Spot segmentation and verification based on improve marker controlled watershed transform

Proceedings - 2010 3rd IEEE International Conference on Computer Science and Information Technology, ICCSIT 2010

Volumn 8, Issue , 2010, Pages 63-66

  Sun, Cheng Li ^a   Wang, Xi Min ^b  

^a NANCHANG HANGKONG UNIVERSITY   (China)

^b Hangkong University   (China)

Author keywords

Image segmentation; Spot detection; Spot verification; Watershed transform

Indexed keywords

PROTEIN SAMPLES; PROTEIN SPOTS; SPOT DETECTION; SPOT SEGMENTATION; SPOT VERIFICATION; TWO STAGE; TWO-DIMENSIONAL GEL ELECTROPHORESIS; WATERSHED TRANSFORM;

COMPUTER SCIENCE; ELECTROPHORESIS; INFORMATION TECHNOLOGY; LANDFORMS; PROTEINS; WATERSHEDS;

IMAGE SEGMENTATION;

EID: 77958553974     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICCSIT.2010.5563982     Document Type: Conference Paper

References (10)

1. Berth M, Moser F, Kolbe M, Bernhardt J: The state of the art in the analysis of two-dimensional gel electrophoresis images. Microbiol BiotechnoI 2007, 76:1223-1243.
2. Dowsey A W, Dunn MJ, Yang GZ. The role of bioinformatics in two dimensional gel electrophoresis. 2003. Proteomics 3(8): 1567-1596.
3. Patton WF (2002) Detection technologies in proteome analysis. J Chromatogr B 771:3-31.
4. Lemkin PF, Rogan P (1991) Automatic detection of noisy spots in two-dimensional Southern blots. Appl. Theor. Electrophor. 2, 141-149.
5. Vincent L., Soille P., "Watershed in Digital Space: An Efficient Algorithm Based on Immersion Simulation", IEEE Transaction on Pattern Analysis and Machine Learning, Vol.33, No. 6, 1991, pp. 583-598.
6. Hamarneh, G., & Li, X. (2009). Watershed segmentation using prior shape and appearance knowledge. Image and Vision Computing, 27(1-2), 59-68.
7. Tsai M.-H., Hsu H.-H., Cheng C.C., "Watershed-based Protein Spot Detection in 2D-GE Images", Proceeding of the International Computer Symposium 2006, pp. 1334-1338.
8. D. Matuzevhius, D. Navakauskas. Feature Selection for Segmentation of 2-D Electrophoresis Gel Images. 2008 International Biennial Baltic Electronics Conference.978-982. 2008.
9. L. Vincent, "Morphological grayscale reconstruction in image analysis: applications and efficient algorithms, " IEEE Transactions on Image Processing, vol. 2, no. 2, pp. 176-201, 1993.
10. Thitiwan Srinark. Chandra Kambhamettu. An image analysis suite for spot detection and spot matching in two-dimensional electrophoresis gels. Electrophoresis, 29, 706-715. 2008.