Computational modeling of a carbon nanotube-based DNA nanosensor

Nanotechnology

Volumn 21, Issue 44, 2010, Pages

  Kalantari Nejad, R ^a   Bahrami, M ^a   Rafii Tabar, H ^b,c   Rungger, I ^d   Sanvito, S ^d  

^a AMIRKABIR UNIVERSITY OF TECHNOLOGY   (Iran)

^b SHAHID BEHESHTI UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^c INSTITUTE FOR RESEARCH IN FUNDAMENTAL SCIENCES IPM   (Iran)

^d TRINITY COLLEGE DUBLIN   (Ireland)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVE AREA; ATOMIC STRUCTURE; BEFORE AND AFTER; BIO-MOLECULAR; COMPUTATIONAL MODELING; COVALENT BONDING; COVALENTLY BONDED; DNA PROBE; DNA STRANDS; ELECTRICAL CONDUCTANCE; EQUILIBRIUM GEOMETRIES; FUNCTIONALIZED; GOLD ELECTRODES; LINEAR RESPONSE; NON-EQUILIBRIUM GREEN'S FUNCTION; ONE-DIMENSIONAL NANOSTRUCTURE; QUANTUM TRANSPORT; RECEPTOR PROBES; SENSING EFFICIENCY; TRANSMISSION COEFFICIENTS;

BIOSENSORS; CARBON NANOTUBES; DENSITY FUNCTIONAL THEORY; DNA; GREEN'S FUNCTION; NANOSENSORS; PROBES; QUANTUM CHEMISTRY; QUANTUM ELECTRONICS;

SINGLE-WALLED CARBON NANOTUBES (SWCN);

CARBON NANOTUBE; DNA; NANOMATERIAL;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; GENETIC PROCEDURES; INSTRUMENTATION;

BIOSENSING TECHNIQUES; COMPUTER SIMULATION; DNA; MODELS, MOLECULAR; NANOSTRUCTURES; NANOTUBES, CARBON;

EID: 77958591103     PISSN: 09574484     EISSN: 13616528     Source Type: Journal    
DOI: 10.1088/0957-4484/21/44/445501     Document Type: Article

References (37)

1. Hood L, Heath J R, Phelps M E and Lin B 2004 Science 306 640-3
2. Ward A M, Catto J W F and Hamdy F C 2001 Ann. Clin. Biochem. 38 633-51
3. Cheng M M et al 2006 Curr. Opin. Chem. Biol. 10 11-9
4. Kalantar-zadeh K and Fry B 2008 Nanotechnology-Enabled Sensors (Berlin: Springer)
5. Herold K E and Rasooly A 2009 Lab-on-a-Chip Technology vol 1-2 (Norfolk: Caister Academic Press)
6. Nanomedicine 2006-2011 2006 MarketResearch.com
7. Patolsky F, Zheng G and Lieber C M 2006 Anal. Chem. 78 4260-9
8. Chen R J, Bangsaruntip S, Drouvalakis K A, Wong Shi Kam N, Shim M, Li Y, Kim W, Utz P J and Dai H 2003 Proc. Natl Acad. Sci. 100 4984-9
9. Kauffman D R and Star A 2008 Chem. Soc. Rev. 37 1197-206
10. Rafii-Tabar H 2009 Computational Physics of Carbon Nanotubes (Cambridge: Cambridge University Press)
11. Gruner G 2006 Anal. Bioanal. Chem. 384 322-35
12. YangW, Thordarson P, Gooding J J, Ringer S P and Braet F 2007 Nanotechnology 18 412001
13. Roman C, Roche S and Rubio A 2008 Advanced Micro and Nanosystems vol 8 Carbon Nanotube Device (Riverton, NJ: Wiley-VCH)
14. Charlier J-C, Blasé X and Roche S 2007 Rev. Mod. Phys. 79 677-732
15. Heller I, Janssene A M, Mannik J, Minot E D, Lemay S G and Dekker C 2008 Nano Lett. 8 591-5
16. Chen R J, Choi H C, Bangsaruntip S, Yenilmez E, Tang X, Wang Q, Chang Y-L and Dai H 2004 J. Am. Chem. Soc. 123 1563-8
17. Rocha A R, Rossi M, Fazzio A and da Silva A J R 2008 Phys. Rev. Lett. 100 176803
18. Abadir G B, Walus K and Pulfrey D 2010 Nanotechnology 21 015202
19. Hohenberg P and Kohn W 1964 Phys. Rev. 136 B864-71
20. Datta S 1995 Electronic Transport in Mesoscopic Systems (Cambridge: Cambridge University Press)
21. Phillips J C, Braun R, Wang W, Gumbart J, Tajkhorshid E, Villa E, Chipot C, Skeel R D, Kale L and Schulten K 2005 J. Comput. Chem. 26 1781-802
22. Cornell W D, Cieplak P, Bayly C I, Gould I R, Merz K M Jr, Ferguson D M, Spellmeyer D C, Fox T, Caldwell J W and Kollman J W 1995 J. Am. Chem. Soc. 117 5179-97
23. JorgensenW L, Chandrasekhar J, Madura J D, Impey R W and Klein M L 1983 J. Chem. Phys. 79 926-35
24. Johnson R R, Rego B J, Johnson A T C and Klein M L 2009 J. Phys. Chem. B 113 11589-93
25. Bhandarkar M 2009 NAMD User's Guide Version 2.7b2, available online: http://www.ks.uiuc.edu/Research/namd/2.7b2/ug/
26. Deretzis I and La Magna A 2006 Nanotechnology 17 5063-72
27. Rungger I and Sanvito S 2008 Phys. Rev. B 78 035407
28. Rocha A R, Garcia-Suarez V M, Bailey S W, Lambert C J, Ferrer J and Sanvito S 2005 Nat. Mater. 4 335
29. Rocha A R, Garcia-Suarez V M, Bailey S W, Lambert C J, Ferrer J and Sanvito S 2006 Phys. Rev. B 73 085414
30. Soler J M, Artacho E, Gale J D, Garcia A, Junquera J, Ordejon P and Sanchez-Portal D 2002 J. Phys.: Condens. Matter. 14 2745-79
31. Sanvito S, Lambert C J, Jefferson J H and Bratkovsky A M 1999 Phys. Rev. B 59 11936-48
32. Chao C, Kemper A F, Agapito L, Zhang J-W, He Y, Rinzler A, Cheng H, Zhang X-G, Rocha A R and Sanvito S 2009 Phys. Rev. B 79 075127
33. Toher C and Sanvito S 2008 Phys. Rev. B 77 155402
34. Junquera J, Paz O, Sanchez-Portal D and Artacho E 2001 Phys. Rev. B 64 235111
35. Ceperley D M and Alder B J 1980 Phys. Rev. Lett. 45 566-9
36. Chen R J, Zheng Y G, Wang D W and Dai H J 2001 J. Am. Chem. Soc. 123 3838-9
37. Rungger I, Chen X, Schwingenschlogl U and Sanvito S 2010 Phys. Rev. B 81 235407