Specificity of staphyloferrin B recognition by the SirA receptor from Staphylococcus aureus

Journal of Biological Chemistry

Volumn 285, Issue 45, 2010, Pages 34579-34588

  Grigg, Jason C ^a   Cheung, Johnson ^b   Heinrichs, David E ^b   Murphy, Michael E P ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b UNIVERSITY OF WESTERN ONTARIO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PATHOGENS; BINDING POCKETS; BINDING PROTEINS; C-TERMINAL DOMAINS; COMMON STRATEGY; CONFORMATIONAL CHANGE; HIGH AFFINITY; HIGH RESOLUTION; HYDROXYCARBOXYLATE; IRON CHELATORS; IRON COMPLEX; IRON CONCENTRATIONS; IRON-LIMITATION; LOW MOLECULAR WEIGHT; MAMMALIAN HOSTS; N-AND C-TERMINAL DOMAINS; NANOMOLAR DISSOCIATION; NITROGEN ATOM; OCTAHEDRAL GEOMETRY; OXYGEN ATOM; SIDEROPHORES; SOPHISTICATED SYSTEM; STAPHYLOCOCCUS AUREUS; STRUCTURAL FEATURE;

BINDING ENERGY; CRYSTAL STRUCTURE; DISSOCIATION; MAMMALS; OXYGEN; PATHOGENS; PLANTS (BOTANY);

IRON COMPOUNDS;

BACTERIAL PROTEIN; BINDING PROTEIN; IRON; PROTEIN SIRA; STAPHYLOFERRIN A; STAPHYLOFERRIN B; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; CRYSTAL STRUCTURE; DISSOCIATION CONSTANT; MOLECULAR RECOGNITION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; STAPHYLOCOCCUS AUREUS;

BACTERIAL PROTEINS; BINDING SITES; CITRATES; CRYSTALLOGRAPHY, X-RAY; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; STAPHYLOCOCCUS AUREUS; STRUCTURE-ACTIVITY RELATIONSHIP;

BACTERIA (MICROORGANISMS); MAMMALIA; SEIRA; STAPHYLOCOCCUS AUREUS;

EID: 78049400552     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.172924     Document Type: Article

References (72)

1. Kluytmans, J. A., and Wertheim, H. F. (2005) Infection 33, 3-8
2. Lowy, F. D. (1998) N. Engl. J. Med. 339, 520-532
3. Klevens, R. M., Morrison, M. A., Nadle, J., Petit, S., Gershman, K., Ray, S., Harrison, L. H., Lynfield, R., Dumyati, G., Townes, J. M., Craig, A. S., Zell, E. R., Fosheim, G. E., McDougal, L. K., Carey, R. B., and Fridkin, S. K. (2007) JAMA 298, 1763-1771
4. Weems, J. J., Jr. (2001) Postgrad. Med. 110, 24-36
5. Wandersman, C., and Delepelaire, P. (2004) Annu. Rev. Microbiol. 58, 611-647
6. Stojiljkovic, I., and Perkins-Balding, D. (2002) DNA Cell Biol. 21, 281-295
7. Grigg, J. C., Ukpabi, G., Gaudin, C. F., and Murphy, M. E. (2010) J. Inorg. Biochem. 104, 341-348
8. Maresso, A. W., and Schneewind, O. (2006) Biometals 19, 193-203
9. Beasley, F. C., and Heinrichs, D. E. (2010) J. Inorg. Biochem. 104, 282-288
10. Mazmanian, S. K., Skaar, E. P., Gaspar, A. H., Humayun, M., Gornicki, P., Jelenska, J., Joachmiak, A., Missiakas, D. M., and Schneewind, O. (2003) Science 299, 906-909
11. Skaar, E. P., and Schneewind, O. (2004) Microbes Infect. 6, 390-397
12. Winkelmann, G. (2002) Biochem. Soc. Trans. 30, 691-696
13. Drechsel, H., Freund, S., Nicholson, G., Haag, H., Jung, O., Zähner, H., and Jung, G. (1993) Biometals 6, 185-192
14. Haag, H., Fiedler, H. P., Meiwes, J., Drechsel, H., Jung, G., and Zähner, H. (1994) FEMS Microbiol. Lett. 115, 125-130
15. Konetschny-Rapp, S., Jung, G., Meiwes, J., and Zähner, H. (1990) Eur. J. Biochem. 191, 65-74
16. Meiwes, J., Fiedler, H. P., Haag, H., Zähner, H., Konetschny-Rapp, S., and Jung, G. (1990) FEMS Microbiol. Lett. 55, 201-205
17. Sebulsky, M. T., and Heinrichs, D. E. (2001) J. Bacteriol. 183, 4994-5000
18. Sebulsky, M. T., Hohnstein, D., Hunter, M. D., and Heinrichs, D. E. (2000) J. Bacteriol. 182, 4394-4400
19. Cabrera, G., Xiong, A., Uebel, M., Singh, V. K., and Jayaswal, R. K. (2001) Appl. Environ. Microbiol. 67, 1001-1003
20. Beasley, F. C., Vinés, E. D., Grigg, J. C., Zheng, Q., Liu, S., Lajoie, G. A., Murphy, M. E., and Heinrichs, D. E. (2009) Mol. Microbiol. 72, 947-963
21. Cheung, J., Beasley, F. C., Liu, S., Lajoie, G. A., and Heinrichs, D. E. (2009) Mol. Microbiol. 74, 594-608
22. Cotton, J. L., Tao, J., and Balibar, C. J. (2009) Biochemistry 48, 1025-1035
23. Dale, S. E., Doherty-Kirby, A., Lajoie, G., and Heinrichs, D. E. (2004) Infect. Immun. 72, 29-37
24. Bhatt, G., and Denny, T. P. (2004) J. Bacteriol. 186, 7896-7904
25. Dale, S. E., Sebulsky, M. T., and Heinrichs, D. E. (2004) J. Bacteriol. 186, 8356-8362
26. Speziali, C. D., Dale, S. E., Henderson, J. A., Vinés, E. D., and Heinrichs, D. E. (2006) J. Bacteriol. 188, 2048-2055
27. Grigg, J. C., Cooper, J. D., Cheung, J., Heinrichs, D. E., and Murphy, M. E. (2010) J. Biol. Chem. 285, 11162-11171
28. Sebulsky, M. T., Shilton, B. H., Speziali, C. D., and Heinrichs, D. E. (2003) J. Biol. Chem. 278, 49890-49900
29. Sebulsky, M. T., Speziali, C. D., Shilton, B. H., Edgell, D. R., and Heinrichs, D. E. (2004) J. Biol. Chem. 279, 53152-53159
30. Ward, J. J., McGuffin, L. J., Bryson, K., Buxton, B. F., and Jones, D. T. (2004) Bioinformatics 20, 2138-2139
31. Ward, J. J., Sodhi, J. S., McGuffin, L. J., Buxton, B. F., and Jones, D. T. (2004) J. Mol. Biol. 337, 635-645
32. Van Duyne, G. D., Standaert, R. F., Karplus, P. A., Schreiber, S. L., and Clardy, J. (1993) J. Mol. Biol. 229, 105-124
33. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
34. Terwilliger, T. C., and Berendzen, J. (1999) Acta Crystallogr. D Biol. Crystallogr. 55, 849-861
35. Terwilliger, T. C. (2000) Acta Crystallogr. D Biol. Crystallogr. 56, 965-972
36. Terwilliger, T. C. (2003) Acta Crystallogr. D Biol. Crystallogr. 59, 38-44
37. Perrakis, A., Morris, R., and Lamzin, V. S. (1999) Nat. Struct. Biol. 6, 458-463
38. Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Acta Crystallogr. D Biol. Crystallogr. 66, 486-501
39. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. D Biol. Crystallogr. 53, 240-255
40. Painter, J., and Merritt, E. A. (2006) J. Appl. Crystallogr. 39, 109-111
41. Painter, J., and Merritt, E. A. (2006) Acta Crystallogr. D Biol. Crystallogr. 62, 439-450
42. Vagin, A., and Teplyakov, A. (1997) J. Appl. Crystallogr. 30, 1022-1025
43. CCP4 (1994) Acta Crystallogr. D Biol. Crystallogr. 50, 760-763
44. DeLano, W. L. (2008) The PyMOL Molecular Graphics System, DeLano Scientific LLC, Palo Alto, CA
45. Shindyalov, I. N., and Bourne, P. E. (1998) Protein Eng. 11, 739-747
46. Gille, C., and Frömmel, C. (2001) Bioinformatics 17, 377-378
47. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) Nucleic Acids Res. 25, 4876-4882
48. Waterhouse, A. M., Procter, J. B., Martin, D. M., Clamp, M., and Barton, G. J. (2009) Bioinformatics 25, 1189-1191
49. Grigg, J. C., Vermeiren, C. L., Heinrichs, D. E., and Murphy, M. E. (2007) J. Biol. Chem. 282, 28815-28822
50. Krewulak, K. D., Shepherd, C. M., and Vogel, H. J. (2005) Biometals 18, 375-386
51. Peuckert, F., Miethke, M., Albrecht, A. G., Essen, L. O., and Marahiel, M. A. (2009) Angew. Chem. Int. Ed. Engl. 48, 7924-7927
52. Shi, R., Proteau, A., Wagner, J., Cui, Q., Purisima, E. O., Matte, A., and Cygler, M. (2009) Proteins 75, 598-609
53. Holm, L., Kääriäinen, S., Rosenström, P., and Schenkel, A. (2008) Bioinformatics 24, 2780-2781
54. Hider, R. C., and Kong, X. (2010) Nat. Prod. Rep. 27, 637-657
55. Cobessi, D., Celia, H., and Pattus, F. (2005) J. Mol. Biol. 352, 893-904
56. Tseng, C. F., Burger, A., Mislin, G. L., Schalk, I. J., Yu, S. S., Chan, S. I., and Abdallah, M. A. (2006) J. Biol. Inorg. Chem. 11, 419-432
57. Gobin, J., Moore, C. H., Reeve, J. R., Jr., Wong, D. K., Gibson, B. W., and Horwitz, M. A. (1995) Proc. Natl. Acad. Sci. 92, 5189-5193
58. Hough, E., and Rogers, D. (1974) Biochem. Biophys. Res. Commun. 57, 73-77
59. Einsle, O., Messerschmidt, A., Stach, P., Bourenkov, G. P., Bartunik, H. D., Huber, R., and Kroneck, P. M. (1999) Nature 400, 476-480
60. Rohrbach, M. R., Braun, V., and Köster, W. (1995) J. Bacteriol. 177, 7186-7193
61. Carter, D. M., Miousse, I. R., Gagnon, J. N., Martinez, E., Clements, A., Lee, J., Hancock, M. A., Gagnon, H., Pawelek, P. D., and Coulton, J. W. (2006) J. Biol. Chem. 281, 35413-35424
62. Hoegy, F., Celia, H., Mislin, G. L., Vincent, M., Gallay, J., and Schalk, I. J. (2005) J. Biol. Chem. 280, 20222-20230
63. Clarke, T. E., Braun, V., Winkelmann, G., Tari, L. W., and Vogel, H. J. (2002) J. Biol. Chem. 277, 13966-13972
64. Clarke, T. E., Ku, S. Y., Dougan, D. R., Vogel, H. J., and Tari, L. W. (2000) Nat. Struct. Biol. 7, 287-291
65. Borths, E. L., Locher, K. P., Lee, A. T., and Rees, D. C. (2002) Proc. Natl. Acad. Sci. 99, 16642-16647
66. Ho, W. W., Li, H., Eakanunkul, S., Tong, Y., Wilks, A., Guo, M., and Poulos, T. L. (2007) J. Biol. Chem. 282, 35796-35802
67. Karpowich, N. K., Huang, H. H., Smith, P. C., and Hunt, J. F. (2003) J. Biol. Chem. 278, 8429-8434
68. Liu, M., Su, J. G., Kong, R., Sun, T. G., Tan, J. J., Chen, W. Z., and Wang, C. X. (2008) Biophys. Chem. 138, 42-49
69. Liu, M., Sun, T., Hu, J., Chen, W., and Wang, C. (2008) Biophys. Chem. 135, 19-24
70. Kandt, C., Xu, Z., and Tieleman, D. P. (2006) Biochemistry 45, 13284-13292
71. Hvorup, R. N., Goetz, B. A., Niederer, M., Hollenstein, K., Perozo, E., and Locher, K. P. (2007) Science 317, 1387-1390
72. Braun, V., and Herrmann, C. (2007) J. Bacteriol. 189, 6913-6918