Vogesella mureinivorans sp. nov., a peptidoglycan-degrading bacterium from lake water

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 10, 2010, Pages 2467-2472

  Jørgensen, Niels O G ^a   Brandt, Kristian K ^a   Nybroe, Ole ^a   Hansen, Michael ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CHITINASE; FATTY ACID; LAKE WATER; LYSOZYME; PEPTIDOGLYCAN; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BETAPROTEOBACTERIA; DENMARK; DNA HYBRIDIZATION; ENZYME ACTIVITY; GENE SEQUENCE; MONOPHYLY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DEGRADATION; VOGESELLA INDIGOFERA; VOGESELLA LACUS; VOGESELLA MUREINIVORANS; VOGESELLA PERLUCIDA;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHITINASE; CLUSTER ANALYSIS; DENMARK; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FRESH WATER; MICROSCOPY, ELECTRON, SCANNING; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; MURAMIDASE; NEISSERIACEAE; NUCLEIC ACID HYBRIDIZATION; PEPTIDOGLYCAN; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; VOGESELLA; VOGESELLA INDIGOFERA;

EID: 78049369213     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.018630-0     Document Type: Article

References (22)

1. Brandt, K. K., Patel, B. K. C. & Ingvorsen, K. (1999). Desulfocella halophila gen. nov., sp. nov., a halophilic, fatty-acid-oxidizing, sulfate-reducing bacterium isolated from sediments of the Great Salt Lake. Int J Syst Bacteriol 49, 193-200.
2. Brandt, K. K., Petersen, A., Holm, P. E. & Nybroe, O. (2006). Decreased abundance and diversity of culturable Pseudomonas spp. populations with increasing copper exposure in the sugar beet rhizosphere. FEMS Microbiol Ecol 56, 281-291.
3. Cauchie, H.-M. (2002). Chitin production by arthropods in the hydrosphere. Hydrobiologia 470, 63-95.
4. Chou, Y.-J., Chou, J.-H., Lin, M.-C., Arun, A. B., Young, C.-C. & Chen, W.-M. (2008). Vogesella perlucida sp. nov., a non-pigmented bacterium isolated from spring water. Int J Syst Evol Microbiol 58, 2677-2681.
5. Chou, J.-H., Chou, Y.-J., Arun, A.-B., Young, C.-C., Chen, C. A., Wang, J.-T. & Chen, W.-M. (2009). Vogesella lacus sp. nov., isolated from a soft-shell turtle culture pond. Int J Syst Evol Microbiol 59, 2629-2632.
6. Cole, J. R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R. J., Kulam-Syed-Mohideen, A. S., McGarrell, D. M., Marsh, T. & other authors (2009). The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37, D141-D145.
7. De Ley, J., Cattoir, H. & Reynaert, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
8. Eisenstadt, E., Carlton, B. C. & Brown, B. J. (1994). Gene mutation. In Methods for General and Molecular Bacteriology, pp. 297-316. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
9. Frette, L., Johnsen, K., Jørgensen, N. O. G., Nybroe, O. & Kroer, N. (2004). Functional characteristics of culturable bacterioplankton from marine and estuarine environments. Int Microbiol 7, 219-227.
10. Grimes, D. J., Woese, C. R., MacDonell, M. T. & Colwell, R. R. (1997). Systematic study of the genus Vogesella gen. nov. and its type species, Vogesella indigofera comb. nov. Int J Syst Bacteriol 47, 19-27.
11. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
12. Hugh, R. & Leifson, E. (1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various Gram negative bacteria. J Bacteriol 66, 24-26.
13. Jeffries, C. D., Holtman, D. F. & Guse, D. G. (1957). Rapid method for determining the activity of microorganisms on nucleic acids. J Bacteriol 73, 590-591.
14. Johnson, M., Zaretskaya, I., Raytselis, Y., Merezhuk, Y., McGinnis, S. & Madden, T. L. (2008). NCBI BLAST: a better web interface. Nucleic Acids Res 36, W5-W9.
15. Jørgensen, N. O. G., Brandt, K. K., Nybroe, O. & Hansen, M. (2009). Delftia lacustris, sp. nov., a peptidoglycan-degrading bacterium from freshwater and emended description of D. tsuruhatensis as a peptidoglycan- degrading bacterium. Int J Syst Evol Microbiol 59, 2195-2199.
16. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A. & other authors (2007). CLUSTAL W and CLUSTAL X version 2.0. Bioinformatics 23, 2947-2948.
17. Nagata, T., Meon, B. & Kirchman, D. L. (2003). Microbial degradation of peptidoglycan in seawater. Limnol Oceanogr 48, 745-754.
18. O'Brien, M. & Colwell, R. R. (1987). A rapid test for chitinase activity that uses 4-methylumbelliferyl-N-acetyl-beta-D-glucosaminide. Appl Environ Microbiol 53, 1718-1720.
19. 13C analysis of unique amino acids in the bacterial peptidoglycan cell wall. FEMS Microbiol Ecol 25, 229-240.
20. Watson, L. P., McKee, A. E. & Merrel, B. R. (1980). Preparation of microbiological specimens for scanning electron microscopy. Scan Electron Microsc 2, 45-56.
21. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
22. Whitman, W. B., Coleman, D. C. & Wiebe, W. J. (1998). Prokaryotes: The unseen majority. Proc Natl Acad Sci U S A 95, 6578-6583.