Selection systems based on dominant-negative transcription factors for precise genetic engineering

Nucleic Acids Research

Volumn 38, Issue 19, 2010, Pages

  Dutoit, Raphaël ^a   Dubois, Evelyne ^a,b   Jacobs, Eric ^a  

^a Institut de Recherches Microbiologiques JM Wiame   (Belgium)

^b UNIVERSITÉ LIBRE DE BRUXELLES   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; ENDONUCLEASE; GALACTOSE; OROTIDINE 5' PHOSPHATE DECARBOXYLASE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR ARG81; TRANSCRIPTION FACTOR GAL4; UNCLASSIFIED DRUG;

ACCURACY; AMINO ACID METABOLISM; ARTICLE; CONTROLLED STUDY; DNA MODIFICATION; GENE DELETION; GENETIC ENGINEERING; GENETIC SELECTION; GROWTH INHIBITION; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; WILD TYPE;

SACCHAROMYCES CEREVISIAE;

EID: 78049387499     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq708     Document Type: Article

References (41)

1. Winzeler, E.A., Shoemaker, D.D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J.D., Bussey, H. et al. (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science, 285, 901-906.
2. Giaver, G., Chu, A.M., Ni, L., Connelly, C., Riles, L., Véronneau, S., Dow, S., Lucau-Danila, A., Anderson, K., André, B. et al. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature, 418, 387-391.
3. Scherens, B. and Goffeau, A. (2004) The uses of genome-wide yeast mutant collections. Genome Biol., 5, 229.
4. Johnston, M., Riles, L. and Hegemann, J.H. (2000) Gene disruption. Methods Enzymol., 350, 290-315.
5. Wach, A., Brachat, A., Pöhlmann, R. and Philippsen, P. (1994) New heterologous modules for classical or PCR-based gene disruption in Saccharomyces cerevisiae. Yeast, 10, 1793-1808.
6. Längle-Rouault, F. and Jacobs, E. (1995) A method for performing precise alterations in the yeast genome using a recyclable selectable marker. Nucleic Acids Res., 23, 3079-3081.
7. Sauer, B. (1987) Functional Expression of the cre-lox Site-Specific Recombination System in the Yeast Saccharomyces cerevisiae. Mol. Cell. Biol., 7, 2087-2096.
8. Güldener, U., Heck, S., Fielder, T., Beinhauer, J. and Hegemann, J.H. (1996) A new efficient gene disruption cassette for repeated use in budding yeast. Nucleic Acids Res., 24, 2519-2524.
9. Akada, R., Matsuo, K., Aritomi, K. and Nishizawa, Y. (1999) construction of recombinant sake yeast containing a dominant FAS2 mutation without extraneous sequences by a two-step gene replacement protocol. J. Biosci. Bioeng., 87, 43-48.
10. Olesen, K., Johannesen, P., Hoffmann, L., Sorensen, S., Gjerlansen, C. and Hansen, J. (2000) The pYC plasmids, a series of cassette-based yeast plasmid vectors providing means of counter-selection. Yeast, 16, 1035-1043.
11. Hirosawa, I., Aritomi, K., Hoshida, H., Kashiwagi, S., Nishizawa, Y. and Akada, R. (2004) Construction of a self-cloning sake yeast that overexpresses alcohol acetyltransferase gene by a two-step gene replacement protocol. Appl. Microbiol. Biotechnol., 65, 68-73.
12. Urnov, F., Rebar, E., Reik, A. and Pandolfi, P. (2002) Designed transcription factors as structural, functional and therapeutic probes of chromatin in vivo. EMBO Rep., 3, 610-615.
13. Caponigro, G., Abedi, M.R., Hurlburt, A.P., Maxfield, A., Judd, W. and Kamb, A. (1998) Transdominant genetic analysis of a growth control pathway. Proc. Natl Acad. Sci. USA, 95, 750-7513.
14. Vélot, C. and Srere, P. (2000) Reversible transdominant inhibition of a metabolic pathway. J. Biol. Chem., 275, 12926-12933.
15. Boyer, J., Badis, G., Fairhead, C., Talla, E., Hantraye, F., Fabre, E., Fischer, G., Hennequin, C., Koszul, R., Lafontaine, I. et al. (2004) Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae. Genome Biol., 5, R72.
16. Ortiz, P. and Kinzy, T. (2005) Dominant-negative mutant phenotypes and the regulation of translation elongation factor 2 levels in yeast. Nucleic Acids Res., 33, 5740-5748.
17. Koedrith, P., Dubois, E., Scherens, B., Jacobs, E., Boonchird, C. and Messenguy, F. (2008) Identification and characterization of a thermotolerant yeast strain isolated from banana leaves. Sci. Asia, 34, 147-152.
18. Nogi, Y. and Fukasawa, T. (1989) Functional domains of a negative regulatory protein, GAL80, of Saccharomyces cerevisiae. Mol. Cell. Biol., 9, 3009-3017.
19. Johnston, M. (1987) A model fungal gene regulatory mechanism: the GAL genes of Saccharomyces cerevisiae. Microbiol. Rev., 51, 458-476.
20. Silver, P., Keegan, L. and Ptashne, M. (1984) Amino terminus of the yeast GAL4 gene product is sufficient for nuclear localization. Proc. Natl Acad. Sci. USA, 81, 5951-5955.
21. Gill, G. and Ptashne, M. (1988) Negative effect of transcriptional activator GAL4. Nature, 334, 721-724.
22. Carey, M., Kakidani, H., Leatherwood, J., Mostashari, F. and Ptashne, M. (1989) An amino-terminal fragment of GAL4 binds DNA as a dimer. J. Mol. Biol., 209, 423-432.
23. Chasman, D. and Kornberg, R. (1990) GAL4 protein: purification, association with GAL80 protein, and conserved domain structure. Mol. Cell. Biol., 10, 2916-2923.
24. Platt, T. (1984) Toxicity of 2-deoxygalactose to Saccharomyces cerevisiae cells constitutively synthesizing galactose-metabolizing enzymes. Mol. Cell. Biol., 4, 994-996.
25. Messenguy, F. and Dubois, E. (2000) Regulation of arginine metabolism in Saccharomyces cerevisiae: a network of specific and pleiotropic proteins in response to multiple environmental signals. Food Technol. Biotechnol., 38, 277-285.
26. Messenguy, F. and Dubois, E. (2003) Role of MADS box proteins and their cofactors in combinatorial control of gene expression and cell development. Gene, 316, 1-21.
27. Qiu, H., Dubois, E. and Messenguy, F. (1991) Dissection of the bifunctional ARGRII protein involved in the regulation of arginine anabolic and catabolic pathways. Mol. Cell. Biol., 11, 2169-2179.
28. Grenson, M., Mousset, M., Wiame, J. and Béchet, J. (1966) Multiplicity of the amino acid permeases in Saccharomyces cerevisiae. Biochim. Biophys. Acta, 127, 325-338.
29. Amar, N., Messenguy, F., El Bakkoury, M. and Dubois, E. (2000) ArgRII, a component of the ArgR-Mcm1 complex involved in the control of arginine metabolism in Saccharomyces cerevisiae, is the sensor of arginine. Mol. Cell. Biol., 20, 2087-2097.
30. Brachmann, C., Davies, A., Cost, G., Caputo, E., Li, J., Hieter, P. and Boeke, J.D. (1998) Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast, 14, 115-132.
31. Winston, F., Dollard, C. and Ricupero-Hovasse, S. (1995) Construction of a set of convenient Saccharomyces strains that are Isogenic to S288C. Yeast, 11, 53-55.
32. Ito, H., Fukuda, Y., Murata, K. and Kimura, A. (1983) Transformation of intact yeast cells treated with alkali cations. J. Bacteriol., 153, 163-168.
33. Georis, I., Tate, J., Cooper, T. and Dubois, E. (2008) Tor pathway control of the nitrogen-responsive DAL5 gene bifurcates at the level of Gln3 and Gat1 regulation in Saccharomyces cerevisiae. J. Biol. Chem., 283, 8919-8929.
34. Schmitt, M.E., Brown, T.A. and Trumpower, B.L. (1990) A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res., 18, 3091-3092.
35. Boeke, J.D., Lacroute, F. and Fink, G.R. (1984) A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol. Gen. Genet., 197, 345-346.
36. Hartzog, P., Nicholson, B. and McCusker, J. (2005) Cytosine deaminase MX cassettes as positive/negative selectable markers in Saccharomyces cerevisiae. Yeast, 22, 789-798.
37. Lagunas, R. and Moreno, E. (1992) Inhibition of glycolysis by 2-deoxygalactose in Saccharomyces cerevisiae. Yeast, 8, 107-115.
38. Béchet, J., Grenson, M. and Wiame, J.M. (1970) Mutations affecting repressibility of arginine biosynthetic enzymes in Saccharomyces cerevisiae. Eur. J. Biochem., 12, 31-39.
39. Tobiason, D. and Seifert, H. (2006) The Obligate Human Pathogen, Neisseria gonorrhoeae, Is Polyploid. PLoS Biol., 4, 1069-1078.
40. Michelsen, O., Hansen, F., Albrechtsen, B. and Jensen, P. (2010) The MG1363 and IL1403 laboratory strains of Lactococcus lactis and several dairy strains are diploid. J. Bacteriol., 192, 1058-1065.
41. Breuert, S., Allers, T., Spohn, G. and Soppa, J. (2006) Regulated polyploidy in halophilic archaea. PLos One, 1, e92.