메뉴 건너뛰기




Volumn 57, Issue 2, 2010, Pages 878-887

Expanded phylogeny of myxobacteria and evidence for cultivation of the 'unculturables'

Author keywords

16S rDNA; Delta proteobacteria; Myxobacteria; Phylogeny; Sorangiineae; Unculturable

Indexed keywords

BACTERIAL DNA; RIBOSOME DNA;

EID: 78049356036     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2010.08.028     Document Type: Article
Times cited : (74)

References (34)
  • 1
    • 78049357517 scopus 로고
    • Family III. Cystobacteraceae
    • Williams and Wilkins, Baltimore, J. Staley, M. Bryant, N. Pfennig, J. Holt (Eds.)
    • Brockman E.R., McCurdy H.D. Family III. Cystobacteraceae. Bergey's Manual of Systematic Bacteriology 1989, 2149-2158. Williams and Wilkins, Baltimore. J. Staley, M. Bryant, N. Pfennig, J. Holt (Eds.).
    • (1989) Bergey's Manual of Systematic Bacteriology , pp. 2149-2158
    • Brockman, E.R.1    McCurdy, H.D.2
  • 2
    • 0036250038 scopus 로고    scopus 로고
    • Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respiration
    • Coates J.D., Kimberly A., Chakraborty C.R., ÓConnor S.M., Achenbach L.A. Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respiration. Appl. Environ. Microbiol. 2002, 68:2445-2452.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2445-2452
    • Coates, J.D.1    Kimberly, A.2    Chakraborty, C.R.3    Ó Connor, S.M.4    Achenbach, L.A.5
  • 3
    • 0033818173 scopus 로고    scopus 로고
    • Biology and global distribution of myxobacteria in soils
    • Dawid W. Biology and global distribution of myxobacteria in soils. FEMS Microbiol. Rev. 2000, 24:403-427.
    • (2000) FEMS Microbiol. Rev. , vol.24 , pp. 403-427
    • Dawid, W.1
  • 4
    • 0343094723 scopus 로고
    • Psychrophilic myxobacteria from Antarctic soils
    • Dawid W., Gallikowski C.A., Hirsch P. Psychrophilic myxobacteria from Antarctic soils. Polarforschung 1988, 58:271-278.
    • (1988) Polarforschung , vol.58 , pp. 271-278
    • Dawid, W.1    Gallikowski, C.A.2    Hirsch, P.3
  • 6
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 7
    • 0036328445 scopus 로고    scopus 로고
    • Haliangium ochraceum gen. nov., sp. nov. and Haliangium tepidum sp. nov.: Novel moderately halophilic myxobacteria isolated from coastal saline environments
    • Fudou R., Jojima Y., Iizuka T., Yamanaka S. Haliangium ochraceum gen. nov., sp. nov. and Haliangium tepidum sp. nov.: Novel moderately halophilic myxobacteria isolated from coastal saline environments. J. Gen. Appl. Microbiol. 2002, 48:109-115.
    • (2002) J. Gen. Appl. Microbiol. , vol.48 , pp. 109-115
    • Fudou, R.1    Jojima, Y.2    Iizuka, T.3    Yamanaka, S.4
  • 8
    • 64249172680 scopus 로고    scopus 로고
    • Discovering natural products from myxobacteria with emphasis on rare producer strains in combination with improved analytical methods
    • Academic press, Burlington, D. Hopwood (Ed.)
    • Garcia R.O., Krug D., Müller R. Discovering natural products from myxobacteria with emphasis on rare producer strains in combination with improved analytical methods. Methods in Enzymology: Complex Enzymes in Microbial Natural Product Biosynthesis 2009, 59-91. Academic press, Burlington, vol. 458. D. Hopwood (Ed.).
    • (2009) Methods in Enzymology: Complex Enzymes in Microbial Natural Product Biosynthesis , vol.458 , pp. 59-91
    • Garcia, R.O.1    Krug, D.2    Müller, R.3
  • 9
    • 67651114064 scopus 로고    scopus 로고
    • Phaselicystis flava gen. nov., sp. nov., an arachidonic acid-containing soil myxobacterium, and the description of Phaselicystidaceae fam. nov.
    • Garcia R.O., Reichenbach H., Ring M.W., Müller R. Phaselicystis flava gen. nov., sp. nov., an arachidonic acid-containing soil myxobacterium, and the description of Phaselicystidaceae fam. nov. Int. J. Syst. Evol. Microbiol. 2009, 59:1524-1530.
    • (2009) Int. J. Syst. Evol. Microbiol. , vol.59 , pp. 1524-1530
    • Garcia, R.O.1    Reichenbach, H.2    Ring, M.W.3    Müller, R.4
  • 10
    • 18944374819 scopus 로고    scopus 로고
    • Moderately thermophilic myxobacteria: novel potential for production of natural products
    • Gerth K., Müller R. Moderately thermophilic myxobacteria: novel potential for production of natural products. Environ. Microbiol. 2005, 7:874-880.
    • (2005) Environ. Microbiol. , vol.7 , pp. 874-880
    • Gerth, K.1    Müller, R.2
  • 11
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., Gascuel O. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 12
    • 0037216056 scopus 로고    scopus 로고
    • Plesiocystis pacifica gen. nov., sp. nov., a marine myxobacterium that contains dihydrogenated menaquinone, isolated from the pacific coasts of Japan
    • Iizuka T., Jojima Y., Fudou R., Hiraishi A., Ahn J.W., Yamanaka S. Plesiocystis pacifica gen. nov., sp. nov., a marine myxobacterium that contains dihydrogenated menaquinone, isolated from the pacific coasts of Japan. Int. J. Syst. Evol. Microbiol. 2003, 53:189-195.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 189-195
    • Iizuka, T.1    Jojima, Y.2    Fudou, R.3    Hiraishi, A.4    Ahn, J.W.5    Yamanaka, S.6
  • 13
    • 0038005026 scopus 로고    scopus 로고
    • Enhygromyxa salina gen. nov., sp. nov., a slightly halophilic myxobacterium isolated from the coastal areas of Japan
    • Iizuka T., Jojima Y., Fudou R., Tokura M., Hiraishi A., Yamanaka S. Enhygromyxa salina gen. nov., sp. nov., a slightly halophilic myxobacterium isolated from the coastal areas of Japan. Syst. Appl. Microbiol. 2003, 26:189-196.
    • (2003) Syst. Appl. Microbiol. , vol.26 , pp. 189-196
    • Iizuka, T.1    Jojima, Y.2    Fudou, R.3    Tokura, M.4    Hiraishi, A.5    Yamanaka, S.6
  • 14
    • 33748949561 scopus 로고    scopus 로고
    • Miuraenamides A and B, novel antimicrobial cyclic depsipeptides from a new slightly halophilic myxobacterium: taxonomy, production, and biological properties
    • Iizuka T., Fudou R., Jojima Y., Ogawa S., Yamanaka S., Inukai Y., Ojika M. Miuraenamides A and B, novel antimicrobial cyclic depsipeptides from a new slightly halophilic myxobacterium: taxonomy, production, and biological properties. J. Antibiot. 2006, 59:385-391.
    • (2006) J. Antibiot. , vol.59 , pp. 385-391
    • Iizuka, T.1    Fudou, R.2    Jojima, Y.3    Ogawa, S.4    Yamanaka, S.5    Inukai, Y.6    Ojika, M.7
  • 15
    • 84977993704 scopus 로고    scopus 로고
    • Enrichment and phylogenetic analysis of moderately thermophilic myxobacteria from hot springs in Japan
    • Iizuka T., Tokura M., Jojima Y., Hiraishi A., Yamanaka S., Fudou R. Enrichment and phylogenetic analysis of moderately thermophilic myxobacteria from hot springs in Japan. Microbes Environ. 2006, 21:189-199.
    • (2006) Microbes Environ. , vol.21 , pp. 189-199
    • Iizuka, T.1    Tokura, M.2    Jojima, Y.3    Hiraishi, A.4    Yamanaka, S.5    Fudou, R.6
  • 16
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Academic Press, New York, H.N. Munro (Ed.)
    • Jukes T.H., Cantor C.R. Evolution of protein molecules. Mammalian Protein Metabolism 1969, 21-132. Academic Press, New York. H.N. Munro (Ed.).
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 17
    • 0027441755 scopus 로고
    • Roland Thaxteŕs legacy and the origins of multicellular development
    • Kaiser D. Roland Thaxteŕs legacy and the origins of multicellular development. Genetics 1993, 135:249-254.
    • (1993) Genetics , vol.135 , pp. 249-254
    • Kaiser, D.1
  • 18
    • 58949083243 scopus 로고    scopus 로고
    • T, the current type strain of Melittangium lichenicola, with ATCC 25946. Request for an opinion
    • T, the current type strain of Melittangium lichenicola, with ATCC 25946. Request for an opinion. Int. J. Syst. Evol. Microbiol. 2008, 58:2991-2992.
    • (2008) Int. J. Syst. Evol. Microbiol. , vol.58 , pp. 2991-2992
    • Lang, E.1    Spröer, C.2
  • 19
    • 70349312824 scopus 로고    scopus 로고
    • Emended descriptions of the genera Myxococcus and Corallococcus, typification of the species Myxococcus stipitatus and Myxococcus macrosporus and a proposal that they be represented by neotype strains. Request for an opinion
    • Lang E., Stackebrandt E. Emended descriptions of the genera Myxococcus and Corallococcus, typification of the species Myxococcus stipitatus and Myxococcus macrosporus and a proposal that they be represented by neotype strains. Request for an opinion. Int. J. Syst. Evol. Microbiol. 2009, 59:2122-2128.
    • (2009) Int. J. Syst. Evol. Microbiol. , vol.59 , pp. 2122-2128
    • Lang, E.1    Stackebrandt, E.2
  • 21
    • 65349131039 scopus 로고
    • Studies on the taxonomy of the Myxobacterales: IV Melittangium
    • McCurdy H.A. Studies on the taxonomy of the Myxobacterales: IV Melittangium. Int. J. Syst. Bacteriol. 1971, 21:50-54.
    • (1971) Int. J. Syst. Bacteriol. , vol.21 , pp. 50-54
    • McCurdy, H.A.1
  • 22
    • 0028976424 scopus 로고
    • Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
    • Moyer C.L., Dobbs F.C., Karl D.M. Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 1995, 61:1555-1562.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1555-1562
    • Moyer, C.L.1    Dobbs, F.C.2    Karl, D.M.3
  • 23
    • 38449106572 scopus 로고    scopus 로고
    • Miuraenamides: antimicrobial cyclic depsipeptides isolated from a rare and slightly halophilic myxobacterium
    • Ojika M., Inukai Y., Kito Y., Hirata M., Iizuka T., Fudou R. Miuraenamides: antimicrobial cyclic depsipeptides isolated from a rare and slightly halophilic myxobacterium. Chem. Asian J. 2008, 3:126-133.
    • (2008) Chem. Asian J. , vol.3 , pp. 126-133
    • Ojika, M.1    Inukai, Y.2    Kito, Y.3    Hirata, M.4    Iizuka, T.5    Fudou, R.6
  • 24
    • 0002728998 scopus 로고
    • Myxobacteria: a most peculiar group of social prokaryotes
    • Springer, New York, E. Rosenberg (Ed.)
    • Reichenbach H. Myxobacteria: a most peculiar group of social prokaryotes. Myxobacteria: Development and Cell Interactions 1984, 1-50. Springer, New York. E. Rosenberg (Ed.).
    • (1984) Myxobacteria: Development and Cell Interactions , pp. 1-50
    • Reichenbach, H.1
  • 25
    • 33750000141 scopus 로고    scopus 로고
    • Order VIII. Myxococcales
    • Springer, New York, D.J. Brenner, N.R. Krieg, J.T. Staley (Eds.)
    • Reichenbach H. Order VIII. Myxococcales. Bergey's Manual of Systematic Bacteriology 2005, 1059-1144. Springer, New York. D.J. Brenner, N.R. Krieg, J.T. Staley (Eds.).
    • (2005) Bergey's Manual of Systematic Bacteriology , pp. 1059-1144
    • Reichenbach, H.1
  • 26
    • 33750028270 scopus 로고    scopus 로고
    • Byssovorax cruenta gen. nov., sp. nov., nom. rev., a cellulose-degrading myxobacterium: rediscovery of 'Myxococcus cruentus' Thaxter 1897
    • Reichenbach H., Lang E., Schumann P., Spröer C. Byssovorax cruenta gen. nov., sp. nov., nom. rev., a cellulose-degrading myxobacterium: rediscovery of 'Myxococcus cruentus' Thaxter 1897. Int. J. Syst. Evol. Microbiol. 2006, 56:2357-2363.
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 2357-2363
    • Reichenbach, H.1    Lang, E.2    Schumann, P.3    Spröer, C.4
  • 27
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 28
    • 0036154232 scopus 로고    scopus 로고
    • Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium
    • Sanford R., Cole J., Tiedje J. Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium. Appl. Environ. Microbiol. 2002, 68:893-900.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 893-900
    • Sanford, R.1    Cole, J.2    Tiedje, J.3
  • 29
    • 33749412204 scopus 로고    scopus 로고
    • The myxobacteria
    • Springer-Verlag, Berlin, M. Dworkin (Ed.)
    • Shimkets L., Dworkin M., Reichenbach H. The myxobacteria. The Prokaryotes 2006, 31-115. Springer-Verlag, Berlin. M. Dworkin (Ed.).
    • (2006) The Prokaryotes , pp. 31-115
    • Shimkets, L.1    Dworkin, M.2    Reichenbach, H.3
  • 30
    • 0026668763 scopus 로고
    • A phylogenetic analysis of the myxobacteria: basis for their classification
    • Shimkets L., Woese C.R. A phylogenetic analysis of the myxobacteria: basis for their classification. Proc. Natl. Acad. Sci. USA. 1992, 89:9459-9463.
    • (1992) Proc. Natl. Acad. Sci. USA. , vol.89 , pp. 9459-9463
    • Shimkets, L.1    Woese, C.R.2
  • 31
    • 0033059927 scopus 로고    scopus 로고
    • The correlation between morphological and phylogenetic classification of myxobacteria
    • Spröer C., Reichenbach H., Stackebrandt E. The correlation between morphological and phylogenetic classification of myxobacteria. Int. J. Syst. Bacteriol. 1999, 49:1255-1262.
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 1255-1262
    • Spröer, C.1    Reichenbach, H.2    Stackebrandt, E.3
  • 32
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese C.R. Bacterial evolution. Microbiol. Rev. 1987, 51:221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 33
    • 25144521051 scopus 로고    scopus 로고
    • Exploring the diversity of myxobacteria in a soil niche by myxobacteria-specific primers and probes
    • Wu Z.H., Jiang D.M., Li P., Li Y.Z. Exploring the diversity of myxobacteria in a soil niche by myxobacteria-specific primers and probes. Environ. Microbiol. 2005, 7:1602-1610.
    • (2005) Environ. Microbiol. , vol.7 , pp. 1602-1610
    • Wu, Z.H.1    Jiang, D.M.2    Li, P.3    Li, Y.Z.4
  • 34
    • 0036038267 scopus 로고    scopus 로고
    • Characterization of a bioflocculant produced by the marine myxobacterium Nannocystis sp. NU-2
    • Zhang J., Liu Z., Wang S., Jiang P. Characterization of a bioflocculant produced by the marine myxobacterium Nannocystis sp. NU-2. Appl. Microbiol. Biotechnol. 2002, 59:517-522.
    • (2002) Appl. Microbiol. Biotechnol. , vol.59 , pp. 517-522
    • Zhang, J.1    Liu, Z.2    Wang, S.3    Jiang, P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.