev. Cell Dev. Biol. 16:365-392.
35. Takahashi, T., Y. Mochizuki, N. Kamo, and Y. Kobatake. 1985. Evidence that the long-lifetime photointermediate of s-rhodopsin is a receptor for negative phototaxis in Halobacterium halobium. Biochem. Biophys. Res. Commun. 127:99-105.
36. Wang, W. W., O. A. Sineshchekov, E. N. Spudich, and J. L. Spudich. 2003. Spectroscopic and photochemical characterization of a deep ocean proteorhodopsin. J. Biol. Chem. 278:33985-33991.
37. Zhang, W., A. Brooun, M. M. Mueller, and M. Alam. 1996. The primary structures of the Archaeon Halobacterium salinarum blue light receptor sensory rhodopsin II and its transducer, a methyl-accepting protein. Proc. Natl. Acad. Sci. U. S. A. 93:8230-8235.