From spike to graph-A complete automated single-spike analysis

Journal of Neuroscience Methods

Volumn 193, Issue 2, 2010, Pages 271-280

  Friedrich, Reut ^a   Ashery, Uri ^a  

^a TEL AVIV UNIVERSITY   (Israel)

Author keywords

Amperometry; Analysis; Chromaffin; SNR; Spike; Statistics

Indexed keywords

ACCURACY; ALGORITHM; AMPEROMETRY; ARTICLE; AUTOMATION; KINETICS; PRIORITY JOURNAL; SIGNAL DETECTION; SIGNAL NOISE RATIO; SPIKE WAVE; STATISTICAL ANALYSIS;

ACTION POTENTIALS; ALGORITHMS; ANIMALS; ELECTROPHYSIOLOGY; MODELS, NEUROLOGICAL; NEURONS; PROBABILITY; SIGNAL PROCESSING, COMPUTER-ASSISTED; STATISTICS, NONPARAMETRIC;

EID: 78049359989     PISSN: 01650270     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jneumeth.2010.09.004     Document Type: Article

References (34)

1. Albillos A., Dernick G., Horstmann H., Almers W., Alvarez de Toledo G., Lindau M. The exocytotic event in chromaffin cells revealed by patch amperometry. Nature 1997, 389:509-512.
2. Amatore C., Arbault S., Bonifas I., Bouret Y., Erard M., Ewing A., et al. Correlation between vesicle quantal size and fusion pore release in chromaffin cell exocytosis. Biophys J 2005, 88:4411-4420.
3. Amatore C., Arbault S., Bonifas I., Guille M. Quantitative investigations of amperometric spike feet suggest different controlling factors of the fusion pore in exocytosis at chromaffin cells. Biophys Chem 2009, 143:124-131.
4. Borisovska M., Zhao Y., Tsytsyura Y., Glyvuk N., Takamori S., Matti U., et al. v-SNAREs control exocytosis of vesicles from priming to fusion. EMBO J 2005, 24:2114-2126.
5. Bruns D., Riedel D., Klingauf J., Jahn R. Quantal release of serotonin. Neuron 2000, 28:205-220.
6. Burgoyne R., Barclay J. Splitting the quantum: regulation of quantal release during vesicle fusion. Trends Neurosci 2002, 25:176-178.
7. Chow R., von Rüden L. Electrochemical detection of secretion from single cell. Single-channel recording 1995, 245-272. Plenum Press, New York and London. B. Sakmann, E. Neher (Eds.).
8. Colliver T., Hess E., Pothos E., Sulzer D., Ewing A. Quantitative and statistical analysis of the shape of amperometric spikes recorded from two populations of cells. J Neurochem 2000, 74:1086-1097.
9. Elhamdani A., Palfrey H., Artalejo C. Quantal size is dependent on stimulation frequency and calcium entry in calf chromaffin cells. Neuron 2001, 31:819-830.
10. Feinshreiber L., Singer-Lahat D., Friedrich R., Matti U., Sheinin A., Yizhar O., et al. Non-conducting function of the Kv2.1 channel recruits vesicles in neuroendocrine and nerve cells. J Cell Sci 2010, 123:1940-1947.
11. Filliben J., Heckert A NIST/SEMATECH e-handbook of statistical methods 2007, C. Croarkin, P. Tobias (Eds.).
12. Friedrich R., Groffen A., Connell E., van Weering J., Gutman O., Henis Y., et al. DOC2B acts as a calcium switch and enhances vesicle fusion. J Neurosci 2008, 28:6794-6806.
13. Fulop T., Smith C. Matching native electrical stimulation by graded chemical stimulation in isolated mouse adrenal chromaffin cells. J Neurosci Methods 2007, 166:195-202.
14. Giuseppe C. Dunn's procedure for multiple, nonparametric, comparisons (m. file for MATLAB); 2007.
15. Gomez J., Brioso M., Machado J., Sanchez J., Borges R. New approaches for analysis of amperometrical recordings. Ann N Y Acad Sci 2002, 971:647-654.
16. Hof D. AmperoStat. 2003: Igor macro.
17. Jankowski G., Schroeder T., Edward L., Wightman R. Temporal characteristics of quantal secretion of catecholamine from adrenal medullary cells. J Biol Chem 1993, 268:14694-14700.
18. Kirk R. Experimental design 1982, Brooks/Cole Publishing Company. A Division of Wadsworth, Inc. 2nd ed.
19. Koh D. Carbon fiber amperometry in the study of ion channels and secretion. Methods in molecular biology. ion channels: methods and protocols 2006, Humana Press, Inc., Totowa, NJ. J. Stockand, M. Shapiro (Eds.).
20. Lindau M., Alvarez de Toledo G. The fusion pore. Biochim Biophys Acta 2003, 1641:167-173.
21. 2+ influx. J Biol Chem 2010, 285:6996-7005.
22. 2+-channel modify fusion-pore kinetics. Channels (Austin) 2007, 1:377-386.
23. MATLAB MATLAB, Statistics Toolbox 2004, The Mathworks, Inc.
24. Mosharov E. Analysis of single-vesicle exocytotic events recorded by amperometry. Methods Mol Biol 2008, 440:315-327.
25. Mosharov E., Sulzer D. Analysis of exocytotic events recorded by amperometry. Nat Methods 2005, 2:651-658.
26. Quinn G., Keough M. Experimental design and data analysis for biologists 2002, The Press Syndicate of the University of Cambridge, Cambridge.
27. Segura F., Brioso M., Goómez J., Machado J., Borges R. Automatic analysis for amperometrical recordings of exocytosis. J Neurosci Methods 2000, 103:151-156.
28. Sheskin D. Handbook of parametric and nonparametric statistical procedures 1997, CRC Press.
29. Sorensen J., Nagy G., Varoqueaux F., Nehring R., Brose N., Wilson M., et al. Differential control of the releasable vesicle pools by SNAP-25 splice variants and SNAP-23. Cell 2003, 114:75-86.
30. Welch B. On the comparision of several mean values: an alternative approach. Biometrika 1951, 38:330-336.
31. Wightman R., Jankowski J., Kennedy R., Kawagoe K., Schroeder T., Leszczyszyn D., et al. Temporally resolved catecholamine spikes correspond to single vesicle release from individual chromaffin cells. Proc Natl Acad Sci USA 1991, 88:10754-10758.
32. Yizhar O., Matti U., Melamed R., Hagalili Y., Bruns D., Rettig J., et al. Tomosyn inhibits priming of large dense-core vesicles in a calcium-dependent manner. Proc Natl Acad Sci USA 2004, 101:2578-2583.
33. 2+-triggered exocytosis from PC12 cells. J Gen Physiol 2008, 131:117-124.
34. Zhou Z., Misler S., Chow R. Rapid fluctuations in transmitter release from single vesicles in bovine adrenal chromaffin cells. Biophys J 1996, 70:1543-1552.