Analysis of the Albumin/α-Fetoprotein/Afamin/Group specific component gene family in the context of zebrafish liver differentiation

Gene Expression Patterns

Volumn 10, Issue 6, 2010, Pages 237-243

  Noël, Emily S ^a,c   Dos Reis, Mario ^a   Arain, Zoya ^b   Ober, Elke A ^a  

^a NATIONAL INSTITUTE FOR MEDICAL RESEARCH   (United Kingdom)

^b Watford Girls Grammar School   (United Kingdom)

^c UNIVERSITY MEDICAL CENTER UTRECHT   (Netherlands)

Author keywords

Afamin; Albumin; Cloche; Differentiation; Evolution; Eye; Group specific component; Hdac1; Liver; Vitamin D binding protein; Zebrafish; Fetoprotein

Indexed keywords

AFAMIN; ALBUMIN; ALPHA FETOPROTEIN; CELL PROTEIN; HISTONE DEACETYLASE 1; MESSENGER RNA; UNCLASSIFIED DRUG; VITAMIN D BINDING PROTEIN; ALBUMINOID; SERUM ALBUMIN;

ARTICLE; EMBRYO; FERTILIZATION; GENOME; LIVER DEVELOPMENT; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN ISOLATION; VASCULARIZATION; ZEBRA FISH; AMINO ACID SEQUENCE; ANIMAL; ANIMAL EMBRYO; BIOLOGICAL MODEL; CELL DIFFERENTIATION; GENE EXPRESSION PROFILING; GENETICS; LIVER; METABOLISM; MOLECULAR GENETICS; MULTIGENE FAMILY; PRENATAL DEVELOPMENT; SEQUENCE HOMOLOGY; TRANSGENIC ANIMAL;

DANIO RERIO; MAMMALIA; VERTEBRATA;

ALBUMINS; ALPHA-FETOPROTEINS; AMINO ACID SEQUENCE; ANIMALS; ANIMALS, GENETICALLY MODIFIED; CELL DIFFERENTIATION; EMBRYO, NONMAMMALIAN; GENE EXPRESSION PROFILING; LIVER; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; SEQUENCE HOMOLOGY, AMINO ACID; SERUM ALBUMIN; VITAMIN D-BINDING PROTEIN; ZEBRAFISH;

EID: 78049257147     PISSN: 1567133X     EISSN: 18727298     Source Type: Journal    
DOI: 10.1016/j.gep.2010.05.002     Document Type: Article

References (46)

1. Alexander, J., Stainier, D.Y., Yelon, D., 1998. Screening mosaic F1 females for mutations affecting zebrafish heart induction and patterning. Dev Genet 22, 288-299.
2. Belanger, L., Roy, S., Allard, D., 1994. New albumin gene 3' adjacent to the alpha 1- fetoprotein locus. J Biol Chem 269, 5481-5484.
3. Berde, C.B., Hudson, B.S., Simoni, R.D., Sklar, L.A., 1979a. Human serum albumin. Spectroscopic studies of binding and proximity relationships for fatty acids and bilirubin. J Biol Chem 254, 391-400.
4. Berde, C.B., Nagai, M., Deutsch, H.F., 1979b. Human alpha-fetoprotein. Fluorescence studies on binding and proximity relationships for fatty acids and bilirubin. J Biol Chem 254, 12609-12614.
5. Byrnes, L., Gannon, F., 1990. Atlantic salmon (Salmo salar) serum albumin: cDNA sequence, evolution, and tissue expression. DNA Cell Biol 9, 647-655.
6. Cascio, S., Zaret, K.S., 1991. Hepatocyte differentiation initiates during endodermalmesenchymal interactions prior to liver formation. Development 113, 217-225
7. Cheng, W., Guo, L., Zhang, Z., Soo, H.M., Wen, C., Wu, W., Peng, J., 2006. HNF factors form a network to regulate liver-enriched genes in zebrafish. Dev Biol 294, 482-496.
8. Cooke, N.E., David, E.V., 1985. Serum vitamin D-binding protein is a third member of the albumin and alpha fetoprotein gene family. J Clin Invest 76, 2420-2424.
9. Daiger, S.P., Schanfield, M.S., Cavalli-Sforza, L.L., 1975. Group-specific component (Gc) proteins bind vitamin D and 25-hydroxyvitamin D. Proc Natl Acad Sci U S A 72, 2076-2080.
10. Drummond, A.J., Rambaut, A., 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7, 214.
11. Farooq, M., Sulochana, K.N., Pan, X., To, J., Sheng, D., Gong, Z., Ge, R., 2008. Histone deacetylase 3 (hdac3) is specifically required for liver development in zebrafish. Dev Biol 317, 336-353.
12. Field, H.A., Ober, E.A., Roeser, T., Stainier, D.Y., 2003. Formation of the digestive system in zebrafish. I. Liver morphogenesis. Dev Biol 253, 279-290.
13. Flouriot, G., Ducouret, B., Byrnes, L., Valotaire, Y., 1998. Transcriptional regulation of expression of the rainbow trout albumin gene by estrogen. J Mol Endocrinol 20, 355-362.
14. Haefliger, D.N., Moskaitis, J.E., Schoenberg, D.R., Wahli, W., 1989. Amphibian albumins as members of the albumin, alpha-fetoprotein, vitamin D-binding protein multigene family. J Mol Evol 29, 344-354.
15. Kasahara, M., Naruse, K., Sasaki, S., Nakatani, Y., Qu, W., Ahsan, B., Yamada, T., Nagayasu, Y., Doi, K., Kasai, Y., Jindo, T., Kobayashi, D., Shimada, A., Toyoda, A., Kuroki, Y., Fujiyama, A., Sasaki, T., Shimizu, A., Asakawa, S., Shimizu, N., Hashimoto, S., Yang, J., Lee, Y., Matsushima, K., Sugano, S., Sakaizumi, M., Narita, T., Ohishi, K., Haga, S., Ohta, F., Nomoto, H., Nogata, K., Morishita, T., Endo, T., Shin, I.T., Takeda, H., Morishita, S., Kohara, Y., 2007. The medaka draft genomeand insights into vertebrate genome evolution. Nature 447, 714-719.
16. Korzh, S., Emelyanov, A., Korzh, V., 2001. Developmental analysis of ceruloplasmin gene and liver formation in zebrafish. Mech Dev 103, 137-139.
17. Korzh, S., Pan, X., Garcia-Lecea, M., Winata, C.L., Pan, X., Wohland, T., Korzh, V., Gong, Z., 2008. Requirement of vasculogenesis and blood circulation in late stages of liver growth in zebrafish. BMC Dev Biol 8, 84.
18. Krylov, D.M., Wolf, Y.I., Rogozin, I.B., Koonin, E.V., 2003. Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution. Genome Res 13, 2229-2235.
19. Li, T., Huang, J., Jiang, Y., Zeng, Y., He, F., Zhang, M.Q., Han, Z., Zhang, X., 2009. Multistage analysis of gene expression and transcription regulation in C57/B6 mouse liver development. Genomics 93, 235-242.
20. Lichenstein, H.S., Lyons, D.E., Wurfel, M.M., Johnson, D.A., McGinley, M.D., Leidli, J.C., Trollinger, D.B., Mayer, J.P., Wright, S.D., Zukowski, M.M., 1994. Afamin is a new member of the albumin, alpha-fetoprotein, and vitamin D-binding protein gene family. J Biol Chem 269, 18149-18154.
21. Lin, W.W., Chen, L.H., Chen, M.C., Kao, H.W., 2009. Differential expression of zebrafish gpia and gpib during development. Gene Expr Patterns 9, 238-245.
22. Loytynoja, A., Goldman, N., 2008. Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis. Science 320, 1632-1635.
23. Matthews, R.P., Lorent, K., Russo, P., Pack, M., 2004. The zebrafish onecut gene hnf-6 functions in an evolutionarily conserved genetic pathway that regulates vertebrate biliary development. Dev Biol 274, 245-259.
24. McLeod, J.F., Cooke, N.E., 1989. The vitamin D-binding protein, alpha-fetoprotein, albumin multigene family: detection of transcripts in multiple tissues. J Biol Chem 264, 21760-21769.
25. Metcalf, V., Brennan, S., Chambers, G., George, P., 1998. The albumins of Chinook salmon (Oncorhynchus tshawytscha) and brown trout (Salmo trutta) appear to lack a propeptide. Arch Biochem Biophys 350, 239-244.
26. Metcalf, V.J., Brennan, S.O., Chambers, G., George, P.M., 1999a. High density lipoprotein (HDL), and not albumin, is the major palmitate binding protein in New Zealand long-finned (Anguilla dieffenbachii) and short-finned eel (Anguilla australis schmidtii) plasma. Biochim Biophys Acta 1429, 467-475.
27. Metcalf, V.J., Brennan, S.O., George, P.M., 1999b. The Antarctic toothfish (Dissostichus mawsoni) lacks plasma albumin and utilises high density lipoprotein as its major palmitate binding protein. Comp Biochem Physiol B, Biochem Mol Biol 124, 147-155.
28. Noël, E.S., Casal-Sueiro, A., Busch-Nentwich, E., Verkade, H., Dong, P.D., Stemple, D.L. and Ober, E.A. (2008) Organ-specific requirements for Hdac1 in liver and pancreas formation. Dev Biol.
29. Ober, E.A., Field, H.A., Stainier, D.Y., 2003. From endoderm formation to liver and pancreas development in zebrafish. Mech Dev 120, 5-18.
30. Otterbein, L.R., Cosio, C., Graceffa, P., Dominguez, R., 2002. Crystal structures of the vitamin D-binding protein and its complex with actin: structural basis of the actin-scavenger system. Proc Natl Acad Sci USA 99, 8003-8008.
31. Parmelee, D.C., Evenson, M.A., Deutsch, H.F., 1978. The presence of fatty acids in human alpha-fetoprotein. J Biol Chem 253, 2114-2119.
32. Peters Jr., T., 1985. Serum albumin. Adv Protein Chem 37, 161-245.
33. Reimold, A.M., Etkin, A., Clauss, I., Perkins, A., Friend, D.S., Zhang, J., Horton, H.F., Scott, A., Orkin, S.H., Byrne, M.C., Grusby, M.J., Glimcher, L.H., 2000. An essential role in liver development for transcription factor XBP-1. Genes Dev 14, 152-157.
34. Sakaguchi, T.F., Sadler, K.C., Crosnier, C., Stainier, D.Y., 2008. Endothelial signals modulate hepatocyte apicobasal polarization in zebrafish. Curr Biol 18, 1565-1571.
35. Sellem, C.H., Cassio, D., Sala-Trepat, J.M., Weiss, M.C., 1983. Coordinate secretion of rat and mouse albumin by mouse hepatoma x rat hepatoma hybrid cells directly reflects the intracellular concentration of the corresponding mRNAs. J Cell Physiol 115, 175-178.
36. Sharma, M.K., Liu, R.Z., Thisse, C., Thisse, B., Denovan-Wright, E.M., Wright, J.M., 2006. Hierarchical subfunctionalization of fabp1a, fabp1b and fabp10 tissuespecific expression may account for retention of these duplicated genes in the zebrafish (Danio rerio) genome. FEBS J 273, 3216-3229.
37. Stainier, D.Y., Weinstein, B.M., Detrich, H.W., Zon, L.I., Fishman, M.C., 1995. Cloche, an early acting zebrafish gene, is required by both the endothelial and hematopoietic lineages. Development 121, 3141-3150.
38. Tao, T., Peng, J., 2009. Liver development in zebrafish (Danio rerio). J Genet Genomics 36, 325-334.
39. Van Baelen, H., Bouillon, R., De Moor, P., 1980. Vitamin D-binding protein (Gcglobulin) binds actin. J Biol Chem 255, 2270-2272.
40. Verboven, C., Rabijns, A., De Maeyer, M., Van Baelen, H., Bouillon, R., De Ranter, C., 2002. A structural basis for the unique binding features of the human vitamin D-binding protein. Nat Struct Biol 9, 131-136.
41. Voegele, A.F., Jerkovic, L., Wellenzohn, B., Eller, P., Kronenberg, F., Liedl, K.R., Dieplinger, H., 2002. Characterization of the vitamin E-binding properties of human plasma afamin. Biochemistry 41, 14532-14538.
42. Westerfield, M. (2000) The Zebrafish Book: A Guide for the Laboratory Use of Zebrafish (Danio rerio). University of Oregon Press.
43. Yamaguchi, M., Tonou-Fujimori, N., Komori, A., Maeda, R., Nojima, Y., Li, H., Okamoto, H., Masai, I., 2005. Histone deacetylase 1 regulates retinal neurogenesis in zebrafish by suppressing Wnt and Notch signaling pathways. Development 132, 3027-3043.
44. Zaret, K.S., 2002. Regulatory phases of early liver development: paradigms of organogenesis. Nat Rev Genet 3, 499-512.
45. Zorn, A.M. (2008) Liver development. Stembook.
46. Zorn, A.M., Mason, J., 2001. Gene expression in the embryonic Xenopus liver. Mech Dev 103, 153-157.