Identification of Kunitz trypsin inhibitor mutations using SNAP markers in soybean mutant lines

Theoretical and Applied Genetics

Volumn 121, Issue 4, 2010, Pages 751-760

  Kim, D S ^a   Lee, K J ^a   Kim, J B ^a   Kim, S H ^a   Song, J Y ^a   Seo, Y W ^b   Lee, B M ^c   Kang, S Y ^a  

^a Korea Atomic Energy Research Institute   (South Korea)

^b Korea University   (South Korea)

^c Dongguk University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVITY-BASED; KUNITZ TRYPSIN INHIBITORS; LANDRACES; MUTANT LINES; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMORPHIC TYPES; SINGLE NUCLEOTIDE-AMPLIFIED POLYMORPHISMS; TRYPSIN INHIBITOR ACTIVITY;

AMINO ACIDS;

ELECTROPHORESIS;

GLYCINE MAX;

PLANT DNA; SOYBEAN TRYPSIN INHIBITOR;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; GENETIC MARKER; GENETICS; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM; SOYBEAN;

AMINO ACID SEQUENCE; BASE SEQUENCE; DNA, PLANT; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENETIC MARKERS; MOLECULAR SEQUENCE DATA; MUTATION; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ALIGNMENT; SOYBEANS; TRYPSIN INHIBITOR, KUNITZ SOYBEAN;

EID: 78049408942     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1346-1     Document Type: Article

References (41)

1. Birk Y (1961) Purification and some properties of a high active inhibitor of trypsin and α-chymotrypsin from soybean. Biochem Biophys Acta 54: 378-381.
2. Birk Y, Gertler A, Khalef S (1963) A pure trypsin inhibitor from soya beans. J Biochem 87: 281-282.
3. Chang HH, Lee YK, Kim JS, Kee KS, Cho KS (2003) Mutation spectrum of manganese (II) peroxidase gene in the Pleurotus ostreatus mutants induced by gamma radiation. J Microbiol 41: 52-57.
4. Donald L, Vadim B, Marina KA, Monica AS, Elio MH, Niels CN (2007) Reduction of protease inhibitor activity by expression of a mutant Bowman-Birk gene in soybean seed. Plant Mol Biol 64: 397-408.
5. Drenkard E, Richter BG, Rozoen S, Stutius LM, Angell NA, Mandrinos M, Cho RJ, Oegner PJ, Davis RW, Ausubel FM (2000) A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis. Plant Physiol 124: 1483-1492.
6. Frattali V, Steiner RF (1968) Soybean inhibitor. 1. Separation and some properties of three inhibitors from commercial crude soybean trypsin. Biochemistry 7: 521-531.
7. Hayasi K, Hashimoto N, Daigen M, Ashikawa I (2004) Development of PCR-based SNP markers for rice blast resistance genes at the piz locus. Theor Appl Genet 108: 1212-1220.
8. Hymowitz T (1973) Electrophoretic analysis of SBTI-A2 in the USFA soybean germplasm collection. Crop Sci 13: 420-421.
9. Hymowitz T, Kaizuma N (1981) Soybean seed protein electrophoresis profiles from 15 Asian countries or regions; hypotheses on paths of dissemination of soybean from China. Econ Bot 35: 10-23.
10. Kaizuma N, Oikawa K, Miura M (1980) Consideration on the cause of the differential Ti alleles frequency distributions found among some regional populations of soybean (Glycine max (L.) Merrill) land varieties. J Fac Agric Iwate Univ 15: 81-96.
11. Kim SH, Hara S, Hase S, Ikenaka T, Tode H, Kitamura K, Kaizuma N (1985) Comparative study on amino acid sequence of Kunitz-type soybean trypsin inhibitors, Tia, Tib, and Tic. J Biochem 19: 435-448.
12. Kim MY, van K, Lestari P (2005) SNP identification and SNAP marker development for a Gm NARK gene controlling supernodulation in soybean. Theor Appl Genet 110: 1003-1010.
13. Konieczny A, Ausubel F (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J 4: 403-410.
14. Krishnan HB (2001) Characterization of a soybean [Glycine max (L.) Merr.] mutant with reduced levels of Kunitz trypsin inhibitor. Plant Sci 160: 979-986.
15. Lajolo FM, Genovese MI (2002) Nutritional significance of lectins and enzyme inhibitors from legumes. J Agric Food Chem 50: 6592-6598.
16. Laskowski M Jr, Kato O (1980) Protein inhibitors of proteinases. Annu Rev Biochem 49: 593-626.
17. Li FS (1993) Studies on the ecological and geographical distribution of the Chinese resources of wild soybean (G. Soja). Sci Agric Sin 26: 47-55.
18. Liener IE (1994) Implications of antinutritional components in soybean foods. Crit Rev Food Sci Nutr 34: 31-67.
19. Makoto S, Daisuke I, Kosuke Y, Mitsuru A, Suguru O, Yoshie SM (2007) Kunitz soybean trypsin inhibitor is modified at its C-terminus by novel soybean thiol protease (Protease T1). Plant Prod Sci 10: 314-321.
20. Manjaya JG, Suseelan KN, Gopalakrishna T, Pawar SE, Bapat VA (2007) Radiation induced variability of seed storage proteins in soybean [Glycine max (L.) Merrill]. Food Chem 100: 1324-1327.
21. Mohamed AI, Rangappa M (1992) Screening soybean (grain and vegetable) genotypes for nutrients and anti-nutritional factors. Plant Food Hum Nutr 42: 87-96.
22. Motokazu K, Tadahiko K (2003) Rapid DNA extraction method from soybean seeds. Breed Sci 53: 277-279.
23. Neff MM, Neff JD, Chory J, Pepper AE (1998) dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J 14: 387-392.
24. Orf JH, Hymowitz T (1979) Inheritance of the absence of the Kunitz trypsin inhibitor in seed protein of soybeans. Crop Sci 19: 107-109.
25. Petruska J, Goodman MF, Boosalis MS, Sowers LC, Cheong C, Tinoco I (1988) Comparison between DNA melting thermodynamics and DNA polymerase fidelity. Proc Nat Acad Sci USA 85: 6252-6256.
26. Rachis JJ, Anderson RL (1964) Isolation of four soybean trypsin inhibitors by DEAE-cellulose chromatography. Biochem Biophys Res Commun 15: 230-235.
27. Selvi BS, Ponnuswami V, Sumathi T (2007) Identification of DNA polymorphism induced by gamma ray irradiation in Amla (Emblica Officinalis Gaertn.) grafts of V1M1 and V2M1 generation. J Appl Sci Res 3: 1933-1935.
28. Singh LC, Wilson M, Hadley HH (1969) Genetic differences in soybean trypsin inhibitor separated by disc electrophoresis. Crop Sci 9: 489-491.
29. Song SI, Kim CH, Baek SJ, Choi YD (1993) Nucleotide sequences of cDNA encoding the precursors for soybean (Glycine max) trypsin inhibitors (Kunitz type). Plant Physiol 101: 1401-1402.
30. Toledo TCF, Canniatti-Brazaca SG, Arthur V, Piedade SMS (2007) Effects of gamma radiation on total phenolics, trypsin and tannins inhibitors in soybean grains. Radiat Phys chem 76: 1653-1656.
31. Ugozzoli L, Wallace RB (1991) Allele-specific polymerase chain reaction. Methods Enzymol 2: 42-48.
32. Wang KJ, Li XH (2005) Tif type of soybean Kunitz trypsin inhibitor exists in wild soybean of northern China. In: Pro ceedings of the 8th national soybean research conference of China, pp 167-168.
33. Wang KJ, Kaizuma N, Takahata Y, Hatakeyama S (1996) Detection of two new variants of soybean Kunitz trypsin inhibitor through electrophoresis. Breed Sci 46: 39-44.
34. Wang KJ, Takahata Y, Ito K, Zhao YP, Tsutsumi KI, Kaizuma N (2001) Genetic characterization of a novel soybean Kunitz trypsin inhibitor. Breed Sci 51: 185-190.
35. Wang KJ, Yamashita T, Watanabe M, Takahata Y (2004) Genetic characterization of a novel Tib-derived variant of soybean Kunitz trypsin inhibitor detected in wild soybean (Glycine soja). Genome 47: 9-14.
36. Wang KJ, Takahata Y, Kono Y, Kaizuma N (2008) Allelic differentiation of Kunitz trypsin inhibitor in wild soybean (Glycine soja). Theor Appl Genet 117: 565-573.
37. Wijker CA, Lafleur MVM, Steeg H, Mohn GR, Retèl J (1996) γ-Radiation-induced mutation spectrum in the episomal lacI gene of Escherichia coli under oxic conditions. Mutat Res 349: 229-239.
38. Xin H, Xie KF, Dong AW, Uan QY, Gu QM (1999) The amino acid sequence determination of a new variant of Kunitz soybean trypsin inhibitor (SBTi-A2). Soybean Genet Newslett (online Journal). http://www. soybgenetics. org/aricles/sgn1999004. html (accessed 24 Mar 1999).
39. Yamamoto M, Ikenaka T (1967) Studies on soybean trypsin inhibitor. Purification and characterization of two soybean trypsin inhibitors. J Biochem 62: 141-149.
40. Zhao SW, Wang H (1992) A new electrophoretic variant of SBTi-A2 in soybean seed protein. Soyb Genet Newsl 19: 22-24.
41. Zhu YL, Song QJ, Hyten SM, Fickus EW, Young ND, Cregan PB (2003) Single-nucleotide polymorphism in soybean. Genetics 163: 1123-1134.